EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
FBgn0003277 (Gene tree)
Gene ID
32100
Gene Symbol
RpII215
Alias
-
Full Name
RNA polymerase II 215kD subunit
Gene Type
protein_coding
Species
Drosophila_melanogaster
Status
confidence
Strand
Minus strand
Length
7527 bases
Position
chrX:11562800-11570326
Accession
FBgn0003277
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
FBpp0073387RNA_pol_Rpb1_5PF04998.172.1e-10011
FBpp0073387RNA_pol_Rpb1_4PF05000.171.5e-3711
FBpp0073387RNA_pol_Rpb1_2PF00623.202.9e-7411
FBpp0073387RNA_pol_Rpb1_3PF04983.182.2e-5011
FBpp0073387RNA_pol_Rpb1_1PF04997.124.3e-10811
FBpp0073387RNA_pol_Rpb1_7PF04990.125.2e-5511
FBpp0073387RNA_pol_Rpb1_6PF04992.145.4e-6511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27197210The mRNA-bound proteome of the early fly embryoIC & embryos2016 Apr 28Wessels HHDOI: 10.1101/gr.200386.115
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
FBtr0073542-6736-FBpp00733871887 (aa)-P04052
Gene Model
Click here to download FBgn0003277's gene model file
Protein-Protein Interaction (PPI)

Clik here to download FBgn0003277's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
FBgn0003277RpII2155446.667FBgn0019938RpI16446.667
FBgn0003277RpII2156937.935FBgn0030687CG172099237.935
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
FBgn0003277RpII2158575.217ENSAPOG00000006552polr2a9169.646Acanthochromis_polyacanthus
FBgn0003277RpII2159974.564ENSAMEG00000016265-9969.778Ailuropoda_melanoleuca
FBgn0003277RpII2159974.658ENSACIG00000015982polr2a9968.516Amphilophus_citrinellus
FBgn0003277RpII2159174.471ENSAOCG00000004255polr2a9970.489Amphiprion_ocellaris
FBgn0003277RpII2159974.471ENSAPEG00000012623polr2a9970.148Amphiprion_percula
FBgn0003277RpII2159974.471ENSATEG00000019644polr2a9970.148Anabas_testudineus
FBgn0003277RpII2159975.016ENSACAG00000014561POLR2A9970.100Anolis_carolinensis
FBgn0003277RpII2159974.828ENSANAG00000020093-9969.995Aotus_nancymaae
FBgn0003277RpII2159974.471ENSACLG00000006735polr2a9970.148Astatotilapia_calliptera
FBgn0003277RpII2159974.424ENSAMXG00000020046polr2a9970.111Astyanax_mexicanus
FBgn0003277RpII2159974.828ENSBTAG00000046765POLR2A9969.995Bos_taurus
FBgn0003277RpII2158474.766ENSCAFG00000016532POLR2A9969.551Canis_familiaris
FBgn0003277RpII2159973.829ENSCAFG00020007929-9969.149Canis_lupus_dingo
FBgn0003277RpII2159974.828ENSCHIG00000027173-9969.995Capra_hircus
FBgn0003277RpII2159974.264ENSTSYG00000012803-9968.691Carlito_syrichta
FBgn0003277RpII2159675.669ENSCAPG00000001882-9969.407Cavia_aperea
FBgn0003277RpII2159775.627ENSCPOG00000014812-9969.519Cavia_porcellus
FBgn0003277RpII2159974.828ENSCCAG00000020938-9969.995Cebus_capucinus
FBgn0003277RpII2159974.828ENSCATG00000013680-9969.995Cercocebus_atys
FBgn0003277RpII2159974.766ENSCLAG00000012196-9969.942Chinchilla_lanigera
FBgn0003277RpII2159967.143ENSCSAG00000011644-9963.512Chlorocebus_sabaeus
FBgn0003277RpII2159273.846ENSCPBG00000012697POLR2A9374.772Chrysemys_picta_bellii
FBgn0003277RpII2159170.492ENSCING00000007884-9966.228Ciona_intestinalis
FBgn0003277RpII2159770.874ENSCSAVG00000008334-9966.807Ciona_savignyi
FBgn0003277RpII2159974.141ENSCANG00000010622-9969.414Colobus_angolensis_palliatus
FBgn0003277RpII2159672.197ENSCGRG00001003538Polr2a9967.113Cricetulus_griseus_chok1gshd
FBgn0003277RpII2159974.222ENSCSEG00000002635polr2a9969.937Cynoglossus_semilaevis
FBgn0003277RpII2159875.217ENSCVAG00000005156polr2a9970.095Cyprinodon_variegatus
FBgn0003277RpII2159875.513ENSDARG00000099966polr2a9970.728Danio_rerio
FBgn0003277RpII2159972.392ENSDNOG00000016482-9967.934Dasypus_novemcinctus
FBgn0003277RpII2159974.828ENSDORG00000008667Polr2a9969.995Dipodomys_ordii
FBgn0003277RpII2159369.024ENSETEG00000002540-8965.677Echinops_telfairi
FBgn0003277RpII2159874.953ENSEBUG00000013967polr2a9969.352Eptatretus_burgeri
FBgn0003277RpII2159972.511ENSEASG00005019114-9969.097Equus_asinus_asinus
FBgn0003277RpII2159974.828ENSECAG00000018485POLR2A9969.995Equus_caballus
FBgn0003277RpII2157876.991ENSEEUG00000001154-9476.991Erinaceus_europaeus
FBgn0003277RpII2159973.593ENSELUG00000014284polr2a9965.882Esox_lucius
FBgn0003277RpII2159974.891ENSFDAG00000008287-9970.048Fukomys_damarensis
FBgn0003277RpII2159175.217ENSFHEG00000001768polr2a9970.681Fundulus_heteroclitus
FBgn0003277RpII2158572.733ENSGMOG00000007725polr2a9475.161Gadus_morhua
FBgn0003277RpII2159675.676ENSGAFG00000005389polr2a9968.418Gambusia_affinis
FBgn0003277RpII2159872.596ENSGACG00000019366polr2a9971.911Gasterosteus_aculeatus
FBgn0003277RpII2159972.676ENSGGOG00000014800-9575.615Gorilla_gorilla
FBgn0003277RpII2159175.280ENSHBUG00000018937polr2a9970.734Haplochromis_burtoni
FBgn0003277RpII2159974.891ENSHGLG00000012381POLR2A9970.048Heterocephalus_glaber_female
FBgn0003277RpII2159974.891ENSHGLG00100014843POLR2A9970.048Heterocephalus_glaber_male
FBgn0003277RpII2159775.031ENSHCOG00000011874polr2a9969.937Hippocampus_comes
FBgn0003277RpII2159974.051ENSIPUG00000002613Polr2a9969.794Ictalurus_punctatus
FBgn0003277RpII2159974.828ENSSTOG00000001304-9969.995Ictidomys_tridecemlineatus
FBgn0003277RpII2159974.828ENSJJAG00000013049Polr2a9969.995Jaculus_jaculus
FBgn0003277RpII2158174.126ENSKMAG00000016343polr2a8375.042Kryptolebias_marmoratus
FBgn0003277RpII2159974.159ENSLBEG00000027652polr2a9969.884Labrus_bergylta
FBgn0003277RpII2159868.660ENSLACG00000012071POLR2A9964.377Latimeria_chalumnae
FBgn0003277RpII2159872.274ENSLOCG00000013863polr2a9676.175Lepisosteus_oculatus
FBgn0003277RpII2159974.828ENSLAFG00000008626-9969.995Loxodonta_africana
FBgn0003277RpII2155175.773ENSMFAG00000007042-9975.773Macaca_fascicularis
FBgn0003277RpII2159974.828ENSMMUG00000023620-9969.995Macaca_mulatta
FBgn0003277RpII2159974.516ENSMNEG00000040407-9969.889Macaca_nemestrina
FBgn0003277RpII2159870.770ENSMLEG00000030263-9975.773Mandrillus_leucophaeus
FBgn0003277RpII2159875.280ENSMAMG00000003351polr2a9970.148Mastacembelus_armatus
FBgn0003277RpII2159875.280ENSMZEG00005021429polr2a9970.148Maylandia_zebra
FBgn0003277RpII2155277.166ENSMAUG00000021055-9977.166Mesocricetus_auratus
FBgn0003277RpII2159974.766ENSMICG00000013372-9776.136Microcebus_murinus
FBgn0003277RpII2159972.528ENSMOCG00000018279Polr2a9968.263Microtus_ochrogaster
FBgn0003277RpII2158575.093ENSMMOG00000012515polr2a9670.576Mola_mola
FBgn0003277RpII2159974.766ENSMODG00000007009-9969.942Monodelphis_domestica
FBgn0003277RpII2159874.332ENSMALG00000008716polr2a9968.438Monopterus_albus
FBgn0003277RpII2159974.828MGP_CAROLIEiJ_G0016587Polr2a9969.995Mus_caroli
FBgn0003277RpII2159974.828ENSMUSG00000005198Polr2a9969.995Mus_musculus
FBgn0003277RpII2159973.072MGP_PahariEiJ_G0017718Polr2a9968.526Mus_pahari
FBgn0003277RpII2159974.828MGP_SPRETEiJ_G0017423Polr2a9969.995Mus_spretus
FBgn0003277RpII2159974.703ENSMPUG00000009648-9969.889Mustela_putorius_furo
FBgn0003277RpII2159974.298ENSMLUG00000009088-9969.551Myotis_lucifugus
FBgn0003277RpII2159974.828ENSNGAG00000002543Polr2a9969.995Nannospalax_galili
FBgn0003277RpII2159974.471ENSNBRG00000002005polr2a9968.362Neolamprologus_brichardi
FBgn0003277RpII2159974.264ENSNLEG00000009460-9968.740Nomascus_leucogenys
FBgn0003277RpII2158579.318ENSMEUG00000008611-8779.318Notamacropus_eugenii
FBgn0003277RpII2158275.563ENSOPRG00000015116-9875.580Ochotona_princeps
FBgn0003277RpII2159676.074ENSODEG00000017674-9969.658Octodon_degus
FBgn0003277RpII2159875.466ENSONIG00000009231polr2a9970.306Oreochromis_niloticus
FBgn0003277RpII2159873.905ENSOCUG00000017929-9968.774Oryctolagus_cuniculus
FBgn0003277RpII2159974.284ENSORLG00000006431polr2a9969.989Oryzias_latipes
FBgn0003277RpII2159974.284ENSORLG00020010235polr2a9969.989Oryzias_latipes_hni
FBgn0003277RpII2159974.284ENSORLG00015007075polr2a9969.989Oryzias_latipes_hsok
FBgn0003277RpII2158874.269ENSOMEG00000010713polr2a9875.902Oryzias_melastigma
FBgn0003277RpII2159974.735ENSOGAG00000033608-9969.868Otolemur_garnettii
FBgn0003277RpII2159974.417ENSPPAG00000043734-9969.604Pan_paniscus
FBgn0003277RpII2159974.264ENSPTRG00000008691POLR2A9968.740Pan_troglodytes
FBgn0003277RpII2159974.141ENSPANG00000024099-9969.414Papio_anubis
FBgn0003277RpII2157975.326ENSPKIG00000005727polr2a8478.261Paramormyrops_kingsleyae
FBgn0003277RpII2159172.405ENSPSIG00000014006POLR2A9972.589Pelodiscus_sinensis
FBgn0003277RpII2159974.396ENSPMGG00000019734polr2a9973.792Periophthalmus_magnuspinnatus
FBgn0003277RpII2159974.828ENSPEMG00000012521Polr2a9969.995Peromyscus_maniculatus_bairdii
FBgn0003277RpII2158474.782ENSPCIG00000028851-8273.951Phascolarctos_cinereus
FBgn0003277RpII2159075.217ENSPFOG00000007890polr2a9970.095Poecilia_formosa
FBgn0003277RpII2159075.217ENSPLAG00000007399polr2a9970.095Poecilia_latipinna
FBgn0003277RpII2159075.217ENSPMEG00000002071polr2a9970.095Poecilia_mexicana
FBgn0003277RpII2159974.346ENSPREG00000013122polr2a9970.042Poecilia_reticulata
FBgn0003277RpII2159178.296ENSPCAG00000006951-9178.296Procavia_capensis
FBgn0003277RpII2159974.208ENSPCOG00000025260-9969.469Propithecus_coquereli
FBgn0003277RpII2159974.641ENSPVAG00000005069-9969.836Pteropus_vampyrus
FBgn0003277RpII2159875.217ENSPNYG00000022340polr2a9970.095Pundamilia_nyererei
FBgn0003277RpII2159875.419ENSPNAG00000011237polr2a9970.269Pygocentrus_nattereri
FBgn0003277RpII2159974.766ENSRNOG00000028834Polr2a9969.942Rattus_norvegicus
FBgn0003277RpII2159974.264ENSRBIG00000002471-9969.133Rhinopithecus_bieti
FBgn0003277RpII2159774.828ENSRROG00000029583-9970.000Rhinopithecus_roxellana
FBgn0003277RpII2158549.785YDL140CRPO219947.034Saccharomyces_cerevisiae
FBgn0003277RpII2159974.828ENSSBOG00000000808-9969.995Saimiri_boliviensis_boliviensis
FBgn0003277RpII2159774.766ENSSHAG00000002858-9968.744Sarcophilus_harrisii
FBgn0003277RpII2159974.471ENSSFOG00015023275polr2a9970.148Scleropages_formosus
FBgn0003277RpII2159874.969ENSSMAG00000009137polr2a9970.259Scophthalmus_maximus
FBgn0003277RpII2159974.471ENSSDUG00000020466polr2a9970.148Seriola_dumerili
FBgn0003277RpII2159974.471ENSSLDG00000020613polr2a9970.148Seriola_lalandi_dorsalis
FBgn0003277RpII2159271.665ENSSARG00000005875-9968.044Sorex_araneus
FBgn0003277RpII2159975.280ENSSPAG00000016741polr2a9471.234Stegastes_partitus
FBgn0003277RpII2159974.079ENSSSCG00000028278-9969.361Sus_scrofa
FBgn0003277RpII2159867.537ENSTRUG00000012320polr2a8166.381Takifugu_rubripes
FBgn0003277RpII2159774.099ENSTNIG00000010136polr2a9967.410Tetraodon_nigroviridis
FBgn0003277RpII2157480.172ENSTBEG00000013294-5780.172Tupaia_belangeri
FBgn0003277RpII2159973.267ENSTTRG00000014273-9968.674Tursiops_truncatus
FBgn0003277RpII2159473.954ENSUAMG00000014866-9968.858Ursus_americanus
FBgn0003277RpII2159174.534ENSUMAG00000015732-9874.534Ursus_maritimus
FBgn0003277RpII2155977.409ENSVPAG00000008842-7677.076Vicugna_pacos
FBgn0003277RpII2159774.766ENSVVUG00000027878-9969.620Vulpes_vulpes
FBgn0003277RpII2159875.063ENSXETG00000012465polr2a9969.995Xenopus_tropicalis
FBgn0003277RpII2159074.346ENSXCOG00000001804polr2a9969.198Xiphophorus_couchianus
FBgn0003277RpII2159974.346ENSXMAG00000015687polr2a9970.042Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001055RNA polymerase II activity21873635.IBAFunction
GO:0003677DNA binding-IEAFunction
GO:0003899DNA-directed 5'-3' RNA polymerase activity21873635.IBAFunction
GO:0003899DNA-directed 5'-3' RNA polymerase activity3131761.7498740.IDAFunction
GO:0005634nucleus12021283.IDAComponent
GO:0005665RNA polymerase II, core complex21873635.IBAComponent
GO:0005665RNA polymerase II, core complex6417125.12021283.IDAComponent
GO:0005665RNA polymerase II, core complex10908585.ISSComponent
GO:0005700polytene chromosome19936620.IDAComponent
GO:0005703polytene chromosome puff6095263.9632819.19921261.IDAComponent
GO:0006366transcription by RNA polymerase II10908585.ISSProcess

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us