EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0003520 (Gene tree)
Gene ID: 37065
Gene Symbol: stau
Alias: -
Full Name: staufen
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 7884 bases
Position: chr2R:18117896-18125779
Accession: FBgn0003520
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0085963	dsrm	PF00035.26	9.6e-48	1	4
FBpp0085963	dsrm	PF00035.26	9.6e-48	2	4
FBpp0085963	dsrm	PF00035.26	9.6e-48	3	4
FBpp0085963	dsrm	PF00035.26	9.6e-48	4	4
FBpp0085962	dsrm	PF00035.26	2e-47	1	4
FBpp0085962	dsrm	PF00035.26	2e-47	2	4
FBpp0085962	dsrm	PF00035.26	2e-47	3	4
FBpp0085962	dsrm	PF00035.26	2e-47	4	4
FBpp0290829	dsrm	PF00035.26	2.3e-47	1	4
FBpp0290829	dsrm	PF00035.26	2.3e-47	2	4
FBpp0290829	dsrm	PF00035.26	2.3e-47	3	4
FBpp0290829	dsrm	PF00035.26	2.3e-47	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0086784	-	4910	-	FBpp0085963	914 (aa)	-	P25159-2
FBtr0301614	-	3509	-	FBpp0290829	1025 (aa)	-	E1JGK6
FBtr0086783	-	5240	-	FBpp0085962	1026 (aa)	-	P25159

Gene Model

Click here to download FBgn0003520's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003520's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	17403906.	IDA	Component
GO:0003723	RNA binding	29580384.	IDA	Function
GO:0003725	double-stranded RNA binding	10908586.	ISS	Function
GO:0003725	double-stranded RNA binding	10449356.	TAS	Function
GO:0003729	mRNA binding	27525480.	IDA	Function
GO:0003729	mRNA binding	12142000.	NAS	Function
GO:0003730	mRNA 3'-UTR binding	9267024.16835436.	IDA	Function
GO:0005515	protein binding	26423004.	IPI	Function
GO:0005737	cytoplasm	9888987.	IDA	Component
GO:0005875	microtubule associated complex	10908588.	ISS	Component
GO:0005938	cell cortex	9267024.	IDA	Component
GO:0006403	RNA localization	9267024.	IMP	Process
GO:0007017	microtubule-based process	10908588.	ISS	Process
GO:0007315	pole plasm assembly	2151612.	IMP	Process
GO:0007316	pole plasm RNA localization	2151612.	IMP	Process
GO:0007317	regulation of pole plasm oskar mRNA localization	16905128.	IGI	Process
GO:0007317	regulation of pole plasm oskar mRNA localization	10449356.	TAS	Process
GO:0007318	pole plasm protein localization	16905128.	IMP	Process
GO:0007318	pole plasm protein localization	8804312.	TAS	Process
GO:0007400	neuroblast fate determination	15018932.	TAS	Process
GO:0007616	long-term memory	12593811.	TAS	Process
GO:0008017	microtubule binding	10908588.	ISS	Function
GO:0008017	microtubule binding	12142000.	NAS	Function
GO:0008104	protein localization	11784091.	TAS	Process
GO:0008298	intracellular mRNA localization	29580384.	IMP	Process
GO:0008298	intracellular mRNA localization	11784091.12142000.	TAS	Process
GO:0008595	anterior/posterior axis specification, embryo	16905128.	IGI	Process
GO:0009925	basal plasma membrane	9637685.	IDA	Component
GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	17403906.	IMP	Process
GO:0016324	apical plasma membrane	9637685.	IDA	Component
GO:0035418	protein localization to synapse	24951879.	IMP	Process
GO:0043025	neuronal cell body	17178403.21267420.	IDA	Component
GO:0045167	asymmetric protein localization involved in cell fate determination	15018932.	TAS	Process
GO:0045177	apical part of cell	9888987.	IDA	Component
GO:0045179	apical cortex	9267024.	IDA	Component
GO:0045180	basal cortex	9888987.29580384.	IDA	Component
GO:0045180	basal cortex	12447381.	NAS	Component
GO:0045180	basal cortex	15018932.	TAS	Component
GO:0045450	bicoid mRNA localization	10449356.	NAS	Process
GO:0045450	bicoid mRNA localization	7681599.11700288.	TAS	Process
GO:0045451	pole plasm oskar mRNA localization	11131516.11700288.12441250.	TAS	Process
GO:0045887	positive regulation of synaptic growth at neuromuscular junction	24951879.	IMP	Process
GO:0046011	regulation of oskar mRNA translation	10449356.11131516.	TAS	Process
GO:0046012	positive regulation of oskar mRNA translation	12446149.12655640.	NAS	Process
GO:0048477	oogenesis	9988212.	TAS	Process
GO:0055059	asymmetric neuroblast division	9267024.	NAS	Process
GO:0060293	germ plasm	19948068.	IDA	Component
GO:0071212	subsynaptic reticulum	24951879.	IDA	Component
GO:0071598	neuronal ribonucleoprotein granule	17178403.21267420.	IDA	Component
GO:1990124	messenger ribonucleoprotein complex	17178403.	IDA	Component