EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0003321 (Gene tree)
Gene ID: 43944
Gene Symbol: sbr
Alias: -
Full Name: small bristles
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 14341 bases
Position: chrX:10832752-10847092
Accession: FBgn0003321
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0073267	Tap-RNA_bind	PF09162.10	8.9e-12	1	1
FBpp0073267	TAP_C	PF03943.13	4.6e-20	1	1
FBpp0073267	NTF2	PF02136.20	4.2e-08	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0073411	-	3280	-	FBpp0073267	672 (aa)	-	Q9U1H9

Gene Model

Click here to download FBgn0003321's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003321's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0003321	sbr	87	32.323	ENSG00000162231	NXF1	85	32.323	Homo_sapiens
FBgn0003321	sbr	84	34.896	ENSAPOG00000016723	zgc:153681	82	35.702	Acanthochromis_polyacanthus
FBgn0003321	sbr	84	31.389	ENSAMEG00000006237	NXF1	85	31.395	Ailuropoda_melanoleuca
FBgn0003321	sbr	84	34.087	ENSACIG00000022505	zgc:153681	81	34.932	Amphilophus_citrinellus
FBgn0003321	sbr	84	33.508	ENSAOCG00000016998	zgc:153681	84	33.333	Amphiprion_ocellaris
FBgn0003321	sbr	84	34.201	ENSAPEG00000009821	zgc:153681	82	34.010	Amphiprion_percula
FBgn0003321	sbr	84	34.261	ENSATEG00000014432	zgc:153681	81	34.648	Anabas_testudineus
FBgn0003321	sbr	99	30.725	ENSACAG00000015804	-	84	33.219	Anolis_carolinensis
FBgn0003321	sbr	87	32.155	ENSANAG00000024600	NXF1	85	32.155	Aotus_nancymaae
FBgn0003321	sbr	84	32.727	ENSACLG00000017015	zgc:153681	84	32.581	Astatotilapia_calliptera
FBgn0003321	sbr	83	32.343	ENSAMXG00000005752	zgc:153681	79	33.217	Astyanax_mexicanus
FBgn0003321	sbr	83	32.456	ENSAMXG00000042571	nxf1	76	33.100	Astyanax_mexicanus
FBgn0003321	sbr	86	31.667	ENSBTAG00000009488	NXF1	84	31.926	Bos_taurus
FBgn0003321	sbr	87	32.323	ENSCJAG00000018635	NXF1	85	32.323	Callithrix_jacchus
FBgn0003321	sbr	95	30.757	ENSCAFG00000015594	NXF1	93	30.757	Canis_familiaris
FBgn0003321	sbr	71	47.059	ENSCAFG00000031569	-	79	47.059	Canis_familiaris
FBgn0003321	sbr	71	47.059	ENSCAFG00000028462	-	79	47.059	Canis_familiaris
FBgn0003321	sbr	95	30.757	ENSCAFG00020013149	NXF1	93	30.757	Canis_lupus_dingo
FBgn0003321	sbr	87	31.395	ENSCHIG00000010065	NXF1	85	31.650	Capra_hircus
FBgn0003321	sbr	69	30.426	ENSTSYG00000037237	-	99	30.426	Carlito_syrichta
FBgn0003321	sbr	87	31.987	ENSTSYG00000027468	NXF1	85	31.987	Carlito_syrichta
FBgn0003321	sbr	54	36.486	ENSCAPG00000011755	NXF1	60	36.757	Cavia_aperea
FBgn0003321	sbr	67	30.303	ENSCAPG00000012814	-	79	30.303	Cavia_aperea
FBgn0003321	sbr	87	32.155	ENSCPOG00000006126	NXF1	85	32.155	Cavia_porcellus
FBgn0003321	sbr	67	30.303	ENSCPOG00000003136	-	74	30.303	Cavia_porcellus
FBgn0003321	sbr	87	32.323	ENSCCAG00000030567	NXF1	85	32.323	Cebus_capucinus
FBgn0003321	sbr	87	32.323	ENSCATG00000044025	NXF1	100	33.051	Cercocebus_atys
FBgn0003321	sbr	87	32.155	ENSCLAG00000001490	NXF1	85	32.155	Chinchilla_lanigera
FBgn0003321	sbr	87	32.323	ENSCSAG00000006739	NXF1	85	32.323	Chlorocebus_sabaeus
FBgn0003321	sbr	83	32.281	ENSCPBG00000023836	-	79	32.281	Chrysemys_picta_bellii
FBgn0003321	sbr	87	32.323	ENSCANG00000043190	NXF1	85	32.323	Colobus_angolensis_palliatus
FBgn0003321	sbr	87	32.660	ENSCGRG00001013721	Nxf1	85	32.660	Cricetulus_griseus_chok1gshd
FBgn0003321	sbr	87	32.660	ENSCGRG00000013649	Nxf1	85	32.660	Cricetulus_griseus_crigri
FBgn0003321	sbr	84	33.913	ENSCSEG00000005777	zgc:153681	80	34.783	Cynoglossus_semilaevis
FBgn0003321	sbr	84	34.087	ENSCVAG00000006404	zgc:153681	84	33.898	Cyprinodon_variegatus
FBgn0003321	sbr	84	33.798	ENSDARG00000055076	nxf1	78	33.800	Danio_rerio
FBgn0003321	sbr	66	32.819	ENSDARG00000086017	zgc:153681	100	30.093	Danio_rerio
FBgn0003321	sbr	66	31.947	ENSDNOG00000016293	-	71	31.947	Dasypus_novemcinctus
FBgn0003321	sbr	66	30.263	ENSDNOG00000013182	-	72	30.263	Dasypus_novemcinctus
FBgn0003321	sbr	98	31.034	ENSDNOG00000024303	NXF1	88	31.929	Dasypus_novemcinctus
FBgn0003321	sbr	82	32.558	ENSDORG00000015692	Nxf1	97	32.558	Dipodomys_ordii
FBgn0003321	sbr	64	30.385	ENSETEG00000011316	NXF1	71	30.455	Echinops_telfairi
FBgn0003321	sbr	65	32.426	ENSEBUG00000013841	nxf1	90	32.426	Eptatretus_burgeri
FBgn0003321	sbr	69	34.534	ENSEASG00005011368	NXF1	100	34.534	Equus_asinus_asinus
FBgn0003321	sbr	89	31.588	ENSECAG00000001426	NXF1	96	31.588	Equus_caballus
FBgn0003321	sbr	87	31.987	ENSEEUG00000002385	NXF1	85	31.987	Erinaceus_europaeus
FBgn0003321	sbr	83	30.998	ENSELUG00000015926	nxf1	84	31.993	Esox_lucius
FBgn0003321	sbr	69	33.333	ENSELUG00000008534	zgc:153681	98	34.183	Esox_lucius
FBgn0003321	sbr	86	32.095	ENSFCAG00000014774	NXF1	85	32.095	Felis_catus
FBgn0003321	sbr	53	30.623	ENSFCAG00000013704	-	89	30.623	Felis_catus
FBgn0003321	sbr	87	32.660	ENSFDAG00000011867	NXF1	85	32.660	Fukomys_damarensis
FBgn0003321	sbr	83	33.741	ENSFHEG00000002375	zgc:153681	81	33.800	Fundulus_heteroclitus
FBgn0003321	sbr	75	33.226	ENSGMOG00000008744	zgc:153681	71	33.022	Gadus_morhua
FBgn0003321	sbr	83	31.579	ENSGALG00000032057	-	81	31.579	Gallus_gallus
FBgn0003321	sbr	85	33.733	ENSGAFG00000016728	zgc:153681	78	33.786	Gambusia_affinis
FBgn0003321	sbr	83	32.867	ENSGACG00000016934	zgc:153681	80	33.857	Gasterosteus_aculeatus
FBgn0003321	sbr	87	32.323	ENSGGOG00000001911	NXF1	85	32.323	Gorilla_gorilla
FBgn0003321	sbr	84	34.549	ENSHBUG00000012886	zgc:153681	83	34.349	Haplochromis_burtoni
FBgn0003321	sbr	87	31.818	ENSHGLG00000002936	NXF1	85	31.818	Heterocephalus_glaber_female
FBgn0003321	sbr	87	31.818	ENSHGLG00100014360	NXF1	85	31.818	Heterocephalus_glaber_male
FBgn0003321	sbr	83	33.800	ENSIPUG00000020856	nxf1	79	33.800	Ictalurus_punctatus
FBgn0003321	sbr	67	33.479	ENSIPUG00000019958	zgc:153681	81	31.239	Ictalurus_punctatus
FBgn0003321	sbr	87	31.987	ENSSTOG00000004463	NXF1	85	31.987	Ictidomys_tridecemlineatus
FBgn0003321	sbr	87	32.323	ENSJJAG00000017480	Nxf1	85	32.323	Jaculus_jaculus
FBgn0003321	sbr	83	34.326	ENSKMAG00000004060	zgc:153681	76	35.201	Kryptolebias_marmoratus
FBgn0003321	sbr	83	33.566	ENSLBEG00000006016	zgc:153681	80	33.276	Labrus_bergylta
FBgn0003321	sbr	88	30.795	ENSLACG00000001232	zgc:153681	84	30.795	Latimeria_chalumnae
FBgn0003321	sbr	84	31.724	ENSLOCG00000001254	zgc:153681	96	31.738	Lepisosteus_oculatus
FBgn0003321	sbr	87	32.323	ENSLAFG00000006778	NXF1	85	32.323	Loxodonta_africana
FBgn0003321	sbr	87	32.323	ENSMFAG00000045399	NXF1	100	33.051	Macaca_fascicularis
FBgn0003321	sbr	87	32.323	ENSMMUG00000000188	NXF1	94	32.323	Macaca_mulatta
FBgn0003321	sbr	87	32.323	ENSMNEG00000034667	NXF1	85	32.323	Macaca_nemestrina
FBgn0003321	sbr	87	32.323	ENSMLEG00000026574	NXF1	85	32.323	Mandrillus_leucophaeus
FBgn0003321	sbr	83	31.937	ENSMAMG00000021573	zgc:153681	81	32.323	Mastacembelus_armatus
FBgn0003321	sbr	84	32.727	ENSMZEG00005004843	zgc:153681	84	32.581	Maylandia_zebra
FBgn0003321	sbr	87	32.828	ENSMAUG00000014572	Nxf1	85	32.828	Mesocricetus_auratus
FBgn0003321	sbr	87	32.492	ENSMICG00000000980	NXF1	85	32.492	Microcebus_murinus
FBgn0003321	sbr	80	33.333	ENSMOCG00000016364	Nxf2	87	33.333	Microtus_ochrogaster
FBgn0003321	sbr	83	32.275	ENSMOCG00000000939	Nxf1	82	32.275	Microtus_ochrogaster
FBgn0003321	sbr	83	31.162	ENSMMOG00000002860	zgc:153681	79	31.687	Mola_mola
FBgn0003321	sbr	84	30.508	ENSMODG00000014379	-	87	30.016	Monodelphis_domestica
FBgn0003321	sbr	83	32.750	ENSMODG00000008085	-	80	32.750	Monodelphis_domestica
FBgn0003321	sbr	69	32.981	ENSMALG00000012057	zgc:153681	100	32.981	Monopterus_albus
FBgn0003321	sbr	83	31.404	MGP_CAROLIEiJ_G0022651	Nxf1	81	31.404	Mus_caroli
FBgn0003321	sbr	80	37.500	MGP_CAROLIEiJ_G0033404	Nxf7	86	37.500	Mus_caroli
FBgn0003321	sbr	75	32.961	ENSMUSG00000009941	Nxf2	70	32.961	Mus_musculus
FBgn0003321	sbr	87	31.313	ENSMUSG00000010097	Nxf1	85	31.313	Mus_musculus
FBgn0003321	sbr	80	37.500	ENSMUSG00000031410	Nxf7	86	37.500	Mus_musculus
FBgn0003321	sbr	80	37.500	MGP_PahariEiJ_G0031944	Nxf7	99	37.500	Mus_pahari
FBgn0003321	sbr	79	30.544	MGP_PahariEiJ_G0031942	Nxf2	70	30.544	Mus_pahari
FBgn0003321	sbr	87	32.323	MGP_PahariEiJ_G0014146	Nxf1	85	32.323	Mus_pahari
FBgn0003321	sbr	75	34.078	MGP_SPRETEiJ_G0034566	Nxf2	67	38.095	Mus_spretus
FBgn0003321	sbr	80	37.500	MGP_SPRETEiJ_G0034573	Nxf7	86	37.500	Mus_spretus
FBgn0003321	sbr	84	31.937	ENSMPUG00000013658	NXF1	85	31.926	Mustela_putorius_furo
FBgn0003321	sbr	87	31.933	ENSMLUG00000011131	NXF1	85	31.933	Myotis_lucifugus
FBgn0003321	sbr	87	32.663	ENSNGAG00000001539	Nxf1	85	32.663	Nannospalax_galili
FBgn0003321	sbr	84	34.435	ENSNBRG00000001167	zgc:153681	90	30.126	Neolamprologus_brichardi
FBgn0003321	sbr	69	34.322	ENSNLEG00000004123	-	100	34.322	Nomascus_leucogenys
FBgn0003321	sbr	59	31.051	ENSMEUG00000004762	-	99	31.051	Notamacropus_eugenii
FBgn0003321	sbr	87	32.155	ENSODEG00000001620	NXF1	86	32.155	Octodon_degus
FBgn0003321	sbr	84	34.783	ENSONIG00000005347	zgc:153681	83	34.576	Oreochromis_niloticus
FBgn0003321	sbr	86	41.176	ENSOCUG00000004154	-	80	41.176	Oryctolagus_cuniculus
FBgn0003321	sbr	98	31.304	ENSOCUG00000009503	NXF1	85	32.997	Oryctolagus_cuniculus
FBgn0003321	sbr	84	36.585	ENSOCUG00000015043	-	92	36.585	Oryctolagus_cuniculus
FBgn0003321	sbr	83	33.566	ENSORLG00000002462	zgc:153681	83	34.179	Oryzias_latipes
FBgn0003321	sbr	83	33.741	ENSORLG00020001030	zgc:153681	83	34.349	Oryzias_latipes_hni
FBgn0003321	sbr	83	33.392	ENSORLG00015016982	zgc:153681	83	34.010	Oryzias_latipes_hsok
FBgn0003321	sbr	83	33.916	ENSOMEG00000018487	zgc:153681	80	33.916	Oryzias_melastigma
FBgn0003321	sbr	66	30.263	ENSOGAG00000000476	-	74	30.263	Otolemur_garnettii
FBgn0003321	sbr	87	32.040	ENSOGAG00000008901	NXF1	85	32.040	Otolemur_garnettii
FBgn0003321	sbr	87	31.395	ENSOARG00000017354	NXF1	85	31.650	Ovis_aries
FBgn0003321	sbr	87	32.323	ENSPPAG00000041498	NXF1	85	32.323	Pan_paniscus
FBgn0003321	sbr	86	32.095	ENSPPRG00000004342	NXF1	85	32.095	Panthera_pardus
FBgn0003321	sbr	53	30.081	ENSPTIG00000019117	-	89	30.081	Panthera_tigris_altaica
FBgn0003321	sbr	95	30.757	ENSPTIG00000008897	NXF1	92	30.757	Panthera_tigris_altaica
FBgn0003321	sbr	87	45.098	ENSPTRG00000048802	-	97	30.123	Pan_troglodytes
FBgn0003321	sbr	87	32.323	ENSPTRG00000003791	NXF1	85	32.323	Pan_troglodytes
FBgn0003321	sbr	87	32.492	ENSPANG00000012132	NXF1	100	33.051	Papio_anubis
FBgn0003321	sbr	83	33.042	ENSPKIG00000025205	zgc:153681	85	32.508	Paramormyrops_kingsleyae
FBgn0003321	sbr	88	30.885	ENSPSIG00000006185	-	84	30.885	Pelodiscus_sinensis
FBgn0003321	sbr	83	32.918	ENSPMGG00000004997	zgc:153681	85	32.432	Periophthalmus_magnuspinnatus
FBgn0003321	sbr	87	31.313	ENSPEMG00000006139	Nxf1	79	44.000	Peromyscus_maniculatus_bairdii
FBgn0003321	sbr	89	31.699	ENSPCIG00000015226	-	95	31.699	Phascolarctos_cinereus
FBgn0003321	sbr	86	33.890	ENSPFOG00000009138	zgc:153681	85	33.890	Poecilia_formosa
FBgn0003321	sbr	84	34.087	ENSPLAG00000023447	zgc:153681	75	34.206	Poecilia_latipinna
FBgn0003321	sbr	84	34.087	ENSPMEG00000003718	zgc:153681	79	34.087	Poecilia_mexicana
FBgn0003321	sbr	85	33.901	ENSPREG00000015315	zgc:153681	83	33.556	Poecilia_reticulata
FBgn0003321	sbr	87	31.145	ENSPPYG00000003143	NXF1	85	31.145	Pongo_abelii
FBgn0003321	sbr	99	30.724	ENSPCAG00000016580	NXF1	85	32.155	Procavia_capensis
FBgn0003321	sbr	87	32.492	ENSPCOG00000024446	NXF1	85	32.492	Propithecus_coquereli
FBgn0003321	sbr	87	32.323	ENSPVAG00000003495	NXF1	85	32.323	Pteropus_vampyrus
FBgn0003321	sbr	84	34.549	ENSPNYG00000014692	zgc:153681	83	34.349	Pundamilia_nyererei
FBgn0003321	sbr	83	32.286	ENSPNAG00000001562	nxf1	79	32.810	Pygocentrus_nattereri
FBgn0003321	sbr	82	31.607	ENSPNAG00000027080	zgc:153681	78	31.009	Pygocentrus_nattereri
FBgn0003321	sbr	87	31.987	ENSRNOG00000019069	Nxf1	85	31.987	Rattus_norvegicus
FBgn0003321	sbr	87	32.323	ENSRBIG00000042508	NXF1	85	32.323	Rhinopithecus_bieti
FBgn0003321	sbr	87	32.323	ENSRROG00000044145	NXF1	85	32.323	Rhinopithecus_roxellana
FBgn0003321	sbr	87	32.323	ENSSBOG00000019587	NXF1	85	32.323	Saimiri_boliviensis_boliviensis
FBgn0003321	sbr	54	30.376	ENSSBOG00000020886	-	76	30.376	Saimiri_boliviensis_boliviensis
FBgn0003321	sbr	87	32.226	ENSSHAG00000001778	-	75	34.118	Sarcophilus_harrisii
FBgn0003321	sbr	89	32.026	ENSSHAG00000006407	-	86	32.026	Sarcophilus_harrisii
FBgn0003321	sbr	83	33.451	ENSSFOG00015007480	nxf1	80	33.451	Scleropages_formosus
FBgn0003321	sbr	84	33.217	ENSSMAG00000017675	zgc:153681	81	33.105	Scophthalmus_maximus
FBgn0003321	sbr	84	33.391	ENSSDUG00000017311	zgc:153681	78	34.261	Seriola_dumerili
FBgn0003321	sbr	83	32.509	ENSSLDG00000016066	zgc:153681	88	32.509	Seriola_lalandi_dorsalis
FBgn0003321	sbr	54	30.245	ENSSARG00000008458	-	76	30.245	Sorex_araneus
FBgn0003321	sbr	54	30.933	ENSSARG00000002390	-	64	30.933	Sorex_araneus
FBgn0003321	sbr	83	32.399	ENSSPUG00000008002	-	80	32.399	Sphenodon_punctatus
FBgn0003321	sbr	86	31.757	ENSSSCG00000022866	NXF1	73	31.757	Sus_scrofa
FBgn0003321	sbr	84	32.517	ENSTRUG00000013498	zgc:153681	86	32.692	Takifugu_rubripes
FBgn0003321	sbr	56	33.247	ENSTNIG00000016801	zgc:153681	79	32.754	Tetraodon_nigroviridis
FBgn0003321	sbr	71	31.070	ENSTBEG00000013651	NXF1	81	31.070	Tupaia_belangeri
FBgn0003321	sbr	84	30.702	ENSUAMG00000025875	NXF1	96	34.354	Ursus_americanus
FBgn0003321	sbr	84	32.112	ENSUMAG00000014552	NXF1	79	32.112	Ursus_maritimus
FBgn0003321	sbr	95	30.757	ENSVVUG00000029840	NXF1	93	30.757	Vulpes_vulpes
FBgn0003321	sbr	78	37.975	ENSVVUG00000005393	-	82	37.975	Vulpes_vulpes
FBgn0003321	sbr	83	33.275	ENSXETG00000019442	nxf1	81	33.275	Xenopus_tropicalis
FBgn0003321	sbr	83	32.750	ENSXCOG00000001516	zgc:153681	83	32.437	Xiphophorus_couchianus
FBgn0003321	sbr	84	32.635	ENSXMAG00000003154	zgc:153681	83	32.437	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005515	protein binding	14729961.18086857.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005635	nuclear envelope	11780633.14729961.	IDA	Component
GO:0005654	nucleoplasm	11780633.14729961.16598038.	IDA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006378	mRNA polyadenylation	19364924.	IMP	Process
GO:0006406	mRNA export from nucleus	11780634.	IMP	Process
GO:0006406	mRNA export from nucleus	12446149.	TAS	Process
GO:0016973	poly(A)+ mRNA export from nucleus	21873635.	IBA	Process
GO:0016973	poly(A)+ mRNA export from nucleus	11780633.	IMP	Process
GO:0031965	nuclear membrane	16598038.	IDA	Component
GO:0046833	positive regulation of RNA export from nucleus	14729961.	IMP	Process
GO:0047485	protein N-terminus binding	19364924.	IPI	Function
GO:0051168	nuclear export	19364924.	IMP	Process