EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0003891 (Gene tree)
Gene ID: 37417
Gene Symbol: tud
Alias: -
Full Name: tudor
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 9592 bases
Position: chr2R:21183322-21192913
Accession: FBgn0003891
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0309672	TUDOR	PF00567.24	1e-229	1	9
FBpp0309672	TUDOR	PF00567.24	1e-229	2	9
FBpp0309672	TUDOR	PF00567.24	1e-229	3	9
FBpp0309672	TUDOR	PF00567.24	1e-229	4	9
FBpp0309672	TUDOR	PF00567.24	1e-229	5	9
FBpp0309672	TUDOR	PF00567.24	1e-229	6	9
FBpp0309672	TUDOR	PF00567.24	1e-229	7	9
FBpp0309672	TUDOR	PF00567.24	1e-229	8	9
FBpp0309672	TUDOR	PF00567.24	1e-229	9	9
FBpp0071508	TUDOR	PF00567.24	1e-229	1	9
FBpp0071508	TUDOR	PF00567.24	1e-229	2	9
FBpp0071508	TUDOR	PF00567.24	1e-229	3	9
FBpp0071508	TUDOR	PF00567.24	1e-229	4	9
FBpp0071508	TUDOR	PF00567.24	1e-229	5	9
FBpp0071508	TUDOR	PF00567.24	1e-229	6	9
FBpp0071508	TUDOR	PF00567.24	1e-229	7	9
FBpp0071508	TUDOR	PF00567.24	1e-229	8	9
FBpp0071508	TUDOR	PF00567.24	1e-229	9	9
FBpp0309672	SMN	PF06003.12	1.8e-11	1	2
FBpp0309672	SMN	PF06003.12	1.8e-11	2	2
FBpp0071508	SMN	PF06003.12	2.4e-11	1	2
FBpp0071508	SMN	PF06003.12	2.4e-11	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0071582	-	8830	-	FBpp0071508	2515 (aa)	-	P25823
FBtr0342870	-	8821	-	FBpp0309672	2512 (aa)	-	A0A0B4LG05

Gene Model

Click here to download FBgn0003891's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003891's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	8275857.	IDA	Component
GO:0005737	cytoplasm	20659974.30260314.	IDA	Component
GO:0005739	mitochondrion	8275857.	IDA	Component
GO:0005739	mitochondrion	8970731.	TAS	Component
GO:0007277	pole cell development	15495201.	IMP	Process
GO:0007281	germ cell development	16971472.	IMP	Process
GO:0007281	germ cell development	11131516.	TAS	Process
GO:0007315	pole plasm assembly	2151612.	IMP	Process
GO:0007315	pole plasm assembly	8804312.8970731.11131516.	TAS	Process
GO:0008298	intracellular mRNA localization	9988212.	TAS	Process
GO:0030719	P granule organization	15495201.	IMP	Process
GO:0043186	P granule	8275857.16971472.20659974.26295961.	IDA	Component
GO:0043186	P granule	8804312.8970731.11131516.	TAS	Component
GO:0045495	pole plasm	20659974.	IDA	Component