EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0003607 (Gene tree)
Gene ID: 34119
Gene Symbol: Su(var)205
Alias: -
Full Name: Suppressor of variegation 205
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 1497
Position: chr2L: 8209626-8211122
Accession: FBgn0003607
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0079636	-	1109	-	FBpp0079252	206 (aa)	-	P05205
FBtr0079635	-	992	-	FBpp0079251	206 (aa)	-	P05205

Gene Model

Click here to download FBgn0003607's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003607's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0003607	Su(var)205	84	43.353	ENSMUSG00000018666	Cbx1	86	40.690	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000182	rDNA binding	16675949.	IDA	Function
GO:0000278	mitotic cell cycle	21966530.	IDA	Process
GO:0000723	telomere maintenance	15304225.	IMP	Process
GO:0000775	chromosome, centromeric region	12771122.	NAS	Component
GO:0000775	chromosome, centromeric region	14579245.	TAS	Component
GO:0000780	condensed nuclear chromosome, centromeric region	16675949.	IDA	Component
GO:0000781	chromosome, telomeric region	20057353.21093267.	IDA	Component
GO:0000791	euchromatin	19487560.	IDA	Component
GO:0000792	heterochromatin	16980400.	IDA	Component
GO:0000792	heterochromatin	12771122.	NAS	Component
GO:0000792	heterochromatin	14579245.	TAS	Component
GO:0000793	condensed chromosome	16980400.	IDA	Component
GO:0003682	chromatin binding	18020713.	IDA	Function
GO:0003682	chromatin binding	17318176.	IMP	Function
GO:0003696	satellite DNA binding	16675949.	IDA	Function
GO:0003723	RNA binding	24990964.	IDA	Function
GO:0003729	mRNA binding	12771122.	NAS	Function
GO:0005515	protein binding	9311988.12826664.24990964.	IPI	Function
GO:0005634	nucleus	9311988.16675949.29746464.	IDA	Component
GO:0005694	chromosome	19750210.	IDA	Component
GO:0005700	polytene chromosome	17318176.17909832.24990964.	IDA	Component
GO:0005701	polytene chromosome chromocenter	12723693.12756231.18981478.19487560.21703449.	IDA	Component
GO:0005701	polytene chromosome chromocenter	14579245.	TAS	Component
GO:0005703	polytene chromosome puff	12723693.12756231.	IDA	Component
GO:0005703	polytene chromosome puff	12771122.	TAS	Component
GO:0005704	polytene chromosome band	21703449.	IDA	Component
GO:0005720	nuclear heterochromatin	12376620.	IDA	Component
GO:0005721	pericentric heterochromatin	24990964.	IDA	Component
GO:0006342	chromatin silencing	11901117.	HMP	Process
GO:0006343	establishment of chromatin silencing	11179225.	IMP	Process
GO:0006355	regulation of transcription, DNA-templated	16258543.	IMP	Process
GO:0016458	gene silencing	19487560.	IDA	Process
GO:0016458	gene silencing	19487560.	IMP	Process
GO:0030702	chromatin silencing at centromere	11901117.	HMP	Process
GO:0031060	regulation of histone methylation	16258543.	IMP	Process
GO:0031507	heterochromatin assembly	19487560.	IDA	Process
GO:0033697	positive regulation of extent of heterochromatin assembly	19487560.	IMP	Process
GO:0034773	histone H4-K20 trimethylation	18296440.	IMP	Process
GO:0035012	polytene chromosome, telomeric region	12723693.12756231.19487560.	IDA	Component
GO:0035012	polytene chromosome, telomeric region	14579245.	TAS	Component
GO:0035064	methylated histone binding	14585615.	TAS	Function
GO:0042393	histone binding	12771122.	NAS	Function
GO:0042981	regulation of apoptotic process	16258543.	IMP	Process
GO:0045892	negative regulation of transcription, DNA-templated	12771122.	NAS	Process
GO:0045893	positive regulation of transcription, DNA-templated	12771122.	TAS	Process
GO:0051276	chromosome organization	17151257.	IMP	Process
GO:0090309	positive regulation of methylation-dependent chromatin silencing	26472911.	IMP	Process
GO:1900111	positive regulation of histone H3-K9 dimethylation	19487560.	IDA	Process
GO:1900111	positive regulation of histone H3-K9 dimethylation	19487560.	IMP	Process