EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0003721 (Gene tree)
Gene ID: 41852
Gene Symbol: Tm1
Alias: -
Full Name: Tropomyosin 1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 27409
Position: chr3R: 15281371-15308779
Accession: FBgn0003721
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0089965	-	2531	-	FBpp0088904	711 (aa)	-	Q8IGY1
FBtr0089964	-	2485	-	FBpp0088903	285 (aa)	-	P06754
FBtr0089967	-	1248	-	FBpp0088906	285 (aa)	-	P06754-1
FBtr0089962	-	2651	-	FBpp0088901	441 (aa)	-	Q95TA3
FBtr0089960	-	2003	-	FBpp0088899	252 (aa)	-	P06754-2
FBtr0089963	-	3054	-	FBpp0088902	678 (aa)	-	Q8IG84
FBtr0089957	-	1665	-	FBpp0088896	518 (aa)	-	P49455
FBtr0305656	-	1318	-	FBpp0296936	250 (aa)	-	A0A0B4K661
FBtr0089959	-	1684	-	FBpp0088898	501 (aa)	-	H1UUP7
FBtr0305654	-	1503	-	FBpp0296934	285 (aa)	-	Q6LEH1
FBtr0305655	-	752	-	FBpp0296935	161 (aa)	-	A0A0B4K6Y8
FBtr0089968	-	2194	-	FBpp0089024	284 (aa)	-	P06754-5
FBtr0301960	-	1253	-	FBpp0291172	285 (aa)	-	Q6NN28
FBtr0333918	-	1253	-	FBpp0306046	285 (aa)	-	A0A0B4KG06
FBtr0089961	-	2501	-	FBpp0088900	441 (aa)	-	Q95TA3
FBtr0333917	-	1861	-	FBpp0306045	250 (aa)	-	A0A0B4KG68
FBtr0301959	-	1253	-	FBpp0291171	285 (aa)	-	P06754-1

Gene Model

Click here to download FBgn0003721's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003721's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0003721	Tm1	99	69.395	WBGene00002978	lev-11	98	79.605	Caenorhabditis_elegans
FBgn0003721	Tm1	98	56.835	ENSMUSG00000027940	Tpm3	99	67.143	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001725	stress fiber	27396338.	IMP	Component
GO:0003779	actin binding	10908588.	ISS	Function
GO:0003779	actin binding	11700288.	TAS	Function
GO:0005829	cytosol	25294944.	HDA	Component
GO:0005884	actin filament	21873635.	IBA	Component
GO:0006936	muscle contraction	12446149.	NAS	Process
GO:0007015	actin filament organization	21873635.	IBA	Process
GO:0007315	pole plasm assembly	8970731.	NAS	Process
GO:0010591	regulation of lamellipodium assembly	17331727.	IMP	Process
GO:0016529	sarcoplasmic reticulum	21126519.	IDA	Component
GO:0019894	kinesin binding	27802167.	IPI	Function
GO:0019901	protein kinase binding	26251439.	IPI	Function
GO:0030017	sarcomere	18199432.	IDA	Component
GO:0030864	cortical actin cytoskeleton	27396338.	IMP	Component
GO:0043149	stress fiber assembly	27396338.	IMP	Process
GO:0043186	P granule	27802167.	IDA	Component
GO:0045451	pole plasm oskar mRNA localization	7566149.27802167.	IMP	Process
GO:0045451	pole plasm oskar mRNA localization	11700288.12446149.	TAS	Process
GO:0048477	oogenesis	9988212.	TAS	Process
GO:0048813	dendrite morphogenesis	12867499.	IMP	Process
GO:0048813	dendrite morphogenesis	15018941.	TAS	Process
GO:0051015	actin filament binding	21873635.	IBA	Function
GO:0051015	actin filament binding	21406550.	IDA	Function
GO:0055093	response to hyperoxia	20668515.	IMP	Process
GO:0070865	investment cone	21126519.	IDA	Component