EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0003942 (Gene tree)
Gene ID: 34420
Gene Symbol: RpS27A
Alias: -
Full Name: Ribosomal protein S27A
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 2105 bases
Position: chr2L:10408352-10410456
Accession: FBgn0003942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0079606	Ribosomal_S27	PF01599.19	2.3e-26	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0080016	-	592	-	FBpp0079606	156 (aa)	-	P15357

Gene Model

Click here to download FBgn0003942's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003942's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0003942	RpS27A	100	91.667	ENSAPOG00000022780	rps27a	100	91.667	Acanthochromis_polyacanthus
FBgn0003942	RpS27A	100	91.667	ENSAOCG00000000282	rps27a	100	91.667	Amphiprion_ocellaris
FBgn0003942	RpS27A	100	91.667	ENSAPEG00000010300	rps27a	100	91.667	Amphiprion_percula
FBgn0003942	RpS27A	100	91.026	ENSATEG00000021507	rps27a	100	91.026	Anabas_testudineus
FBgn0003942	RpS27A	100	91.667	ENSAMXG00000040689	rps27a	100	91.667	Astyanax_mexicanus
FBgn0003942	RpS27A	76	96.610	ENSCJAG00000046243	-	100	96.610	Callithrix_jacchus
FBgn0003942	RpS27A	100	91.667	ENSTSYG00000000845	-	100	91.667	Carlito_syrichta
FBgn0003942	RpS27A	100	87.179	ENSCING00000005834	r27a	99	88.312	Ciona_intestinalis
FBgn0003942	RpS27A	99	80.519	ENSCSAVG00000001323	-	95	80.519	Ciona_savignyi
FBgn0003942	RpS27A	100	73.077	ENSCGRG00001008358	-	100	71.154	Cricetulus_griseus_chok1gshd
FBgn0003942	RpS27A	100	91.667	ENSCSEG00000001603	rps27a	100	91.667	Cynoglossus_semilaevis
FBgn0003942	RpS27A	100	91.667	ENSCVAG00000004811	rps27a	86	91.667	Cyprinodon_variegatus
FBgn0003942	RpS27A	100	91.667	ENSDARG00000032725	rps27a	100	91.667	Danio_rerio
FBgn0003942	RpS27A	100	89.103	ENSEBUG00000007396	rps27a	100	89.103	Eptatretus_burgeri
FBgn0003942	RpS27A	100	91.667	ENSELUG00000004527	rps27a	100	91.667	Esox_lucius
FBgn0003942	RpS27A	100	91.667	ENSFHEG00000001180	rps27a	100	91.667	Fundulus_heteroclitus
FBgn0003942	RpS27A	100	91.667	ENSGMOG00000011896	rps27a	91	91.667	Gadus_morhua
FBgn0003942	RpS27A	100	91.667	ENSGAFG00000014202	rps27a	100	91.667	Gambusia_affinis
FBgn0003942	RpS27A	100	91.667	ENSGACG00000011558	rps27a	100	91.667	Gasterosteus_aculeatus
FBgn0003942	RpS27A	100	91.667	ENSHBUG00000003375	rps27a	100	91.667	Haplochromis_burtoni
FBgn0003942	RpS27A	100	91.667	ENSHCOG00000019712	rps27a	100	91.667	Hippocampus_comes
FBgn0003942	RpS27A	100	91.667	ENSIPUG00000015317	rps27a	100	91.667	Ictalurus_punctatus
FBgn0003942	RpS27A	100	91.667	ENSKMAG00000003156	rps27a	100	91.667	Kryptolebias_marmoratus
FBgn0003942	RpS27A	100	91.667	ENSLBEG00000000541	rps27a	100	91.667	Labrus_bergylta
FBgn0003942	RpS27A	100	92.949	ENSLACG00000007672	rps27a	100	92.949	Latimeria_chalumnae
FBgn0003942	RpS27A	100	91.667	ENSLOCG00000015551	rps27a	96	91.667	Lepisosteus_oculatus
FBgn0003942	RpS27A	100	89.744	ENSMNEG00000026442	-	100	89.744	Macaca_nemestrina
FBgn0003942	RpS27A	88	93.478	ENSMLEG00000003375	-	100	93.478	Mandrillus_leucophaeus
FBgn0003942	RpS27A	100	91.667	ENSMAMG00000022556	rps27a	100	91.667	Mastacembelus_armatus
FBgn0003942	RpS27A	100	91.667	ENSMZEG00005004484	rps27a	100	91.667	Maylandia_zebra
FBgn0003942	RpS27A	100	91.026	ENSMMOG00000007733	rps27a	100	91.026	Mola_mola
FBgn0003942	RpS27A	100	91.667	ENSMALG00000014759	rps27a	100	91.667	Monopterus_albus
FBgn0003942	RpS27A	100	91.667	ENSNBRG00000010708	rps27a	100	91.667	Neolamprologus_brichardi
FBgn0003942	RpS27A	100	91.667	ENSONIG00000016075	rps27a	96	91.667	Oreochromis_niloticus
FBgn0003942	RpS27A	100	91.667	ENSORLG00000029546	rps27a	100	91.667	Oryzias_latipes
FBgn0003942	RpS27A	100	79.444	ENSORLG00020017665	-	100	79.444	Oryzias_latipes_hni
FBgn0003942	RpS27A	100	91.667	ENSORLG00015003772	rps27a	100	91.667	Oryzias_latipes_hsok
FBgn0003942	RpS27A	100	91.667	ENSOMEG00000022866	rps27a	100	91.667	Oryzias_melastigma
FBgn0003942	RpS27A	92	84.028	ENSOGAG00000029795	-	92	83.333	Otolemur_garnettii
FBgn0003942	RpS27A	100	88.462	ENSOARG00000014935	-	91	87.179	Ovis_aries
FBgn0003942	RpS27A	100	90.385	ENSPPAG00000023609	-	100	90.385	Pan_paniscus
FBgn0003942	RpS27A	100	91.667	ENSPTRG00000023227	-	100	91.667	Pan_troglodytes
FBgn0003942	RpS27A	100	92.308	ENSPKIG00000021492	rps27a	100	92.308	Paramormyrops_kingsleyae
FBgn0003942	RpS27A	78	88.525	ENSPMAG00000006335	-	100	88.525	Petromyzon_marinus
FBgn0003942	RpS27A	100	91.667	ENSPFOG00000013152	rps27a	100	91.667	Poecilia_formosa
FBgn0003942	RpS27A	100	91.667	ENSPLAG00000012639	rps27a	100	91.667	Poecilia_latipinna
FBgn0003942	RpS27A	100	91.667	ENSPMEG00000015419	rps27a	100	91.667	Poecilia_mexicana
FBgn0003942	RpS27A	100	91.667	ENSPREG00000012478	rps27a	100	91.667	Poecilia_reticulata
FBgn0003942	RpS27A	94	93.197	ENSPVAG00000016471	-	97	93.197	Pteropus_vampyrus
FBgn0003942	RpS27A	100	91.667	ENSPNYG00000019989	rps27a	100	91.667	Pundamilia_nyererei
FBgn0003942	RpS27A	100	91.667	ENSPNAG00000002903	rps27a	100	91.667	Pygocentrus_nattereri
FBgn0003942	RpS27A	95	83.108	YLR167W	RPS31	97	83.108	Saccharomyces_cerevisiae
FBgn0003942	RpS27A	99	90.968	ENSSFOG00015017733	rps27a	88	90.968	Scleropages_formosus
FBgn0003942	RpS27A	100	91.667	ENSSMAG00000004941	rps27a	100	91.667	Scophthalmus_maximus
FBgn0003942	RpS27A	100	91.667	ENSSDUG00000003170	rps27a	100	91.667	Seriola_dumerili
FBgn0003942	RpS27A	99	81.290	ENSSLDG00000001310	-	100	81.290	Seriola_lalandi_dorsalis
FBgn0003942	RpS27A	100	91.667	ENSSPAG00000022744	rps27a	100	91.667	Stegastes_partitus
FBgn0003942	RpS27A	100	91.667	ENSTRUG00000010963	rps27a	100	91.667	Takifugu_rubripes
FBgn0003942	RpS27A	90	89.286	ENSTNIG00000018689	rps27a	100	89.286	Tetraodon_nigroviridis
FBgn0003942	RpS27A	100	91.667	ENSXCOG00000003780	rps27a	100	91.667	Xiphophorus_couchianus
FBgn0003942	RpS27A	100	91.667	ENSXMAG00000000171	rps27a	100	91.667	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002181	cytoplasmic translation	17927810.	TAS	Process
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0003735	structural constituent of ribosome	17927810.	TAS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006412	translation	-	IEA	Process
GO:0016567	protein ubiquitination	21873635.	IBA	Process
GO:0016567	protein ubiquitination	-	ISS	Process
GO:0019941	modification-dependent protein catabolic process	21873635.	IBA	Process
GO:0022627	cytosolic small ribosomal subunit	21873635.	IBA	Component
GO:0022627	cytosolic small ribosomal subunit	17927810.	TAS	Component
GO:0031386	protein tag	21873635.	IBA	Function
GO:0031386	protein tag	-	ISS	Function
GO:0031625	ubiquitin protein ligase binding	21873635.	IBA	Function