EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0002906 (Gene tree)
Gene ID: 41366
Gene Symbol: Blm
Alias: -
Full Name: Bloom syndrome helicase
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 4974 bases
Position: chr3R:11736810-11741783
Accession: FBgn0002906
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0081910	HRDC	PF00570.23	1.4e-13	1	1
FBpp0081910	DEAD	PF00270.29	1.2e-17	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0082434	-	4806	-	FBpp0081910	1487 (aa)	-	Q9VGI8

Gene Model

Click here to download FBgn0002906's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0002906's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0002906	Blm	50	41.184	ENSG00000197299	BLM	52	41.789	Homo_sapiens
FBgn0002906	Blm	51	42.003	ENSAMEG00000013843	BLM	56	39.782	Ailuropoda_melanoleuca
FBgn0002906	Blm	52	41.730	ENSACAG00000014275	BLM	50	43.151	Anolis_carolinensis
FBgn0002906	Blm	50	41.775	ENSANAG00000038415	BLM	51	42.148	Aotus_nancymaae
FBgn0002906	Blm	52	36.576	WBGene00001865	him-6	78	36.637	Caenorhabditis_elegans
FBgn0002906	Blm	51	41.313	ENSCAFG00000012385	BLM	52	41.987	Canis_familiaris
FBgn0002906	Blm	51	41.313	ENSCAFG00020016111	BLM	85	42.120	Canis_lupus_dingo
FBgn0002906	Blm	50	41.492	ENSCHIG00000010329	BLM	50	42.568	Capra_hircus
FBgn0002906	Blm	51	40.927	ENSTSYG00000012368	BLM	51	41.755	Carlito_syrichta
FBgn0002906	Blm	57	38.839	ENSCPOG00000001761	BLM	54	41.085	Cavia_porcellus
FBgn0002906	Blm	51	40.485	ENSCCAG00000023069	BLM	52	41.099	Cebus_capucinus
FBgn0002906	Blm	52	40.759	ENSCLAG00000012111	BLM	51	42.091	Chinchilla_lanigera
FBgn0002906	Blm	57	39.649	ENSCPBG00000025000	BLM	65	44.848	Chrysemys_picta_bellii
FBgn0002906	Blm	53	40.625	ENSCGRG00001024897	Blm	52	41.987	Cricetulus_griseus_chok1gshd
FBgn0002906	Blm	53	40.971	ENSDORG00000011033	Blm	82	39.160	Dipodomys_ordii
FBgn0002906	Blm	51	40.153	ENSEEUG00000001434	BLM	56	39.900	Erinaceus_europaeus
FBgn0002906	Blm	52	41.080	ENSELUG00000019098	blm	50	42.375	Esox_lucius
FBgn0002906	Blm	52	41.065	ENSFCAG00000006087	BLM	50	42.527	Felis_catus
FBgn0002906	Blm	52	34.453	ENSFDAG00000012658	BLM	54	34.102	Fukomys_damarensis
FBgn0002906	Blm	56	39.302	ENSFHEG00000002553	blm	53	41.809	Fundulus_heteroclitus
FBgn0002906	Blm	52	42.548	ENSGMOG00000016431	blm	79	43.056	Gadus_morhua
FBgn0002906	Blm	52	40.852	ENSGAFG00000001117	blm	54	42.371	Gambusia_affinis
FBgn0002906	Blm	50	41.370	ENSGGOG00000007710	BLM	72	54.452	Gorilla_gorilla
FBgn0002906	Blm	55	39.319	ENSHGLG00000013231	BLM	56	39.927	Heterocephalus_glaber_female
FBgn0002906	Blm	52	40.482	ENSHCOG00000011455	blm	73	41.883	Hippocampus_comes
FBgn0002906	Blm	52	40.506	ENSIPUG00000000529	blm	58	43.694	Ictalurus_punctatus
FBgn0002906	Blm	52	40.075	ENSLOCG00000014302	blm	52	41.113	Lepisosteus_oculatus
FBgn0002906	Blm	51	41.026	ENSMAMG00000008726	blm	56	40.727	Mastacembelus_armatus
FBgn0002906	Blm	53	40.099	ENSMMOG00000006959	blm	52	41.949	Mola_mola
FBgn0002906	Blm	51	41.214	ENSMODG00000019449	BLM	50	41.611	Monodelphis_domestica
FBgn0002906	Blm	51	41.485	MGP_CAROLIEiJ_G0029907	Blm	55	41.221	Mus_caroli
FBgn0002906	Blm	51	41.613	ENSMUSG00000030528	Blm	51	41.888	Mus_musculus
FBgn0002906	Blm	51	41.688	MGP_SPRETEiJ_G0031009	Blm	58	39.461	Mus_spretus
FBgn0002906	Blm	54	39.742	ENSMLUG00000014697	BLM	61	39.047	Myotis_lucifugus
FBgn0002906	Blm	51	38.776	ENSODEG00000015373	BLM	68	39.891	Octodon_degus
FBgn0002906	Blm	51	41.236	ENSOANG00000009316	-	83	44.954	Ornithorhynchus_anatinus
FBgn0002906	Blm	53	39.952	ENSOCUG00000013969	BLM	55	40.224	Oryctolagus_cuniculus
FBgn0002906	Blm	54	39.758	ENSORLG00000008110	blm	57	39.825	Oryzias_latipes
FBgn0002906	Blm	54	39.493	ENSORLG00020004812	blm	57	39.576	Oryzias_latipes_hni
FBgn0002906	Blm	54	39.759	ENSORLG00015018640	blm	66	43.873	Oryzias_latipes_hsok
FBgn0002906	Blm	52	41.236	ENSOMEG00000023545	blm	56	41.184	Oryzias_melastigma
FBgn0002906	Blm	52	41.065	ENSPPRG00000002471	BLM	50	42.527	Panthera_pardus
FBgn0002906	Blm	52	40.684	ENSPTIG00000016168	BLM	50	42.120	Panthera_tigris_altaica
FBgn0002906	Blm	50	41.953	ENSPEMG00000017348	Blm	51	42.190	Peromyscus_maniculatus_bairdii
FBgn0002906	Blm	53	40.247	ENSPCIG00000006609	BLM	52	40.845	Phascolarctos_cinereus
FBgn0002906	Blm	55	40.072	ENSPFOG00000005059	blm	55	41.087	Poecilia_formosa
FBgn0002906	Blm	52	40.977	ENSPMEG00000000321	blm	55	41.214	Poecilia_mexicana
FBgn0002906	Blm	52	41.228	ENSPREG00000007715	blm	57	40.898	Poecilia_reticulata
FBgn0002906	Blm	50	40.395	ENSPPYG00000006784	BLM	51	40.940	Pongo_abelii
FBgn0002906	Blm	51	39.464	ENSPCAG00000008960	BLM	51	40.346	Procavia_capensis
FBgn0002906	Blm	52	34.410	ENSPCOG00000000439	BLM	56	33.882	Propithecus_coquereli
FBgn0002906	Blm	52	41.191	ENSPNAG00000011714	blm	53	41.754	Pygocentrus_nattereri
FBgn0002906	Blm	52	41.366	ENSRNOG00000011213	Blm	51	42.573	Rattus_norvegicus
FBgn0002906	Blm	50	40.252	ENSRBIG00000029656	BLM	72	54.110	Rhinopithecus_bieti
FBgn0002906	Blm	50	40.252	ENSRROG00000037871	BLM	72	54.110	Rhinopithecus_roxellana
FBgn0002906	Blm	50	42.593	ENSSHAG00000007988	BLM	54	42.051	Sarcophilus_harrisii
FBgn0002906	Blm	55	39.744	ENSSLDG00000000634	blm	52	42.222	Seriola_lalandi_dorsalis
FBgn0002906	Blm	55	39.789	ENSSSCG00000001816	BLM	61	39.681	Sus_scrofa
FBgn0002906	Blm	50	41.410	ENSTRUG00000019860	blm	51	43.132	Takifugu_rubripes
FBgn0002906	Blm	51	41.429	ENSTTRG00000016386	BLM	60	39.450	Tursiops_truncatus
FBgn0002906	Blm	53	40.224	ENSUMAG00000009105	BLM	94	42.198	Ursus_maritimus
FBgn0002906	Blm	51	41.229	ENSVVUG00000006402	BLM	55	47.047	Vulpes_vulpes
FBgn0002906	Blm	54	40.170	ENSXMAG00000002951	blm	50	42.639	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	21873635.	IBA	Process
GO:0000228	nuclear chromosome	21873635.	IBA	Component
GO:0000400	four-way junction DNA binding	21873635.	IBA	Function
GO:0000403	Y-form DNA binding	21873635.	IBA	Function
GO:0000403	Y-form DNA binding	17272294.	IDA	Function
GO:0000405	bubble DNA binding	21873635.	IBA	Function
GO:0000712	resolution of meiotic recombination intermediates	21873635.	IBA	Process
GO:0000724	double-strand break repair via homologous recombination	21873635.	IBA	Process
GO:0000724	double-strand break repair via homologous recombination	17075047.	IMP	Process
GO:0000731	DNA synthesis involved in DNA repair	21873635.	IBA	Process
GO:0000731	DNA synthesis involved in DNA repair	12522255.	IMP	Process
GO:0000732	strand displacement	21873635.	IBA	Process
GO:0000732	strand displacement	17272294.	IDA	Process
GO:0000733	DNA strand renaturation	17272294.	IDA	Process
GO:0000781	chromosome, telomeric region	21873635.	IBA	Component
GO:0000800	lateral element	21873635.	IBA	Component
GO:0002039	p53 binding	21873635.	IBA	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003678	DNA helicase activity	10908583.	ISS	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0004003	ATP-dependent DNA helicase activity	10049920.	ISS	Function
GO:0004386	helicase activity	10908586.	ISS	Function
GO:0005524	ATP binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	17272294.	IDA	Component
GO:0005657	replication fork	21873635.	IBA	Component
GO:0005694	chromosome	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006281	DNA repair	21873635.	IBA	Process
GO:0006281	DNA repair	22022278.	IGI	Process
GO:0006281	DNA repair	25205745.	IMP	Process
GO:0006302	double-strand break repair	8608940.11283371.22183041.	IMP	Process
GO:0006303	double-strand break repair via nonhomologous end joining	21873635.	IBA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	15184650.	IGI	Process
GO:0006310	DNA recombination	21873635.	IBA	Process
GO:0006974	cellular response to DNA damage stimulus	10049920.	IGI	Process
GO:0006974	cellular response to DNA damage stimulus	17507683.	IMP	Process
GO:0007095	mitotic G2 DNA damage checkpoint	21873635.	IBA	Process
GO:0007131	reciprocal meiotic recombination	17507683.	IMP	Process
GO:0008094	DNA-dependent ATPase activity	17272294.	IDA	Function
GO:0008270	zinc ion binding	21873635.	IBA	Function
GO:0009378	four-way junction helicase activity	21873635.	IBA	Function
GO:0010165	response to X-ray	21873635.	IBA	Process
GO:0010705	meiotic DNA double-strand break processing involved in reciprocal meiotic recombination	21873635.	IBA	Process
GO:0016363	nuclear matrix	21873635.	IBA	Component
GO:0016605	PML body	21873635.	IBA	Component
GO:0031297	replication fork processing	21873635.	IBA	Process
GO:0032508	DNA duplex unwinding	21873635.	IBA	Process
GO:0032508	DNA duplex unwinding	17272294.	IDA	Process
GO:0036310	annealing helicase activity	21873635.	IBA	Function
GO:0042803	protein homodimerization activity	21873635.	IBA	Function
GO:0043066	negative regulation of apoptotic process	21873635.	IBA	Process
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	21873635.	IBA	Function
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	17272294.	IDA	Function
GO:0044806	G-quadruplex DNA unwinding	21873635.	IBA	Process
GO:0045003	double-strand break repair via synthesis-dependent strand annealing	21873635.	IBA	Process
GO:0045003	double-strand break repair via synthesis-dependent strand annealing	15501916.17507683.	IMP	Process
GO:0045120	pronucleus	21873635.	IBA	Component
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045950	negative regulation of mitotic recombination	21873635.	IBA	Process
GO:0051259	protein complex oligomerization	21873635.	IBA	Process
GO:0051260	protein homooligomerization	21873635.	IBA	Process
GO:0051307	meiotic chromosome separation	21873635.	IBA	Process
GO:0051782	negative regulation of cell division	21873635.	IBA	Process
GO:0061749	forked DNA-dependent helicase activity	21873635.	IBA	Function
GO:0061820	telomeric D-loop disassembly	21873635.	IBA	Process
GO:0061821	telomeric D-loop binding	21873635.	IBA	Function
GO:0071139	resolution of recombination intermediates	21873635.	IBA	Process
GO:0071479	cellular response to ionizing radiation	21873635.	IBA	Process
GO:0072711	cellular response to hydroxyurea	21873635.	IBA	Process
GO:0090329	regulation of DNA-dependent DNA replication	21873635.	IBA	Process
GO:1901291	negative regulation of double-strand break repair via single-strand annealing	21873635.	IBA	Process
GO:1901291	negative regulation of double-strand break repair via single-strand annealing	18978019.	IMP	Process
GO:1905168	positive regulation of double-strand break repair via homologous recombination	21873635.	IBA	Process
GO:1905773	8-hydroxy-2'-deoxyguanosine DNA binding	21873635.	IBA	Function
GO:1990918	double-strand break repair involved in meiotic recombination	16454858.	IMP	Process