EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0003963 (Gene tree)
Gene ID: 33225
Gene Symbol: ush
Alias: -
Full Name: u-shaped
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 64341 bases
Position: chr2L:476220-540560
Accession: FBgn0003963
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0305227	zf-met	PF12874.7	7.7e-07	1	2
FBpp0305227	zf-met	PF12874.7	7.7e-07	2	2
FBpp0077723	zf-met	PF12874.7	8.5e-07	1	2
FBpp0077723	zf-met	PF12874.7	8.5e-07	2	2
FBpp0301730	zf-met	PF12874.7	8.9e-07	1	2
FBpp0301730	zf-met	PF12874.7	8.9e-07	2	2
FBpp0305228	zf-met	PF12874.7	8.9e-07	1	2
FBpp0305228	zf-met	PF12874.7	8.9e-07	2	2
FBpp0302929	zf-met	PF12874.7	9.6e-07	1	2
FBpp0302929	zf-met	PF12874.7	9.6e-07	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0078063	-	4752	-	FBpp0077723	1191 (aa)	-	Q9VPQ6
FBtr0333013	-	6084	-	FBpp0305228	1198 (aa)	-	C1C573
FBtr0333012	-	4242	-	FBpp0305227	1175 (aa)	-	M9PDU3
FBtr0310027	-	4654	-	FBpp0301730	1198 (aa)	-	M9PC12
FBtr0329895	-	4482	-	FBpp0302929	1212 (aa)	-	Q9VPQ6

Gene Model

Click here to download FBgn0003963's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0003963's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	9367989.	IDA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	20709169.	IMP	Process
GO:0001085	RNA polymerase II transcription factor binding	21873635.	IBA	Function
GO:0001102	RNA polymerase II activating transcription factor binding	9367990.	IPI	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005515	protein binding	12374748.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	9367989.	IDA	Component
GO:0006355	regulation of transcription, DNA-templated	9367989.	IDA	Process
GO:0006355	regulation of transcription, DNA-templated	12231351.	NAS	Process
GO:0006963	positive regulation of antibacterial peptide biosynthetic process	20421637.	IMP	Process
GO:0007390	germ-band shortening	8625823.8946251.	IMP	Process
GO:0007390	germ-band shortening	10491260.12147138.	TAS	Process
GO:0007391	dorsal closure	12147138.	TAS	Process
GO:0007393	dorsal closure, leading edge cell fate determination	11532914.	NAS	Process
GO:0007398	ectoderm development	14642751.	TAS	Process
GO:0007507	heart development	21873635.	IBA	Process
GO:0007507	heart development	11404479.	IMP	Process
GO:0007507	heart development	12027431.	TAS	Process
GO:0008134	transcription factor binding	9367989.	IMP	Function
GO:0008134	transcription factor binding	12732186.	TAS	Function
GO:0008258	head involution	8625823.	NAS	Process
GO:0009996	negative regulation of cell fate specification	14602069.	TAS	Process
GO:0022416	chaeta development	18992810.	IGI	Process
GO:0030097	hemopoiesis	11798069.	TAS	Process
GO:0035167	larval lymph gland hemopoiesis	17936744.19737914.	IMP	Process
GO:0035169	lymph gland plasmatocyte differentiation	23603494.	IMP	Process
GO:0035170	lymph gland crystal cell differentiation	23603494.	IMP	Process
GO:0042440	pigment metabolic process	12119094.	TAS	Process
GO:0042690	negative regulation of crystal cell differentiation	12732186.14602069.	TAS	Process
GO:0043433	negative regulation of DNA-binding transcription factor activity	9367990.	IDA	Process
GO:0045611	negative regulation of hemocyte differentiation	27163255.	IMP	Process
GO:0046665	amnioserosa maintenance	8625823.	IMP	Process
GO:0046665	amnioserosa maintenance	11532914.14642751.	TAS	Process
GO:0048542	lymph gland development	16730345.	IMP	Process
GO:0048749	compound eye development	11404479.	IMP	Process