EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0003189 (Gene tree)
Gene ID: 32640
Gene Symbol: r
Alias: -
Full Name: rudimentary
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 13354
Position: chrX: 16655359-16668712
Accession: FBgn0003189
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0089734	-	7057	-	FBpp0088675	2224 (aa)	-	P05990
FBtr0340156	-	6946	-	FBpp0309142	2224 (aa)	-	P05990
FBtr0340155	-	6875	-	FBpp0309141	2224 (aa)	-	P05990

Gene Model

Click here to download FBgn0003189's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003189's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0003189	r	99	49.068	YJL130C		99	49.068	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004070	aspartate carbamoyltransferase activity	21873635.	IBA	Function
GO:0004070	aspartate carbamoyltransferase activity	28118.	IDA	Function
GO:0004070	aspartate carbamoyltransferase activity	806025.4218218.	IMP	Function
GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	21873635.	IBA	Function
GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	28118.	IDA	Function
GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	4218218.	IMP	Function
GO:0004151	dihydroorotase activity	21873635.	IBA	Function
GO:0004151	dihydroorotase activity	28118.	IDA	Function
GO:0004151	dihydroorotase activity	806025.	IMP	Function
GO:0005524	ATP binding	-	IC	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	21873635.	IBA	Process
GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	4218218.5004701.	IMP	Process
GO:0006228	UTP biosynthetic process	21873635.	IBA	Process
GO:0006541	glutamine metabolic process	21873635.	IBA	Process
GO:0006541	glutamine metabolic process	-	IC	Process
GO:0006541	glutamine metabolic process	28118.	IMP	Process
GO:0006807	nitrogen compound metabolic process	21873635.	IBA	Process
GO:0016597	amino acid binding	-	IEA	Function
GO:0019240	citrulline biosynthetic process	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0070406	glutamine binding	-	IC	Function