EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0003275 (Gene tree)
Gene ID: 48312
Gene Symbol: RpII18
Alias: -
Full Name: RNA polymerase II 18kD subunit
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 603 bases
Position: chr3R:5371795-5372397
Accession: FBgn0003275
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0078433	RNA_pol_Rpb6	PF01192.22	9.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0078787	-	541	-	FBpp0078433	131 (aa)	-	Q24320

Gene Model

Click here to download FBgn0003275's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003275's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0003275	RpII18	79	72.115	ENSG00000100142	POLR2F	83	72.115	Homo_sapiens
FBgn0003275	RpII18	78	73.529	ENSAPOG00000002902	polr2f	78	71.569	Acanthochromis_polyacanthus
FBgn0003275	RpII18	79	72.115	ENSAMEG00000010331	POLR2F	80	72.115	Ailuropoda_melanoleuca
FBgn0003275	RpII18	89	65.812	ENSACIG00000000923	polr2f	63	85.000	Amphilophus_citrinellus
FBgn0003275	RpII18	78	72.549	ENSAOCG00000003182	polr2f	78	70.588	Amphiprion_ocellaris
FBgn0003275	RpII18	78	72.549	ENSAPEG00000012999	polr2f	78	70.588	Amphiprion_percula
FBgn0003275	RpII18	89	65.812	ENSATEG00000008929	polr2f	63	85.000	Anabas_testudineus
FBgn0003275	RpII18	79	72.115	ENSAPLG00000015235	POLR2F	81	72.115	Anas_platyrhynchos
FBgn0003275	RpII18	79	72.115	ENSACAG00000015288	POLR2F	80	72.115	Anolis_carolinensis
FBgn0003275	RpII18	79	72.115	ENSANAG00000020840	POLR2F	83	72.115	Aotus_nancymaae
FBgn0003275	RpII18	74	75.258	ENSACLG00000016129	polr2f	63	85.000	Astatotilapia_calliptera
FBgn0003275	RpII18	78	72.549	ENSAMXG00000012812	polr2f	78	70.588	Astyanax_mexicanus
FBgn0003275	RpII18	78	71.569	ENSBTAG00000004820	POLR2F	80	72.115	Bos_taurus
FBgn0003275	RpII18	65	72.941	WBGene00007355	rpb-6	75	64.078	Caenorhabditis_elegans
FBgn0003275	RpII18	79	72.115	ENSCJAG00000048241	POLR2F	83	72.115	Callithrix_jacchus
FBgn0003275	RpII18	79	72.115	ENSCAFG00000001437	POLR2F	80	72.115	Canis_familiaris
FBgn0003275	RpII18	79	72.115	ENSCHIG00000012907	POLR2F	80	72.115	Capra_hircus
FBgn0003275	RpII18	82	69.159	ENSTSYG00000008187	POLR2F	78	71.569	Carlito_syrichta
FBgn0003275	RpII18	79	72.115	ENSCAPG00000013419	POLR2F	79	72.115	Cavia_aperea
FBgn0003275	RpII18	78	71.569	ENSCPOG00000034094	POLR2F	80	72.115	Cavia_porcellus
FBgn0003275	RpII18	78	71.569	ENSCCAG00000036489	POLR2F	80	72.115	Cebus_capucinus
FBgn0003275	RpII18	79	72.115	ENSCATG00000041014	POLR2F	83	72.115	Cercocebus_atys
FBgn0003275	RpII18	78	71.569	ENSCLAG00000017167	POLR2F	80	72.115	Chinchilla_lanigera
FBgn0003275	RpII18	78	71.569	ENSCSAG00000006862	POLR2F	80	72.115	Chlorocebus_sabaeus
FBgn0003275	RpII18	79	72.115	ENSCPBG00000023030	POLR2F	52	72.115	Chrysemys_picta_bellii
FBgn0003275	RpII18	76	69.697	ENSCING00000019359	-	69	69.697	Ciona_intestinalis
FBgn0003275	RpII18	79	72.115	ENSCANG00000041884	POLR2F	83	72.115	Colobus_angolensis_palliatus
FBgn0003275	RpII18	78	71.569	ENSCGRG00001023541	POLR2F	80	72.115	Cricetulus_griseus_chok1gshd
FBgn0003275	RpII18	78	71.569	ENSCGRG00000011921	POLR2F	80	72.115	Cricetulus_griseus_crigri
FBgn0003275	RpII18	78	72.549	ENSCSEG00000006848	polr2f	78	70.588	Cynoglossus_semilaevis
FBgn0003275	RpII18	98	64.062	ENSCVAG00000010437	polr2f	78	70.588	Cyprinodon_variegatus
FBgn0003275	RpII18	78	72.549	ENSDARG00000036625	polr2f	78	70.588	Danio_rerio
FBgn0003275	RpII18	78	71.569	ENSDNOG00000005884	POLR2F	80	72.115	Dasypus_novemcinctus
FBgn0003275	RpII18	78	71.569	ENSDORG00000024789	Polr2f	80	72.115	Dipodomys_ordii
FBgn0003275	RpII18	62	69.136	ENSEBUG00000002842	-	86	57.843	Eptatretus_burgeri
FBgn0003275	RpII18	66	58.889	ENSEBUG00000008509	polr2f	69	71.642	Eptatretus_burgeri
FBgn0003275	RpII18	55	69.444	ENSEASG00005018802	-	63	68.493	Equus_asinus_asinus
FBgn0003275	RpII18	79	70.192	ENSEEUG00000011014	POLR2F	79	70.192	Erinaceus_europaeus
FBgn0003275	RpII18	89	65.812	ENSELUG00000000319	polr2f	63	85.000	Esox_lucius
FBgn0003275	RpII18	79	72.115	ENSFCAG00000002806	POLR2F	83	72.115	Felis_catus
FBgn0003275	RpII18	78	71.569	ENSFDAG00000009926	POLR2F	80	72.115	Fukomys_damarensis
FBgn0003275	RpII18	95	64.000	ENSFHEG00000005448	polr2f	79	70.588	Fundulus_heteroclitus
FBgn0003275	RpII18	95	64.800	ENSGMOG00000009967	polr2f	63	85.000	Gadus_morhua
FBgn0003275	RpII18	78	71.569	ENSGALG00000012291	POLR2F	78	71.569	Gallus_gallus
FBgn0003275	RpII18	98	64.062	ENSGAFG00000017573	polr2f	78	70.588	Gambusia_affinis
FBgn0003275	RpII18	89	65.600	ENSGACG00000007322	polr2f	77	70.297	Gasterosteus_aculeatus
FBgn0003275	RpII18	79	72.115	ENSGAGG00000021757	POLR2F	80	72.115	Gopherus_agassizii
FBgn0003275	RpII18	79	72.115	ENSGGOG00000005213	POLR2F	83	72.115	Gorilla_gorilla
FBgn0003275	RpII18	74	75.258	ENSHBUG00000022089	polr2f	63	85.000	Haplochromis_burtoni
FBgn0003275	RpII18	78	71.569	ENSHGLG00000018942	POLR2F	80	72.115	Heterocephalus_glaber_female
FBgn0003275	RpII18	79	72.115	ENSHGLG00100012851	POLR2F	80	72.115	Heterocephalus_glaber_male
FBgn0003275	RpII18	74	74.227	ENSHCOG00000006149	polr2f	63	83.750	Hippocampus_comes
FBgn0003275	RpII18	76	74.000	ENSIPUG00000000814	polr2f	100	72.000	Ictalurus_punctatus
FBgn0003275	RpII18	78	71.569	ENSSTOG00000025722	POLR2F	80	72.115	Ictidomys_tridecemlineatus
FBgn0003275	RpII18	78	71.569	ENSJJAG00000008097	Polr2f	80	72.115	Jaculus_jaculus
FBgn0003275	RpII18	78	72.549	ENSKMAG00000014230	polr2f	78	70.588	Kryptolebias_marmoratus
FBgn0003275	RpII18	88	66.087	ENSLBEG00000008383	polr2f	82	68.627	Labrus_bergylta
FBgn0003275	RpII18	82	72.897	ENSLACG00000003931	POLR2F	78	72.549	Latimeria_chalumnae
FBgn0003275	RpII18	81	72.642	ENSLOCG00000011827	polr2f	75	71.287	Lepisosteus_oculatus
FBgn0003275	RpII18	78	71.569	ENSLAFG00000012632	POLR2F	80	72.115	Loxodonta_africana
FBgn0003275	RpII18	79	72.115	ENSMFAG00000033687	POLR2F	83	72.115	Macaca_fascicularis
FBgn0003275	RpII18	79	72.115	ENSMMUG00000038231	POLR2F	83	72.115	Macaca_mulatta
FBgn0003275	RpII18	79	72.115	ENSMNEG00000044365	POLR2F	83	72.115	Macaca_nemestrina
FBgn0003275	RpII18	79	72.115	ENSMLEG00000033077	POLR2F	83	72.115	Mandrillus_leucophaeus
FBgn0003275	RpII18	88	66.957	ENSMAMG00000008056	polr2f	63	85.000	Mastacembelus_armatus
FBgn0003275	RpII18	74	75.258	ENSMZEG00005005705	polr2f	63	85.000	Maylandia_zebra
FBgn0003275	RpII18	78	71.569	ENSMGAG00000012504	POLR2F	78	71.569	Meleagris_gallopavo
FBgn0003275	RpII18	78	71.569	ENSMAUG00000018586	Polr2f	80	72.115	Mesocricetus_auratus
FBgn0003275	RpII18	79	72.115	ENSMICG00000013128	POLR2F	83	72.115	Microcebus_murinus
FBgn0003275	RpII18	78	71.569	ENSMOCG00000000237	Polr2f	80	72.115	Microtus_ochrogaster
FBgn0003275	RpII18	78	72.549	ENSMMOG00000005106	polr2f	78	70.588	Mola_mola
FBgn0003275	RpII18	78	71.569	ENSMODG00000019063	POLR2F	78	71.569	Monodelphis_domestica
FBgn0003275	RpII18	78	72.549	ENSMALG00000001444	polr2f	78	70.588	Monopterus_albus
FBgn0003275	RpII18	78	71.569	MGP_CAROLIEiJ_G0020006	Polr2f	80	72.115	Mus_caroli
FBgn0003275	RpII18	78	71.569	ENSMUSG00000033020	Polr2f	80	72.115	Mus_musculus
FBgn0003275	RpII18	78	71.569	MGP_PahariEiJ_G0020008	Polr2f	80	72.115	Mus_pahari
FBgn0003275	RpII18	78	71.569	MGP_SPRETEiJ_G0020904	Polr2f	80	72.115	Mus_spretus
FBgn0003275	RpII18	79	72.115	ENSMPUG00000012997	POLR2F	80	72.115	Mustela_putorius_furo
FBgn0003275	RpII18	76	70.707	ENSMLUG00000029612	-	78	71.287	Myotis_lucifugus
FBgn0003275	RpII18	78	69.231	ENSMLUG00000014315	-	80	69.811	Myotis_lucifugus
FBgn0003275	RpII18	78	71.569	ENSNGAG00000020682	Polr2f	80	72.115	Nannospalax_galili
FBgn0003275	RpII18	89	65.812	ENSNBRG00000002492	polr2f	63	85.000	Neolamprologus_brichardi
FBgn0003275	RpII18	79	72.115	ENSNLEG00000014987	-	83	72.115	Nomascus_leucogenys
FBgn0003275	RpII18	78	71.569	ENSODEG00000014123	POLR2F	80	72.115	Octodon_degus
FBgn0003275	RpII18	89	65.812	ENSONIG00000008394	polr2f	63	85.000	Oreochromis_niloticus
FBgn0003275	RpII18	79	72.115	ENSOANG00000014684	POLR2F	80	72.115	Ornithorhynchus_anatinus
FBgn0003275	RpII18	78	71.569	ENSOCUG00000012064	POLR2F	80	72.115	Oryctolagus_cuniculus
FBgn0003275	RpII18	95	67.188	ENSORLG00000014580	polr2f	78	69.608	Oryzias_latipes
FBgn0003275	RpII18	95	67.969	ENSORLG00020006910	polr2f	78	70.588	Oryzias_latipes_hni
FBgn0003275	RpII18	85	59.821	ENSORLG00015015332	polr2f	58	68.539	Oryzias_latipes_hsok
FBgn0003275	RpII18	78	56.863	ENSOMEG00000006530	polr2f	51	58.427	Oryzias_melastigma
FBgn0003275	RpII18	78	71.569	ENSOGAG00000025463	POLR2F	80	72.115	Otolemur_garnettii
FBgn0003275	RpII18	78	71.569	ENSOARG00000014692	POLR2F	80	72.115	Ovis_aries
FBgn0003275	RpII18	79	72.115	ENSPPAG00000024276	POLR2F	83	72.115	Pan_paniscus
FBgn0003275	RpII18	79	72.115	ENSPPRG00000013030	POLR2F	83	72.115	Panthera_pardus
FBgn0003275	RpII18	80	69.524	ENSPTIG00000000632	POLR2F	67	83.750	Panthera_tigris_altaica
FBgn0003275	RpII18	79	72.115	ENSPTRG00000014356	POLR2F	83	72.115	Pan_troglodytes
FBgn0003275	RpII18	79	72.115	ENSPANG00000023979	POLR2F	83	72.115	Papio_anubis
FBgn0003275	RpII18	78	72.549	ENSPKIG00000002464	polr2f	78	70.588	Paramormyrops_kingsleyae
FBgn0003275	RpII18	54	85.915	ENSPSIG00000013913	POLR2F	100	85.915	Pelodiscus_sinensis
FBgn0003275	RpII18	78	72.549	ENSPMGG00000009619	polr2f	78	70.588	Periophthalmus_magnuspinnatus
FBgn0003275	RpII18	78	71.569	ENSPEMG00000008322	Polr2f	80	72.115	Peromyscus_maniculatus_bairdii
FBgn0003275	RpII18	78	71.569	ENSPCIG00000012000	-	78	71.569	Phascolarctos_cinereus
FBgn0003275	RpII18	98	64.062	ENSPFOG00000000139	polr2f	78	70.588	Poecilia_formosa
FBgn0003275	RpII18	98	64.062	ENSPLAG00000000988	polr2f	78	70.588	Poecilia_latipinna
FBgn0003275	RpII18	98	64.062	ENSPMEG00000019063	polr2f	78	70.588	Poecilia_mexicana
FBgn0003275	RpII18	76	60.606	ENSPREG00000016749	polr2f	71	68.493	Poecilia_reticulata
FBgn0003275	RpII18	78	71.569	ENSPPYG00000011809	POLR2F	80	72.115	Pongo_abelii
FBgn0003275	RpII18	79	72.115	ENSPCOG00000025716	POLR2F	83	72.115	Propithecus_coquereli
FBgn0003275	RpII18	74	75.258	ENSPNYG00000019790	polr2f	63	85.000	Pundamilia_nyererei
FBgn0003275	RpII18	78	72.549	ENSPNAG00000009017	polr2f	78	70.588	Pygocentrus_nattereri
FBgn0003275	RpII18	78	71.569	ENSRNOG00000011214	Polr2f	80	72.115	Rattus_norvegicus
FBgn0003275	RpII18	79	72.115	ENSRBIG00000044878	POLR2F	83	72.115	Rhinopithecus_bieti
FBgn0003275	RpII18	79	72.115	ENSRROG00000019586	POLR2F	83	72.115	Rhinopithecus_roxellana
FBgn0003275	RpII18	62	71.605	YPR187W	RPO26	52	72.500	Saccharomyces_cerevisiae
FBgn0003275	RpII18	79	72.115	ENSSBOG00000023340	POLR2F	83	72.115	Saimiri_boliviensis_boliviensis
FBgn0003275	RpII18	78	71.569	ENSSHAG00000008502	POLR2F	78	71.569	Sarcophilus_harrisii
FBgn0003275	RpII18	74	75.258	ENSSFOG00015012810	polr2f	63	85.000	Scleropages_formosus
FBgn0003275	RpII18	78	72.549	ENSSMAG00000005354	polr2f	78	70.588	Scophthalmus_maximus
FBgn0003275	RpII18	78	72.549	ENSSDUG00000016273	polr2f	78	70.588	Seriola_dumerili
FBgn0003275	RpII18	78	72.549	ENSSLDG00000024895	polr2f	78	70.588	Seriola_lalandi_dorsalis
FBgn0003275	RpII18	79	72.115	ENSSPUG00000011343	POLR2F	80	72.115	Sphenodon_punctatus
FBgn0003275	RpII18	74	75.258	ENSSPAG00000019646	polr2f	63	85.000	Stegastes_partitus
FBgn0003275	RpII18	78	71.569	ENSSSCG00000000116	POLR2F	80	72.115	Sus_scrofa
FBgn0003275	RpII18	56	70.667	ENSTGUG00000016504	-	82	70.667	Taeniopygia_guttata
FBgn0003275	RpII18	78	71.569	ENSTGUG00000010476	POLR2F	74	72.115	Taeniopygia_guttata
FBgn0003275	RpII18	78	72.549	ENSTRUG00000021130	polr2f	56	70.588	Takifugu_rubripes
FBgn0003275	RpII18	78	72.549	ENSTNIG00000010827	polr2f	78	70.588	Tetraodon_nigroviridis
FBgn0003275	RpII18	79	72.115	ENSUAMG00000020504	POLR2F	80	72.115	Ursus_americanus
FBgn0003275	RpII18	79	72.115	ENSUMAG00000015052	POLR2F	80	72.115	Ursus_maritimus
FBgn0003275	RpII18	79	72.115	ENSVVUG00000024021	POLR2F	77	72.115	Vulpes_vulpes
FBgn0003275	RpII18	82	71.028	ENSXETG00000006346	polr2f	78	70.588	Xenopus_tropicalis
FBgn0003275	RpII18	98	64.062	ENSXCOG00000015983	polr2f	78	70.588	Xiphophorus_couchianus
FBgn0003275	RpII18	98	64.062	ENSXMAG00000001559	polr2f	78	70.588	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0001055	RNA polymerase II activity	21873635.	IBA	Function
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0005665	RNA polymerase II, core complex	21873635.	IBA	Component
GO:0005665	RNA polymerase II, core complex	8325487.	IDA	Component
GO:0005665	RNA polymerase II, core complex	10908585.	ISS	Component
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0006366	transcription by RNA polymerase II	10908585.	ISS	Process