EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0003392 (Gene tree)
Gene ID: 45928
Gene Symbol: shi
Alias: -
Full Name: shibire
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 14601
Position: chrX: 15892116-15906716
Accession: FBgn0003392
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0333717	-	3712	-	FBpp0305866	896 (aa)	-	M9PHQ0
FBtr0111037	-	4321	-	FBpp0110336	830 (aa)	-	A4V4J0
FBtr0074122	-	3991	-	FBpp0089279	830 (aa)	-	A4V4J0
FBtr0340413	-	3667	-	FBpp0309359	881 (aa)	-	M9PJN9
FBtr0074119	-	3878	-	FBpp0073929	830 (aa)	-	A4V4J0
FBtr0333718	-	4768	-	FBpp0305867	834 (aa)	-	E8NH48
FBtr0074118	-	4180	-	FBpp0073928	830 (aa)	-	A4V4J0
FBtr0074124	-	3190	-	FBpp0089277	877 (aa)	-	P27619
FBtr0074121	-	3990	-	FBpp0089278	830 (aa)	-	A4V4J0
FBtr0074123	-	3191	-	FBpp0089280	877 (aa)	-	P27619
FBtr0111036	-	4309	-	FBpp0110335	830 (aa)	-	A4V4J0
FBtr0301595	-	3300	-	FBpp0290810	877 (aa)	-	P27619
FBtr0301594	-	3380	-	FBpp0290809	877 (aa)	-	P27619
FBtr0301597	-	4198	-	FBpp0290812	836 (aa)	-	E1JJA5
FBtr0301596	-	3096	-	FBpp0290811	883 (aa)	-	E1JJA4

Gene Model

Click here to download FBgn0003392's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003392's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001661	conditioned taste aversion	19158309.	IMP	Process
GO:0001738	morphogenesis of a polarized epithelium	16326392.	IMP	Process
GO:0001933	negative regulation of protein phosphorylation	26021350.	IMP	Process
GO:0003779	actin binding	11076973.	IDA	Function
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	11301272.	NAS	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	25661871.	IDA	Component
GO:0005886	plasma membrane	21873635.	IBA	Component
GO:0005886	plasma membrane	11160392.25661871.	IDA	Component
GO:0006897	endocytosis	21613475.	IDA	Process
GO:0006897	endocytosis	16226242.18355807.20226669.	IMP	Process
GO:0006897	endocytosis	12563275.	TAS	Process
GO:0007268	chemical synaptic transmission	26341658.	IMP	Process
GO:0007291	sperm individualization	12432073.	IGI	Process
GO:0007291	sperm individualization	15829565.	IMP	Process
GO:0007298	border follicle cell migration	15944190.	IMP	Process
GO:0007349	cellularization	14588240.	IMP	Process
GO:0007349	cellularization	12563275.	TAS	Process
GO:0007424	open tracheal system development	14630942.	IMP	Process
GO:0007427	epithelial cell migration, open tracheal system	14630942.20516215.	IMP	Process
GO:0007435	salivary gland morphogenesis	16412417.	IMP	Process
GO:0007612	learning	16135747.	IMP	Process
GO:0007613	memory	14627633.16325586.16890528.	IMP	Process
GO:0007613	memory	11301272.11506873.	TAS	Process
GO:0007614	short-term memory	19158309.	IMP	Process
GO:0007637	proboscis extension reflex	16121192.	IMP	Process
GO:0008017	microtubule binding	21873635.	IBA	Function
GO:0008017	microtubule binding	11076973.	IDA	Function
GO:0008355	olfactory learning	15504331.	IDA	Process
GO:0010508	positive regulation of autophagy	26924690.	IMP	Process
GO:0014069	postsynaptic density	21873635.	IBA	Component
GO:0016020	membrane	21873635.	IBA	Component
GO:0016185	synaptic vesicle budding from presynaptic endocytic zone membrane	21873635.	IBA	Process
GO:0016185	synaptic vesicle budding from presynaptic endocytic zone membrane	15014125.	IMP	Process
GO:0016192	vesicle-mediated transport	12415277.	TAS	Process
GO:0030198	extracellular matrix organization	17558392.	IMP	Process
GO:0030424	axon	21873635.	IBA	Component
GO:0030536	larval feeding behavior	16150727.	IMP	Process
GO:0030707	ovarian follicle cell development	26205122.	IMP	Process
GO:0030838	positive regulation of actin filament polymerization	26021350.	IMP	Process
GO:0030866	cortical actin cytoskeleton organization	22648168.	IMP	Process
GO:0031410	cytoplasmic vesicle	21873635.	IBA	Component
GO:0031623	receptor internalization	21873635.	IBA	Process
GO:0032956	regulation of actin cytoskeleton organization	12432073.	IGI	Process
GO:0032970	regulation of actin filament-based process	12432073.	IGI	Process
GO:0034334	adherens junction maintenance	16326392.	IMP	Process
GO:0035152	regulation of tube architecture, open tracheal system	20516215.	IMP	Process
GO:0035186	syncytial blastoderm mitotic cell cycle	25661871.	IMP	Process
GO:0036465	synaptic vesicle recycling	24662566.	IMP	Process
GO:0040008	regulation of growth	20226669.	IMP	Process
GO:0043197	dendritic spine	21873635.	IBA	Component
GO:0044327	dendritic spine head	21873635.	IBA	Component
GO:0045202	synapse	21873635.	IBA	Component
GO:0045202	synapse	11018772.	IMP	Component
GO:0045211	postsynaptic membrane	21873635.	IBA	Component
GO:0045747	positive regulation of Notch signaling pathway	20226669.	IMP	Process
GO:0046667	compound eye retinal cell programmed cell death	19027066.	IMP	Process
GO:0046843	dorsal appendage formation	23545328.	IMP	Process
GO:0048172	regulation of short-term neuronal synaptic plasticity	10966613.	IMP	Process
GO:0048488	synaptic vesicle endocytosis	21029287.	IDA	Process
GO:0048488	synaptic vesicle endocytosis	14627659.15824135.	IMP	Process
GO:0048488	synaptic vesicle endocytosis	11301272.11697879.	TAS	Process
GO:0048489	synaptic vesicle transport	21106824.	IDA	Process
GO:0048499	synaptic vesicle membrane organization	10966613.	IMP	Process
GO:0050803	regulation of synapse structure or activity	21873635.	IBA	Process
GO:0050803	regulation of synapse structure or activity	16546084.	IMP	Process
GO:0061883	clathrin-dependent endocytosis involved in vitellogenesis	26265702.	IMP	Process
GO:0070864	sperm individualization complex	12432073.	IDA	Component
GO:0072583	clathrin-dependent endocytosis	17014698.	IMP	Process
GO:0072659	protein localization to plasma membrane	15897260.25661871.	IMP	Process
GO:0072686	mitotic spindle	25661871.	IDA	Component
GO:0090148	membrane fission	17014698.	IMP	Process
GO:0098844	postsynaptic endocytic zone membrane	21873635.	IBA	Component
GO:0098884	postsynaptic neurotransmitter receptor internalization	21873635.	IBA	Process
GO:0150007	clathrin-dependent synaptic vesicle endocytosis	20704589.	IMP	Process
GO:0150008	bulk synaptic vesicle endocytosis	20704589.	IMP	Process
GO:1903475	mitotic actomyosin contractile ring assembly	25661871.	IMP	Process