EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0003483 (Gene tree)
Gene ID: 41919
Gene Symbol: spn-E
Alias: -
Full Name: spindle E
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 6997 bases
Position: chr3R:15837419-15844415
Accession: FBgn0003483
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0082637	TUDOR	PF00567.24	7.9e-28	1	1
FBpp0082637	DEAD	PF00270.29	2.6e-11	1	1
FBpp0082637	HA2	PF04408.23	4.1e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0083183	-	4678	-	FBpp0082637	1434 (aa)	-	Q9VF26

Gene Model

Click here to download FBgn0003483's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003483's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0003483	spn-E	86	33.750	ENSG00000156414	TDRD9	93	31.707	Homo_sapiens
FBgn0003483	spn-E	82	32.541	ENSAPOG00000015220	tdrd9	90	32.705	Acanthochromis_polyacanthus
FBgn0003483	spn-E	86	34.014	ENSAMEG00000018095	TDRD9	88	34.014	Ailuropoda_melanoleuca
FBgn0003483	spn-E	77	46.429	ENSACIG00000024299	tdrd9	93	46.429	Amphilophus_citrinellus
FBgn0003483	spn-E	82	32.705	ENSAOCG00000007386	tdrd9	91	32.705	Amphiprion_ocellaris
FBgn0003483	spn-E	82	32.761	ENSAPEG00000023023	tdrd9	90	32.761	Amphiprion_percula
FBgn0003483	spn-E	81	32.496	ENSATEG00000015827	tdrd9	90	32.496	Anabas_testudineus
FBgn0003483	spn-E	80	32.942	ENSAPLG00000007429	TDRD9	96	32.942	Anas_platyrhynchos
FBgn0003483	spn-E	90	32.442	ENSACAG00000010862	TDRD9	86	33.847	Anolis_carolinensis
FBgn0003483	spn-E	86	33.046	ENSANAG00000020949	TDRD9	94	33.046	Aotus_nancymaae
FBgn0003483	spn-E	82	31.721	ENSACLG00000020660	tdrd9	87	31.721	Astatotilapia_calliptera
FBgn0003483	spn-E	79	32.594	ENSAMXG00000021360	tdrd9	89	32.627	Astyanax_mexicanus
FBgn0003483	spn-E	66	49.000	ENSBTAG00000020402	TDRD9	87	49.000	Bos_taurus
FBgn0003483	spn-E	86	33.176	ENSCJAG00000017235	TDRD9	93	33.176	Callithrix_jacchus
FBgn0003483	spn-E	77	32.641	ENSCAFG00000018311	TDRD9	98	32.641	Canis_familiaris
FBgn0003483	spn-E	86	34.248	ENSCAFG00020008631	TDRD9	99	31.736	Canis_lupus_dingo
FBgn0003483	spn-E	86	33.307	ENSCHIG00000011541	TDRD9	89	33.307	Capra_hircus
FBgn0003483	spn-E	86	33.856	ENSTSYG00000003253	TDRD9	93	32.014	Carlito_syrichta
FBgn0003483	spn-E	87	31.535	ENSCAPG00000009518	TDRD9	91	31.535	Cavia_aperea
FBgn0003483	spn-E	87	33.613	ENSCPOG00000002760	TDRD9	92	33.613	Cavia_porcellus
FBgn0003483	spn-E	86	34.250	ENSCCAG00000022528	TDRD9	89	34.250	Cebus_capucinus
FBgn0003483	spn-E	86	33.961	ENSCATG00000032905	TDRD9	89	33.961	Cercocebus_atys
FBgn0003483	spn-E	86	34.086	ENSCLAG00000006616	TDRD9	90	34.246	Chinchilla_lanigera
FBgn0003483	spn-E	86	34.167	ENSCSAG00000009835	TDRD9	89	34.167	Chlorocebus_sabaeus
FBgn0003483	spn-E	67	40.264	ENSCPBG00000020203	TDRD9	77	40.264	Chrysemys_picta_bellii
FBgn0003483	spn-E	88	32.952	ENSCING00000019779	-	99	32.952	Ciona_intestinalis
FBgn0003483	spn-E	71	40.634	ENSCSAVG00000002146	-	81	40.634	Ciona_savignyi
FBgn0003483	spn-E	86	33.882	ENSCANG00000031870	TDRD9	93	33.882	Colobus_angolensis_palliatus
FBgn0003483	spn-E	75	41.399	ENSCGRG00001023336	Tdrd9	88	33.882	Cricetulus_griseus_chok1gshd
FBgn0003483	spn-E	75	41.399	ENSCGRG00000004013	Tdrd9	88	33.882	Cricetulus_griseus_crigri
FBgn0003483	spn-E	82	31.908	ENSCSEG00000001411	tdrd9	89	31.908	Cynoglossus_semilaevis
FBgn0003483	spn-E	82	31.352	ENSCVAG00000007427	tdrd9	93	31.352	Cyprinodon_variegatus
FBgn0003483	spn-E	82	32.868	ENSDARG00000013453	tdrd9	87	32.868	Danio_rerio
FBgn0003483	spn-E	85	33.622	ENSDORG00000015167	Tdrd9	88	33.542	Dipodomys_ordii
FBgn0003483	spn-E	89	31.685	ENSEBUG00000010711	tdrd9	97	31.985	Eptatretus_burgeri
FBgn0003483	spn-E	86	33.752	ENSEASG00005004203	TDRD9	89	33.752	Equus_asinus_asinus
FBgn0003483	spn-E	86	33.698	ENSECAG00000023843	TDRD9	97	30.209	Equus_caballus
FBgn0003483	spn-E	82	33.788	ENSELUG00000010798	tdrd9	90	33.788	Esox_lucius
FBgn0003483	spn-E	86	33.464	ENSFCAG00000013807	TDRD9	89	33.386	Felis_catus
FBgn0003483	spn-E	85	33.018	ENSFALG00000002911	TDRD9	97	33.018	Ficedula_albicollis
FBgn0003483	spn-E	85	33.986	ENSFDAG00000004582	TDRD9	89	33.986	Fukomys_damarensis
FBgn0003483	spn-E	71	39.489	ENSFHEG00000008883	tdrd9	88	38.755	Fundulus_heteroclitus
FBgn0003483	spn-E	65	39.005	ENSGMOG00000010725	tdrd9	78	39.005	Gadus_morhua
FBgn0003483	spn-E	59	30.988	ENSGALG00000011565	TDRD9	97	30.988	Gallus_gallus
FBgn0003483	spn-E	78	31.458	ENSGACG00000008322	tdrd9	99	41.100	Gasterosteus_aculeatus
FBgn0003483	spn-E	82	34.457	ENSGGOG00000000812	TDRD9	84	34.457	Gorilla_gorilla
FBgn0003483	spn-E	86	34.348	ENSHGLG00000007727	TDRD9	89	34.348	Heterocephalus_glaber_female
FBgn0003483	spn-E	86	34.348	ENSHGLG00100019237	TDRD9	89	34.348	Heterocephalus_glaber_male
FBgn0003483	spn-E	82	32.382	ENSIPUG00000002814	tdrd9	88	32.382	Ictalurus_punctatus
FBgn0003483	spn-E	86	33.908	ENSSTOG00000007890	TDRD9	88	33.673	Ictidomys_tridecemlineatus
FBgn0003483	spn-E	86	34.062	ENSJJAG00000022462	Tdrd9	88	34.062	Jaculus_jaculus
FBgn0003483	spn-E	82	32.477	ENSKMAG00000005523	tdrd9	93	32.423	Kryptolebias_marmoratus
FBgn0003483	spn-E	82	33.306	ENSLBEG00000022006	tdrd9	88	33.306	Labrus_bergylta
FBgn0003483	spn-E	82	33.035	ENSLACG00000002257	TDRD9	91	32.518	Latimeria_chalumnae
FBgn0003483	spn-E	81	33.690	ENSLOCG00000009992	tdrd9	93	33.690	Lepisosteus_oculatus
FBgn0003483	spn-E	82	32.566	ENSLAFG00000007580	TDRD9	93	41.545	Loxodonta_africana
FBgn0003483	spn-E	86	33.984	ENSMFAG00000001293	TDRD9	93	31.823	Macaca_fascicularis
FBgn0003483	spn-E	86	33.984	ENSMMUG00000006243	TDRD9	93	33.984	Macaca_mulatta
FBgn0003483	spn-E	86	33.984	ENSMNEG00000044098	TDRD9	89	33.984	Macaca_nemestrina
FBgn0003483	spn-E	86	33.961	ENSMLEG00000032473	TDRD9	93	33.961	Mandrillus_leucophaeus
FBgn0003483	spn-E	82	32.730	ENSMAMG00000002068	tdrd9	89	32.730	Mastacembelus_armatus
FBgn0003483	spn-E	82	32.788	ENSMZEG00005007746	tdrd9	87	32.788	Maylandia_zebra
FBgn0003483	spn-E	82	33.662	ENSMGAG00000013431	TDRD9	95	33.413	Meleagris_gallopavo
FBgn0003483	spn-E	86	31.700	ENSMAUG00000020617	Tdrd9	88	31.700	Mesocricetus_auratus
FBgn0003483	spn-E	86	34.061	ENSMICG00000000428	TDRD9	89	33.827	Microcebus_murinus
FBgn0003483	spn-E	75	40.730	ENSMOCG00000017012	Tdrd9	88	33.490	Microtus_ochrogaster
FBgn0003483	spn-E	82	32.324	ENSMMOG00000013849	tdrd9	90	32.324	Mola_mola
FBgn0003483	spn-E	85	31.878	ENSMALG00000008927	tdrd9	87	32.520	Monopterus_albus
FBgn0003483	spn-E	87	33.048	MGP_CAROLIEiJ_G0018145	Tdrd9	96	44.256	Mus_caroli
FBgn0003483	spn-E	86	33.176	ENSMUSG00000054003	Tdrd9	96	44.528	Mus_musculus
FBgn0003483	spn-E	86	33.594	MGP_PahariEiJ_G0029902	Tdrd9	96	44.465	Mus_pahari
FBgn0003483	spn-E	87	33.307	MGP_SPRETEiJ_G0018994	Tdrd9	96	44.528	Mus_spretus
FBgn0003483	spn-E	79	32.967	ENSMPUG00000002286	TDRD9	97	32.769	Mustela_putorius_furo
FBgn0003483	spn-E	76	33.157	ENSMLUG00000011984	TDRD9	94	33.333	Myotis_lucifugus
FBgn0003483	spn-E	86	33.671	ENSNGAG00000021858	Tdrd9	89	33.671	Nannospalax_galili
FBgn0003483	spn-E	82	32.331	ENSNBRG00000008735	tdrd9	93	32.331	Neolamprologus_brichardi
FBgn0003483	spn-E	86	33.672	ENSNLEG00000016251	TDRD9	88	33.672	Nomascus_leucogenys
FBgn0003483	spn-E	82	34.531	ENSODEG00000002255	TDRD9	85	34.531	Octodon_degus
FBgn0003483	spn-E	82	32.702	ENSONIG00000020126	tdrd9	87	32.702	Oreochromis_niloticus
FBgn0003483	spn-E	82	33.992	ENSOCUG00000014788	TDRD9	88	33.992	Oryctolagus_cuniculus
FBgn0003483	spn-E	83	31.931	ENSORLG00020009475	tdrd9	94	31.931	Oryzias_latipes_hni
FBgn0003483	spn-E	85	32.016	ENSOMEG00000006369	tdrd9	88	32.514	Oryzias_melastigma
FBgn0003483	spn-E	87	33.258	ENSOGAG00000007626	TDRD9	89	33.182	Otolemur_garnettii
FBgn0003483	spn-E	86	33.543	ENSOARG00000006675	TDRD9	91	33.543	Ovis_aries
FBgn0003483	spn-E	86	33.934	ENSPPAG00000027180	TDRD9	93	33.934	Pan_paniscus
FBgn0003483	spn-E	86	33.699	ENSPPRG00000021286	TDRD9	89	33.621	Panthera_pardus
FBgn0003483	spn-E	76	36.364	ENSPTIG00000017411	TDRD9	81	36.254	Panthera_tigris_altaica
FBgn0003483	spn-E	86	33.828	ENSPTRG00000006765	TDRD9	89	33.828	Pan_troglodytes
FBgn0003483	spn-E	86	33.906	ENSPANG00000004811	TDRD9	89	33.906	Papio_anubis
FBgn0003483	spn-E	82	33.006	ENSPKIG00000017763	tdrd9	87	33.006	Paramormyrops_kingsleyae
FBgn0003483	spn-E	85	33.360	ENSPSIG00000010466	TDRD9	94	33.360	Pelodiscus_sinensis
FBgn0003483	spn-E	53	40.284	ENSPMGG00000010265	tdrd9	65	40.284	Periophthalmus_magnuspinnatus
FBgn0003483	spn-E	75	41.399	ENSPEMG00000012496	Tdrd9	88	33.621	Peromyscus_maniculatus_bairdii
FBgn0003483	spn-E	82	32.528	ENSPFOG00000002400	tdrd9	93	32.528	Poecilia_formosa
FBgn0003483	spn-E	76	32.028	ENSPLAG00000005202	tdrd9	93	32.028	Poecilia_latipinna
FBgn0003483	spn-E	76	31.851	ENSPMEG00000017922	tdrd9	93	31.673	Poecilia_mexicana
FBgn0003483	spn-E	63	36.581	ENSPREG00000015184	tdrd9	88	36.581	Poecilia_reticulata
FBgn0003483	spn-E	57	31.536	ENSPPYG00000006180	-	89	31.536	Pongo_abelii
FBgn0003483	spn-E	80	33.195	ENSPCOG00000015323	TDRD9	87	33.195	Propithecus_coquereli
FBgn0003483	spn-E	82	33.279	ENSPNYG00000022319	tdrd9	93	33.252	Pundamilia_nyererei
FBgn0003483	spn-E	82	32.896	ENSPNAG00000010714	tdrd9	92	32.781	Pygocentrus_nattereri
FBgn0003483	spn-E	75	41.254	ENSRNOG00000053631	Tdrd9	88	33.725	Rattus_norvegicus
FBgn0003483	spn-E	86	33.908	ENSRBIG00000040614	TDRD9	99	31.250	Rhinopithecus_bieti
FBgn0003483	spn-E	86	33.803	ENSRROG00000037241	TDRD9	89	33.803	Rhinopithecus_roxellana
FBgn0003483	spn-E	86	34.118	ENSSBOG00000027466	TDRD9	93	34.118	Saimiri_boliviensis_boliviensis
FBgn0003483	spn-E	74	32.058	ENSSHAG00000013742	TDRD9	92	32.058	Sarcophilus_harrisii
FBgn0003483	spn-E	82	33.143	ENSSFOG00015012742	tdrd9	85	35.333	Scleropages_formosus
FBgn0003483	spn-E	82	32.455	ENSSMAG00000001831	tdrd9	92	32.295	Scophthalmus_maximus
FBgn0003483	spn-E	82	32.090	ENSSDUG00000000483	tdrd9	92	32.090	Seriola_dumerili
FBgn0003483	spn-E	82	32.650	ENSSLDG00000011875	tdrd9	90	32.650	Seriola_lalandi_dorsalis
FBgn0003483	spn-E	82	33.033	ENSSPUG00000004504	TDRD9	94	33.033	Sphenodon_punctatus
FBgn0003483	spn-E	87	31.994	ENSSPAG00000012556	tdrd9	97	31.994	Stegastes_partitus
FBgn0003483	spn-E	76	40.280	ENSSSCG00000002552	TDRD9	88	32.789	Sus_scrofa
FBgn0003483	spn-E	77	32.578	ENSTGUG00000012887	-	93	32.381	Taeniopygia_guttata
FBgn0003483	spn-E	77	43.883	ENSTRUG00000009586	tdrd9	87	43.883	Takifugu_rubripes
FBgn0003483	spn-E	77	31.694	ENSTNIG00000017353	tdrd9	92	31.675	Tetraodon_nigroviridis
FBgn0003483	spn-E	57	30.153	ENSTTRG00000006405	TDRD9	89	30.153	Tursiops_truncatus
FBgn0003483	spn-E	86	33.386	ENSUAMG00000017361	TDRD9	99	31.156	Ursus_americanus
FBgn0003483	spn-E	86	33.386	ENSUMAG00000024822	TDRD9	99	31.156	Ursus_maritimus
FBgn0003483	spn-E	85	34.333	ENSVVUG00000002584	TDRD9	97	34.333	Vulpes_vulpes
FBgn0003483	spn-E	76	32.432	ENSXETG00000023069	tdrd9	93	32.607	Xenopus_tropicalis
FBgn0003483	spn-E	82	32.271	ENSXCOG00000009311	tdrd9	92	32.271	Xiphophorus_couchianus
FBgn0003483	spn-E	82	32.618	ENSXMAG00000018300	tdrd9	92	32.353	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000335	negative regulation of transposition, DNA-mediated	25239103.	IMP	Process
GO:0001556	oocyte maturation	12154120.	IMP	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003724	RNA helicase activity	10449356.	TAS	Function
GO:0004386	helicase activity	10908586.	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	16530043.	IDA	Component
GO:0005737	cytoplasm	16530043.	IDA	Component
GO:0005737	cytoplasm	10021357.	NAS	Component
GO:0006342	chromatin silencing	14752161.	IMP	Process
GO:0006403	RNA localization	9988212.	TAS	Process
GO:0007076	mitotic chromosome condensation	21185189.	IMP	Process
GO:0007294	germarium-derived oocyte fate determination	9362456.	IGI	Process
GO:0007315	pole plasm assembly	8970731.	NAS	Process
GO:0007317	regulation of pole plasm oskar mRNA localization	15035984.	IMP	Process
GO:0008186	RNA-dependent ATPase activity	9988212.	TAS	Function
GO:0008298	intracellular mRNA localization	9362456.	IMP	Process
GO:0008298	intracellular mRNA localization	9642168.	TAS	Process
GO:0009949	polarity specification of anterior/posterior axis	9362456.	IMP	Process
GO:0009951	polarity specification of dorsal/ventral axis	9362456.	IMP	Process
GO:0010529	negative regulation of transposition	21873635.	IBA	Process
GO:0010529	negative regulation of transposition	20062045.	IMP	Process
GO:0016246	RNA interference	15102435.15145345.	TAS	Process
GO:0030423	targeting of mRNA for destruction involved in RNA interference	12154120.	IMP	Process
GO:0030717	oocyte karyosome formation	9362456.	IMP	Process
GO:0030720	oocyte localization involved in germarium-derived egg chamber formation	9362456.	IMP	Process
GO:0034459	ATP-dependent 3'-5' RNA helicase activity	21873635.	IBA	Function
GO:0043186	P granule	20362446.26295961.	IDA	Component
GO:0045451	pole plasm oskar mRNA localization	12874138.	IMP	Process
GO:0045892	negative regulation of transcription, DNA-templated	25239103.	IMP	Process
GO:0046843	dorsal appendage formation	17199040.	IMP	Process
GO:0048477	oogenesis	9362456.	IGI	Process
GO:0048477	oogenesis	25239103.	IMP	Process
GO:0048477	oogenesis	9988212.10449356.	TAS	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	20953170.	IMP	Process