EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0003714 (Gene tree)
Gene ID: 31228
Gene Symbol: tko
Alias: -
Full Name: technical knockout
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 1664 bases
Position: chrX:2442313-2443976
Accession: FBgn0003714
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0070443	Ribosom_S12_S23	PF00164.25	6.4e-24	1	1
FBpp0300988	Ribosom_S12_S23	PF00164.25	8.6e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0308831	-	1596	-	FBpp0300988	154 (aa)	-	D3DMP8
FBtr0070459	-	663	-	FBpp0070443	140 (aa)	-	P10735

Gene Model

Click here to download FBgn0003714's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003714's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0003714	tko	61	39.362	FBgn0033912	RpS23	66	39.362

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0003714	tko	81	63.478	ENSG00000128626	MRPS12	96	57.778	Homo_sapiens
FBgn0003714	tko	98	56.429	ENSAPOG00000005047	si:dkey-17e16.10	96	56.429	Acanthochromis_polyacanthus
FBgn0003714	tko	90	55.396	ENSAMEG00000008722	MRPS12	99	55.396	Ailuropoda_melanoleuca
FBgn0003714	tko	91	58.779	ENSACIG00000016095	si:dkey-17e16.10	100	53.425	Amphilophus_citrinellus
FBgn0003714	tko	79	65.789	ENSAOCG00000018530	si:dkey-17e16.10	78	65.789	Amphiprion_ocellaris
FBgn0003714	tko	79	66.071	ENSAPEG00000019785	si:dkey-17e16.10	78	66.071	Amphiprion_percula
FBgn0003714	tko	91	58.779	ENSATEG00000018924	si:dkey-17e16.10	90	58.779	Anabas_testudineus
FBgn0003714	tko	94	57.252	ENSAPLG00000011925	-	95	57.252	Anas_platyrhynchos
FBgn0003714	tko	79	60.000	ENSAPLG00000014350	-	73	60.000	Anas_platyrhynchos
FBgn0003714	tko	78	69.725	ENSACAG00000003829	MRPS12	76	69.725	Anolis_carolinensis
FBgn0003714	tko	81	63.478	ENSANAG00000033654	MRPS12	81	63.478	Aotus_nancymaae
FBgn0003714	tko	98	55.714	ENSACLG00000013979	si:dkey-17e16.10	93	56.164	Astatotilapia_calliptera
FBgn0003714	tko	84	61.983	ENSAMXG00000025945	si:dkey-17e16.10	81	61.983	Astyanax_mexicanus
FBgn0003714	tko	81	62.609	ENSBTAG00000001782	MRPS12	81	62.609	Bos_taurus
FBgn0003714	tko	78	47.967	WBGene00011391	mrps-12	73	47.967	Caenorhabditis_elegans
FBgn0003714	tko	81	63.478	ENSCJAG00000043176	MRPS12	81	63.478	Callithrix_jacchus
FBgn0003714	tko	96	57.037	ENSCAFG00000005623	MRPS12	93	57.037	Canis_familiaris
FBgn0003714	tko	96	57.037	ENSCAFG00020016784	MRPS12	93	57.037	Canis_lupus_dingo
FBgn0003714	tko	81	62.609	ENSCHIG00000013852	MRPS12	81	62.609	Capra_hircus
FBgn0003714	tko	81	64.035	ENSTSYG00000009568	MRPS12	82	64.035	Carlito_syrichta
FBgn0003714	tko	81	64.348	ENSCAPG00000009543	MRPS12	83	64.348	Cavia_aperea
FBgn0003714	tko	81	64.348	ENSCPOG00000035217	MRPS12	81	64.348	Cavia_porcellus
FBgn0003714	tko	81	62.609	ENSCCAG00000035388	MRPS12	82	62.609	Cebus_capucinus
FBgn0003714	tko	81	64.348	ENSCATG00000038438	MRPS12	81	64.348	Cercocebus_atys
FBgn0003714	tko	81	64.348	ENSCLAG00000013286	MRPS12	81	64.348	Chinchilla_lanigera
FBgn0003714	tko	81	65.217	ENSCSAG00000003929	MRPS12	95	59.259	Chlorocebus_sabaeus
FBgn0003714	tko	61	67.442	ENSCHOG00000008451	MRPS12	62	67.442	Choloepus_hoffmanni
FBgn0003714	tko	90	55.714	ENSCPBG00000018941	MRPS12	89	56.738	Chrysemys_picta_bellii
FBgn0003714	tko	84	50.000	ENSCING00000014236	-	61	50.000	Ciona_intestinalis
FBgn0003714	tko	81	63.478	ENSCANG00000003652	MRPS12	95	57.778	Colobus_angolensis_palliatus
FBgn0003714	tko	81	60.870	ENSCGRG00001018968	Mrps12	81	60.870	Cricetulus_griseus_chok1gshd
FBgn0003714	tko	81	60.870	ENSCGRG00000007113	Mrps12	81	60.870	Cricetulus_griseus_crigri
FBgn0003714	tko	92	56.835	ENSCSEG00000001174	si:dkey-17e16.10	95	56.835	Cynoglossus_semilaevis
FBgn0003714	tko	98	56.429	ENSCVAG00000003253	si:dkey-17e16.10	96	56.429	Cyprinodon_variegatus
FBgn0003714	tko	95	56.643	ENSDARG00000089836	MRPS12	98	56.643	Danio_rerio
FBgn0003714	tko	91	59.231	ENSDNOG00000003918	MRPS12	99	53.571	Dasypus_novemcinctus
FBgn0003714	tko	80	64.035	ENSDORG00000001544	Mrps12	81	64.035	Dipodomys_ordii
FBgn0003714	tko	81	61.739	ENSETEG00000017985	MRPS12	81	61.739	Echinops_telfairi
FBgn0003714	tko	90	59.441	ENSEBUG00000003529	si:dkey-17e16.10	78	59.441	Eptatretus_burgeri
FBgn0003714	tko	81	61.947	ENSEASG00005019736	MRPS12	81	61.947	Equus_asinus_asinus
FBgn0003714	tko	81	61.947	ENSECAG00000013794	MRPS12	81	61.947	Equus_caballus
FBgn0003714	tko	94	59.091	ENSELUG00000014973	si:dkey-17e16.10	94	58.273	Esox_lucius
FBgn0003714	tko	81	61.947	ENSFCAG00000014573	MRPS12	81	61.947	Felis_catus
FBgn0003714	tko	77	61.818	ENSFALG00000015276	MRPS12	94	61.818	Ficedula_albicollis
FBgn0003714	tko	81	63.478	ENSFDAG00000008482	MRPS12	99	53.793	Fukomys_damarensis
FBgn0003714	tko	81	63.793	ENSFHEG00000004575	si:dkey-17e16.10	80	63.793	Fundulus_heteroclitus
FBgn0003714	tko	78	65.179	ENSGMOG00000020611	si:dkey-17e16.10	98	65.179	Gadus_morhua
FBgn0003714	tko	78	62.385	ENSGALG00000038667	MRPS12	81	63.636	Gallus_gallus
FBgn0003714	tko	81	64.655	ENSGAFG00000007521	si:dkey-17e16.10	80	64.655	Gambusia_affinis
FBgn0003714	tko	79	63.248	ENSGACG00000003011	si:dkey-17e16.10	100	63.248	Gasterosteus_aculeatus
FBgn0003714	tko	83	63.793	ENSGAGG00000009748	MRPS12	79	62.903	Gopherus_agassizii
FBgn0003714	tko	81	63.478	ENSGGOG00000002500	MRPS12	96	57.778	Gorilla_gorilla
FBgn0003714	tko	81	63.793	ENSHBUG00000014480	si:dkey-17e16.10	99	56.552	Haplochromis_burtoni
FBgn0003714	tko	82	60.000	ENSHGLG00000014942	MRPS12	82	60.000	Heterocephalus_glaber_female
FBgn0003714	tko	82	60.000	ENSHGLG00100017710	MRPS12	82	60.000	Heterocephalus_glaber_male
FBgn0003714	tko	99	53.846	ENSHCOG00000010444	si:dkey-17e16.10	97	53.846	Hippocampus_comes
FBgn0003714	tko	87	61.240	ENSIPUG00000024651	MRPS12	89	60.769	Ictalurus_punctatus
FBgn0003714	tko	90	57.447	ENSSTOG00000009006	MRPS12	96	57.447	Ictidomys_tridecemlineatus
FBgn0003714	tko	81	64.348	ENSJJAG00000017837	Mrps12	81	64.348	Jaculus_jaculus
FBgn0003714	tko	98	55.714	ENSKMAG00000007949	si:dkey-17e16.10	97	51.572	Kryptolebias_marmoratus
FBgn0003714	tko	81	63.025	ENSLBEG00000001112	si:dkey-17e16.10	94	59.124	Labrus_bergylta
FBgn0003714	tko	85	63.025	ENSLACG00000018393	MRPS12	74	63.025	Latimeria_chalumnae
FBgn0003714	tko	81	68.696	ENSLOCG00000000535	si:dkey-17e16.10	79	68.696	Lepisosteus_oculatus
FBgn0003714	tko	81	61.062	ENSLAFG00000022140	MRPS12	81	63.478	Loxodonta_africana
FBgn0003714	tko	81	63.478	ENSMFAG00000044563	MRPS12	95	57.778	Macaca_fascicularis
FBgn0003714	tko	81	64.348	ENSMNEG00000040379	MRPS12	95	58.519	Macaca_nemestrina
FBgn0003714	tko	81	64.348	ENSMLEG00000036963	MRPS12	81	64.348	Mandrillus_leucophaeus
FBgn0003714	tko	81	64.912	ENSMAMG00000017962	si:dkey-17e16.10	81	64.912	Mastacembelus_armatus
FBgn0003714	tko	98	55.714	ENSMZEG00005017336	si:dkey-17e16.10	99	56.164	Maylandia_zebra
FBgn0003714	tko	94	53.435	ENSMGAG00000005414	MRPS12	92	54.545	Meleagris_gallopavo
FBgn0003714	tko	68	54.639	ENSMAUG00000019146	Mrps12	92	54.639	Mesocricetus_auratus
FBgn0003714	tko	93	54.615	ENSMICG00000045111	MRPS12	94	54.615	Microcebus_murinus
FBgn0003714	tko	93	58.333	ENSMOCG00000012666	Mrps12	94	58.333	Microtus_ochrogaster
FBgn0003714	tko	91	59.690	ENSMMOG00000010803	si:dkey-17e16.10	85	59.690	Mola_mola
FBgn0003714	tko	96	55.147	ENSMODG00000013431	MRPS12	93	55.147	Monodelphis_domestica
FBgn0003714	tko	81	61.062	ENSMALG00000004190	si:dkey-17e16.10	96	54.286	Monopterus_albus
FBgn0003714	tko	94	57.895	MGP_CAROLIEiJ_G0029457	Mrps12	96	56.738	Mus_caroli
FBgn0003714	tko	94	57.895	ENSMUSG00000045948	Mrps12	96	56.738	Mus_musculus
FBgn0003714	tko	94	57.895	MGP_PahariEiJ_G0012691	Mrps12	96	56.738	Mus_pahari
FBgn0003714	tko	94	57.895	MGP_SPRETEiJ_G0030553	Mrps12	96	56.738	Mus_spretus
FBgn0003714	tko	88	58.537	ENSMPUG00000017750	MRPS12	92	58.537	Mustela_putorius_furo
FBgn0003714	tko	81	63.717	ENSMLUG00000006076	MRPS12	81	63.717	Myotis_lucifugus
FBgn0003714	tko	81	62.609	ENSNGAG00000022099	Mrps12	99	54.483	Nannospalax_galili
FBgn0003714	tko	98	55.714	ENSNBRG00000007244	si:dkey-17e16.10	99	56.164	Neolamprologus_brichardi
FBgn0003714	tko	78	57.143	ENSMEUG00000005688	MRPS12	97	57.143	Notamacropus_eugenii
FBgn0003714	tko	93	58.333	ENSODEG00000016161	MRPS12	99	54.483	Octodon_degus
FBgn0003714	tko	81	63.793	ENSONIG00000002022	si:dkey-17e16.10	99	56.164	Oreochromis_niloticus
FBgn0003714	tko	81	66.087	ENSOCUG00000000689	MRPS12	82	66.087	Oryctolagus_cuniculus
FBgn0003714	tko	98	57.857	ENSORLG00000007040	si:dkey-17e16.10	99	54.930	Oryzias_latipes
FBgn0003714	tko	98	57.857	ENSORLG00020011268	MRPS12	99	54.930	Oryzias_latipes_hni
FBgn0003714	tko	98	57.857	ENSORLG00015009378	MRPS12	99	54.930	Oryzias_latipes_hsok
FBgn0003714	tko	98	57.857	ENSOMEG00000001427	si:dkey-17e16.10	99	54.930	Oryzias_melastigma
FBgn0003714	tko	81	56.522	ENSOGAG00000025634	-	81	56.522	Otolemur_garnettii
FBgn0003714	tko	90	54.286	ENSOGAG00000008295	-	99	54.286	Otolemur_garnettii
FBgn0003714	tko	81	62.609	ENSOARG00000005927	MRPS12	81	62.609	Ovis_aries
FBgn0003714	tko	81	63.478	ENSPPAG00000041637	MRPS12	96	57.778	Pan_paniscus
FBgn0003714	tko	81	61.947	ENSPPRG00000011742	MRPS12	81	61.947	Panthera_pardus
FBgn0003714	tko	61	67.442	ENSPTIG00000008427	MRPS12	86	60.000	Panthera_tigris_altaica
FBgn0003714	tko	81	63.478	ENSPTRG00000010948	MRPS12	96	57.778	Pan_troglodytes
FBgn0003714	tko	81	64.348	ENSPANG00000021673	MRPS12	95	58.519	Papio_anubis
FBgn0003714	tko	81	66.667	ENSPKIG00000006716	si:dkey-17e16.10	98	56.552	Paramormyrops_kingsleyae
FBgn0003714	tko	82	64.348	ENSPSIG00000014383	MRPS12	91	57.447	Pelodiscus_sinensis
FBgn0003714	tko	80	65.789	ENSPMGG00000009631	si:dkey-17e16.10	79	65.789	Periophthalmus_magnuspinnatus
FBgn0003714	tko	93	58.779	ENSPEMG00000016700	Mrps12	94	58.779	Peromyscus_maniculatus_bairdii
FBgn0003714	tko	97	56.338	ENSPMAG00000008051	si:dkey-17e16.10	91	56.338	Petromyzon_marinus
FBgn0003714	tko	78	64.545	ENSPCIG00000010531	-	77	64.545	Phascolarctos_cinereus
FBgn0003714	tko	81	62.931	ENSPFOG00000018863	si:dkey-17e16.10	79	62.931	Poecilia_formosa
FBgn0003714	tko	81	62.931	ENSPLAG00000008933	si:dkey-17e16.10	79	62.931	Poecilia_latipinna
FBgn0003714	tko	81	62.931	ENSPMEG00000005155	si:dkey-17e16.10	75	62.931	Poecilia_mexicana
FBgn0003714	tko	81	62.931	ENSPREG00000014123	si:dkey-17e16.10	76	62.931	Poecilia_reticulata
FBgn0003714	tko	81	62.609	ENSPPYG00000009950	MRPS12	96	57.037	Pongo_abelii
FBgn0003714	tko	93	59.091	ENSPCAG00000010853	MRPS12	94	59.091	Procavia_capensis
FBgn0003714	tko	81	62.609	ENSPCOG00000020370	MRPS12	81	62.609	Propithecus_coquereli
FBgn0003714	tko	81	62.832	ENSPVAG00000011605	MRPS12	81	62.832	Pteropus_vampyrus
FBgn0003714	tko	98	55.714	ENSPNYG00000015506	si:dkey-17e16.10	93	56.164	Pundamilia_nyererei
FBgn0003714	tko	82	63.559	ENSPNAG00000016315	si:dkey-17e16.10	91	57.143	Pygocentrus_nattereri
FBgn0003714	tko	93	57.576	ENSRNOG00000019949	Mrps12	94	57.576	Rattus_norvegicus
FBgn0003714	tko	81	63.478	ENSRBIG00000029741	MRPS12	95	57.778	Rhinopithecus_bieti
FBgn0003714	tko	81	63.478	ENSRROG00000030787	MRPS12	95	57.778	Rhinopithecus_roxellana
FBgn0003714	tko	81	63.478	ENSSBOG00000025707	MRPS12	81	63.478	Saimiri_boliviensis_boliviensis
FBgn0003714	tko	81	64.602	ENSSFOG00015018102	mrps12	97	54.676	Scleropages_formosus
FBgn0003714	tko	81	62.185	ENSSMAG00000004249	si:dkey-17e16.10	79	62.185	Scophthalmus_maximus
FBgn0003714	tko	79	62.281	ENSSDUG00000020424	si:dkey-17e16.10	77	62.281	Seriola_dumerili
FBgn0003714	tko	79	62.281	ENSSLDG00000016320	si:dkey-17e16.10	77	62.281	Seriola_lalandi_dorsalis
FBgn0003714	tko	81	64.035	ENSSARG00000006985	MRPS12	81	64.035	Sorex_araneus
FBgn0003714	tko	99	58.865	ENSSPUG00000004675	MRPS12	100	51.613	Sphenodon_punctatus
FBgn0003714	tko	81	63.866	ENSSPAG00000012951	si:dkey-17e16.10	79	63.866	Stegastes_partitus
FBgn0003714	tko	81	62.609	ENSSSCG00000031860	MRPS12	89	62.609	Sus_scrofa
FBgn0003714	tko	78	63.063	ENSTGUG00000016491	MRPS12	99	63.063	Taeniopygia_guttata
FBgn0003714	tko	88	60.432	ENSTRUG00000017342	si:dkey-17e16.10	96	60.432	Takifugu_rubripes
FBgn0003714	tko	79	66.667	ENSTNIG00000004898	si:dkey-17e16.10	81	66.667	Tetraodon_nigroviridis
FBgn0003714	tko	93	56.923	ENSTBEG00000001288	MRPS12	94	56.923	Tupaia_belangeri
FBgn0003714	tko	81	64.348	ENSTTRG00000011794	MRPS12	81	64.348	Tursiops_truncatus
FBgn0003714	tko	93	54.615	ENSUAMG00000011626	MRPS12	99	52.899	Ursus_americanus
FBgn0003714	tko	93	55.385	ENSUMAG00000019235	MRPS12	99	53.623	Ursus_maritimus
FBgn0003714	tko	96	57.037	ENSVVUG00000006433	MRPS12	65	57.037	Vulpes_vulpes
FBgn0003714	tko	92	58.915	ENSXETG00000005326	mrps12	87	58.915	Xenopus_tropicalis
FBgn0003714	tko	81	64.655	ENSXCOG00000020766	si:dkey-17e16.10	76	64.655	Xiphophorus_couchianus
FBgn0003714	tko	81	64.655	ENSXMAG00000027119	si:dkey-17e16.10	80	64.655	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001666	response to hypoxia	20034480.	IDA	Process
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	11279123.11402041.	ISS	Function
GO:0003735	structural constituent of ribosome	17927810.	TAS	Function
GO:0005763	mitochondrial small ribosomal subunit	11279123.11402041.	ISS	Component
GO:0005763	mitochondrial small ribosomal subunit	17927810.	TAS	Component
GO:0006412	translation	21873635.	IBA	Process
GO:0006412	translation	11279123.	ISS	Process
GO:0007605	sensory perception of sound	11560901.	IMP	Process
GO:0007619	courtship behavior	12486700.	TAS	Process
GO:0007638	mechanosensory behavior	7932299.11560901.	IMP	Process
GO:0008049	male courtship behavior	11560901.	IMP	Process
GO:0009612	response to mechanical stimulus	7932299.	IMP	Process
GO:0032543	mitochondrial translation	11402041.	ISS	Process
GO:0032543	mitochondrial translation	17927810.	TAS	Process