EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0003165 (Gene tree)
Gene ID: 41094
Gene Symbol: pum
Alias: -
Full Name: pumilio
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 171340 bases
Position: chr3R:9066343-9237682
Accession: FBgn0003165
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0305824	PUF	PF00806.19	3.2e-77	1	8
FBpp0305824	PUF	PF00806.19	3.2e-77	2	8
FBpp0305824	PUF	PF00806.19	3.2e-77	3	8
FBpp0305824	PUF	PF00806.19	3.2e-77	4	8
FBpp0305824	PUF	PF00806.19	3.2e-77	5	8
FBpp0305824	PUF	PF00806.19	3.2e-77	6	8
FBpp0305824	PUF	PF00806.19	3.2e-77	7	8
FBpp0305824	PUF	PF00806.19	3.2e-77	8	8
FBpp0293727	PUF	PF00806.19	3.3e-77	1	8
FBpp0293727	PUF	PF00806.19	3.3e-77	2	8
FBpp0293727	PUF	PF00806.19	3.3e-77	3	8
FBpp0293727	PUF	PF00806.19	3.3e-77	4	8
FBpp0293727	PUF	PF00806.19	3.3e-77	5	8
FBpp0293727	PUF	PF00806.19	3.3e-77	6	8
FBpp0293727	PUF	PF00806.19	3.3e-77	7	8
FBpp0293727	PUF	PF00806.19	3.3e-77	8	8
FBpp0081474	PUF	PF00806.19	3.7e-77	1	8
FBpp0081474	PUF	PF00806.19	3.7e-77	2	8
FBpp0081474	PUF	PF00806.19	3.7e-77	3	8
FBpp0081474	PUF	PF00806.19	3.7e-77	4	8
FBpp0081474	PUF	PF00806.19	3.7e-77	5	8
FBpp0081474	PUF	PF00806.19	3.7e-77	6	8
FBpp0081474	PUF	PF00806.19	3.7e-77	7	8
FBpp0081474	PUF	PF00806.19	3.7e-77	8	8
FBpp0081473	PUF	PF00806.19	3e-76	1	8
FBpp0081473	PUF	PF00806.19	3e-76	2	8
FBpp0081473	PUF	PF00806.19	3e-76	3	8
FBpp0081473	PUF	PF00806.19	3e-76	4	8
FBpp0081473	PUF	PF00806.19	3e-76	5	8
FBpp0081473	PUF	PF00806.19	3e-76	6	8
FBpp0081473	PUF	PF00806.19	3e-76	7	8
FBpp0081473	PUF	PF00806.19	3e-76	8	8
FBpp0081470	PUF	PF00806.19	3.2e-75	1	8
FBpp0081470	PUF	PF00806.19	3.2e-75	2	8
FBpp0081470	PUF	PF00806.19	3.2e-75	3	8
FBpp0081470	PUF	PF00806.19	3.2e-75	4	8
FBpp0081470	PUF	PF00806.19	3.2e-75	5	8
FBpp0081470	PUF	PF00806.19	3.2e-75	6	8
FBpp0081470	PUF	PF00806.19	3.2e-75	7	8
FBpp0081470	PUF	PF00806.19	3.2e-75	8	8
FBpp0081471	PUF	PF00806.19	3.2e-75	1	8
FBpp0081471	PUF	PF00806.19	3.2e-75	2	8
FBpp0081471	PUF	PF00806.19	3.2e-75	3	8
FBpp0081471	PUF	PF00806.19	3.2e-75	4	8
FBpp0081471	PUF	PF00806.19	3.2e-75	5	8
FBpp0081471	PUF	PF00806.19	3.2e-75	6	8
FBpp0081471	PUF	PF00806.19	3.2e-75	7	8
FBpp0081471	PUF	PF00806.19	3.2e-75	8	8
FBpp0081472	PUF	PF00806.19	3.2e-75	1	8
FBpp0081472	PUF	PF00806.19	3.2e-75	2	8
FBpp0081472	PUF	PF00806.19	3.2e-75	3	8
FBpp0081472	PUF	PF00806.19	3.2e-75	4	8
FBpp0081472	PUF	PF00806.19	3.2e-75	5	8
FBpp0081472	PUF	PF00806.19	3.2e-75	6	8
FBpp0081472	PUF	PF00806.19	3.2e-75	7	8
FBpp0081472	PUF	PF00806.19	3.2e-75	8	8
FBpp0305823	PUF	PF00806.19	3.2e-75	1	8
FBpp0305823	PUF	PF00806.19	3.2e-75	2	8
FBpp0305823	PUF	PF00806.19	3.2e-75	3	8
FBpp0305823	PUF	PF00806.19	3.2e-75	4	8
FBpp0305823	PUF	PF00806.19	3.2e-75	5	8
FBpp0305823	PUF	PF00806.19	3.2e-75	6	8
FBpp0305823	PUF	PF00806.19	3.2e-75	7	8
FBpp0305823	PUF	PF00806.19	3.2e-75	8	8

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0333668	-	8057	-	FBpp0305824	921 (aa)	-	A0A0B4KFF0
FBtr0081994	-	4685	-	FBpp0081474	935 (aa)	-	P25822-3
FBtr0333667	-	10223	-	FBpp0305823	1533 (aa)	-	P25822
FBtr0081990	-	6661	-	FBpp0081470	1533 (aa)	-	P25822
FBtr0081991	-	6659	-	FBpp0081471	1533 (aa)	-	P25822
FBtr0081992	-	6809	-	FBpp0081472	1533 (aa)	-	P25822
FBtr0081993	-	7473	-	FBpp0081473	1185 (aa)	-	P25822
FBtr0305197	-	4655	-	FBpp0293727	925 (aa)	-	A0A0B4K612

Gene Model

Click here to download FBgn0003165's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003165's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000278	mitotic cell cycle	11858839.	TAS	Process
GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	11858839.	TAS	Process
GO:0000900	translation repressor activity, mRNA regulatory element binding	22514614.	IDA	Function
GO:0000900	translation repressor activity, mRNA regulatory element binding	12414187.	TAS	Function
GO:0003723	RNA binding	18463699.	IPI	Function
GO:0003730	mRNA 3'-UTR binding	15541314.19403823.22345517.27256879.	IDA	Function
GO:0003730	mRNA 3'-UTR binding	12655640.	TAS	Function
GO:0005635	nuclear envelope	24172131.	IDA	Component
GO:0005737	cytoplasm	25294944.	HDA	Component
GO:0005737	cytoplasm	1576962.15541314.	IDA	Component
GO:0007268	chemical synaptic transmission	12136020.	IMP	Process
GO:0007280	pole cell migration	10559987.	IMP	Process
GO:0007280	pole cell migration	12655640.	TAS	Process
GO:0007281	germ cell development	11858839.	TAS	Process
GO:0007616	long-term memory	21490205.	IMP	Process
GO:0007616	long-term memory	12593811.	TAS	Process
GO:0008258	head involution	12015297.	IMP	Process
GO:0008582	regulation of synaptic growth at neuromuscular junction	15541314.	IDA	Process
GO:0008595	anterior/posterior axis specification, embryo	11858839.	TAS	Process
GO:0016441	posttranscriptional gene silencing	22345517.	IDA	Process
GO:0016477	cell migration	11858839.	TAS	Process
GO:0017148	negative regulation of translation	12414187.12655640.	TAS	Process
GO:0031594	neuromuscular junction	15541314.	IDA	Component
GO:0042059	negative regulation of epidermal growth factor receptor signaling pathway	22514614.	IMP	Process
GO:0042078	germ-line stem cell division	11131516.	NAS	Process
GO:0045727	positive regulation of translation	11700288.	TAS	Process
GO:0045786	negative regulation of cell cycle	11858839.	TAS	Process
GO:0045892	negative regulation of transcription, DNA-templated	12655640.	TAS	Process
GO:0048149	behavioral response to ethanol	18435628.	IMP	Process
GO:0048477	oogenesis	9988212.	TAS	Process
GO:0048813	dendrite morphogenesis	14972682.	IMP	Process
GO:0050804	modulation of chemical synaptic transmission	15470135.	IMP	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	24942623.	IDA	Process
GO:0061176	type Ib terminal bouton	15541314.	IDA	Component
GO:0061177	type Is terminal bouton	15541314.	IDA	Component
GO:0071598	neuronal ribonucleoprotein granule	17178403.	IDA	Component
GO:0097482	muscle cell postsynaptic specialization	15541314.	IDA	Component
GO:1990124	messenger ribonucleoprotein complex	17178403.	IDA	Component