EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0003742 (Gene tree)
Gene ID: 36619
Gene Symbol: tra2
Alias: -
Full Name: transformer 2
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 2334 bases
Position: chr2R:14602004-14604337
Accession: FBgn0003742
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0088561	RRM_1	PF00076.22	1.8e-20	1	1
FBpp0088560	RRM_1	PF00076.22	2.9e-20	1	1
FBpp0088564	RRM_1	PF00076.22	2.9e-20	1	1
FBpp0088562	RRM_1	PF00076.22	3.6e-20	1	1
FBpp0088946	RRM_1	PF00076.22	3.6e-20	1	1
FBpp0088947	RRM_1	PF00076.22	3.6e-20	1	1
FBpp0088563	RRM_1	PF00076.22	5.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0089621	-	1391	-	FBpp0088946	264 (aa)	-	P19018
FBtr0089619	-	1568	-	FBpp0088564	226 (aa)	-	P19018-2
FBtr0089620	-	1381	-	FBpp0088947	264 (aa)	-	P19018
FBtr0089618	-	1405	-	FBpp0088563	136 (aa)	-	P19018-4
FBtr0089617	-	1376	-	FBpp0088562	264 (aa)	-	P19018
FBtr0089616	-	1460	-	FBpp0088561	179 (aa)	-	P19018-3
FBtr0089615	-	1228	-	FBpp0088560	226 (aa)	-	P19018-2

Gene Model

Click here to download FBgn0003742's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003742's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0003742	tra2	94	48.851	ENSCING00000018620	-	50	49.342	Ciona_intestinalis
FBgn0003742	tra2	79	36.842	ENSEBUG00000001450	-	62	36.842	Eptatretus_burgeri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000003	reproduction	2120049.	IMP	Process
GO:0000003	reproduction	8124712.	NAS	Process
GO:0000245	spliceosomal complex assembly	10648226.	NAS	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	8124712.	IDA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	19218244.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	1518835.8334698.	IDA	Process
GO:0000398	mRNA splicing, via spliceosome	8124712.	NAS	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	3144434.8124712.	NAS	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005515	protein binding	8124712.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005681	spliceosomal complex	21873635.	IBA	Component
GO:0006397	mRNA processing	2493992.	IMP	Process
GO:0006397	mRNA processing	1674449.	NAS	Process
GO:0007283	spermatogenesis	8970731.	NAS	Process
GO:0007530	sex determination	3144434.11092827.12486700.	NAS	Process
GO:0019101	female somatic sex determination	8970731.	TAS	Process
GO:0019102	male somatic sex determination	8970731.	TAS	Process
GO:0030237	female sex determination	2116360.2120049.	IMP	Process
GO:0036002	pre-mRNA binding	1518835.8124712.	IDA	Function
GO:0042802	identical protein binding	8124712.	IPI	Function
GO:0048026	positive regulation of mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component