EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0082316	RRM_1	PF00076.22	3.6e-33	1	2
FBpp0082316	RRM_1	PF00076.22	3.6e-33	2	2
FBpp0289817	RRM_1	PF00076.22	3.6e-33	1	2
FBpp0289817	RRM_1	PF00076.22	3.6e-33	2	2
FBpp0302741	RRM_1	PF00076.22	3.6e-33	1	2
FBpp0302741	RRM_1	PF00076.22	3.6e-33	2	2
FBpp0306562	RRM_1	PF00076.22	3.6e-33	1	2
FBpp0306562	RRM_1	PF00076.22	3.6e-33	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0334495	-	2759	-	FBpp0306562	385 (aa)	-	P48810
FBtr0310621	-	1587	-	FBpp0302741	385 (aa)	-	P48810
FBtr0300590	-	1810	-	FBpp0289817	385 (aa)	-	P48810
FBtr0082851	-	2281	-	FBpp0082316	385 (aa)	-	P48810

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0004237	Hrb87F	59	35.683	FBgn0263396	sqd	52	38.824
FBgn0004237	Hrb87F	50	39.267	FBgn0260943	Rbp6	56	41.463

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0004237	Hrb87F	59	42.731	ENSMAMG00000017728	-	67	46.023	Mastacembelus_armatus
FBgn0004237	Hrb87F	59	33.772	ENSMEUG00000003051	-	57	34.270	Notamacropus_eugenii
FBgn0004237	Hrb87F	84	36.503	ENSORLG00000023542	-	61	43.678	Oryzias_latipes
FBgn0004237	Hrb87F	84	37.695	ENSORLG00000023176	-	58	44.186	Oryzias_latipes
FBgn0004237	Hrb87F	54	38.835	ENSORLG00000030284	-	72	37.405	Oryzias_latipes
FBgn0004237	Hrb87F	70	42.045	ENSORLG00020007084	-	80	42.045	Oryzias_latipes_hni
FBgn0004237	Hrb87F	56	40.000	ENSOMEG00000006903	-	67	43.103	Oryzias_melastigma
FBgn0004237	Hrb87F	76	43.678	ENSOMEG00000002509	-	85	45.402	Oryzias_melastigma
FBgn0004237	Hrb87F	74	43.716	ENSOMEG00000023475	-	64	44.253	Oryzias_melastigma
FBgn0004237	Hrb87F	70	33.684	ENSOMEG00000006327	-	62	35.632	Oryzias_melastigma
FBgn0004237	Hrb87F	50	43.902	ENSOMEG00000002084	-	70	43.902	Oryzias_melastigma
FBgn0004237	Hrb87F	76	41.441	ENSOMEG00000021030	-	65	43.931	Oryzias_melastigma
FBgn0004237	Hrb87F	50	45.402	ENSOMEG00000002000	-	59	45.402	Oryzias_melastigma
FBgn0004237	Hrb87F	54	42.718	ENSPREG00000010603	-	58	47.159	Poecilia_reticulata

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000278	mitotic cell cycle	18463163.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	19196985.	IMP	Process
GO:0000785	chromatin	10984439.	IDA	Component
GO:0000792	heterochromatin	27514026.	IDA	Component
GO:0001745	compound eye morphogenesis	17698010.	IGI	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15492211.	IC	Component
GO:0005634	nucleus	10984439.	IDA	Component
GO:0005654	nucleoplasm	1730753.	IDA	Component
GO:0005703	polytene chromosome puff	1730753.16598038.	IDA	Component
GO:0008585	female gonad development	22922191.	IMP	Process
GO:0009408	response to heat	22922191.	IMP	Process
GO:0035062	omega speckle	10984439.	IDA	Component
GO:0042594	response to starvation	22922191.	IMP	Process
GO:0043565	sequence-specific DNA binding	19196985.	IDA	Function
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	1730753.	IDA	Component
GO:1990904	ribonucleoprotein complex	1730753.	IPI	Component
GO:1990904	ribonucleoprotein complex	1730753.	ISS	Component