EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Gene Ontology

Description

Ensembl ID: FBgn0003261 (Gene tree)
Gene ID: 40739
Gene Symbol: Rm62
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 8154 bases
Position: chr3R:6000426-6008579
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0301223	DEAD	PF00270.29	6.6e-48	1	1
FBpp0301224	DEAD	PF00270.29	6.6e-48	1	1
FBpp0301225	DEAD	PF00270.29	7e-48	1	1
FBpp0301226	DEAD	PF00270.29	7.3e-48	1	1
FBpp0078299	DEAD	PF00270.29	1.2e-47	1	1
FBpp0291159	DEAD	PF00270.29	1.2e-47	1	1
FBpp0078298	DEAD	PF00270.29	1.2e-47	1	1
FBpp0078300	DEAD	PF00270.29	1.2e-47	1	1
FBpp0078303	DEAD	PF00270.29	1.2e-47	1	1
FBpp0078302	DEAD	PF00270.29	1.2e-47	1	1
FBpp0291753	DEAD	PF00270.29	1.2e-47	1	1
FBpp0078301	DEAD	PF00270.29	2e-47	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0302597	-	3153	-	FBpp0291753	578 (aa)	-	C7LAE4
FBtr0309322	-	3411	-	FBpp0301226	478 (aa)	-	A0A0B4K6K1
FBtr0301947	-	2760	-	FBpp0291159	575 (aa)	-	E1JJ68
FBtr0309320	-	3683	-	FBpp0301224	485 (aa)	-	A0A0B4K6T7
FBtr0309321	-	3793	-	FBpp0301225	473 (aa)	-	A0A0B4K6A3
FBtr0078654	-	2833	-	FBpp0078303	578 (aa)	-	P19109
FBtr0078653	-	3160	-	FBpp0078302	578 (aa)	-	C7LAE4
FBtr0078652	-	2995	-	FBpp0078301	719 (aa)	-	P19109
FBtr0078651	-	3087	-	FBpp0078300	578 (aa)	-	P19109-2
FBtr0078650	-	2757	-	FBpp0078299	575 (aa)	-	E1JJ68
FBtr0078649	-	2849	-	FBpp0078298	578 (aa)	-	P19109-2
FBtr0309319	-	4362	-	FBpp0301223	458 (aa)	-	A0A0B4K624

Gene Model

Click here to download FBgn0003261's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003261's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0003261	Rm62	95	40.265	FBgn0037549	CG7878	63	44.944
FBgn0003261	Rm62	60	30.055	FBgn0037561	CG9630	58	30.328
FBgn0003261	Rm62	76	37.916	FBgn0015331	abs	67	38.732
FBgn0003261	Rm62	58	30.622	FBgn0027602	CG8611	50	30.622
FBgn0003261	Rm62	64	35.593	FBgn0032919	CG9253	64	36.499
FBgn0003261	Rm62	86	67.430	FBgn0035720	CG10077	76	70.914
FBgn0003261	Rm62	66	30.065	FBgn0266581	pit	50	30.172
FBgn0003261	Rm62	80	35.279	FBgn0029880	CG14443	59	36.748
FBgn0003261	Rm62	68	33.019	FBgn0001942	eIF4A	91	33.590
FBgn0003261	Rm62	68	31.310	FBgn0004419	me31B	87	32.115
FBgn0003261	Rm62	69	33.856	FBgn0037573	CG7483	93	34.015
FBgn0003261	Rm62	72	42.775	FBgn0263231	bel	61	40.329
FBgn0003261	Rm62	71	31.487	FBgn0010220	Dbp45A	67	32.964
FBgn0003261	Rm62	69	30.031	FBgn0024804	Dbp80	79	31.436
FBgn0003261	Rm62	71	39.277	FBgn0283442	vas	57	40.260
FBgn0003261	Rm62	80	42.120	FBgn0036104	CG6418	55	41.084

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005515	protein binding	12368261.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	25294944.	HDA	Component
GO:0005634	nucleus	15492211.	IC	Component
GO:0005634	nucleus	21300896.	IDA	Component
GO:0005700	polytene chromosome	20196121.	IDA	Component
GO:0005703	polytene chromosome puff	16598038.	IDA	Component
GO:0005737	cytoplasm	24292889.	HDA	Component
GO:0016246	RNA interference	12368261.	IMP	Process
GO:0019730	antimicrobial humoral response	16163390.	IMP	Process
GO:0050688	regulation of defense response to virus	25126784.	IMP	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component