EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Gene Ontology
Description
Ensembl ID
FBgn0004401 (Gene tree)
Gene ID
45961
Gene Symbol
Pep
Alias
-
Full Name
Protein on ecdysone puffs
Gene Type
protein_coding
Species
Drosophila_melanogaster
Status
confidence
Strand
Minus strand
Length
6934 bases
Position
chr3L:17638103-17645036
Accession
FBgn0004401
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
FBpp0089253zf-metPF12874.76.7e-0611
FBpp0293516zf-metPF12874.76.7e-0611
FBpp0074963zf-metPF12874.77.6e-0611
FBpp0089253zf-C2H2_jazPF12171.81.7e-0911
FBpp0293516zf-C2H2_jazPF12171.81.7e-0911
FBpp0074963zf-C2H2_jazPF12171.81.9e-0911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27378189Global changes of the RNA bound proteome during the maternal-to-zygotic transition in DrosophilaIC & embryos.MZT2016 Jul 5Sysoev VODOI: 10.1038/ncomms12128
27197210The mRNA-bound proteome of the early fly embryoIC & embryos2016 Apr 28Wessels HHDOI: 10.1101/gr.200386.115
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
FBtr0075198-2446-FBpp0074962109 (aa)-P41073-2
FBtr0075200-2691-FBpp0089253693 (aa)-M9NG39
FBtr0075199-2792-FBpp0074963716 (aa)-P41073
FBtr0304977-2626-FBpp0293516693 (aa)-M9NG39
Gene Model
Click here to download FBgn0004401's gene model file
Protein-Protein Interaction (PPI)

Clik here to download FBgn0004401's network
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome18981222.ICProcess
GO:0003677DNA binding9722628.IDAFunction
GO:0003697single-stranded DNA binding8355684.IDAFunction
GO:0003727single-stranded RNA binding9722628.IDAFunction
GO:0005703polytene chromosome puff8355684.IDAComponent
GO:0048024regulation of mRNA splicing, via spliceosome15937219.IMPProcess
GO:0071011precatalytic spliceosome18981222.HDAComponent
GO:0071013catalytic step 2 spliceosome18981222.HDAComponent

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