EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0004587 (Gene tree)
Gene ID: 41670
Gene Symbol: B52
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 5581 bases
Position: chr3R:13661311-13666891
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0082270	RRM_1	PF00076.22	6.9e-33	1	2
FBpp0082270	RRM_1	PF00076.22	6.9e-33	2	2
FBpp0082269	RRM_1	PF00076.22	8.4e-33	1	2
FBpp0082269	RRM_1	PF00076.22	8.4e-33	2	2
FBpp0082274	RRM_1	PF00076.22	8.4e-33	1	2
FBpp0082274	RRM_1	PF00076.22	8.4e-33	2	2
FBpp0300516	RRM_1	PF00076.22	8.4e-33	1	2
FBpp0300516	RRM_1	PF00076.22	8.4e-33	2	2
FBpp0300515	RRM_1	PF00076.22	8.7e-33	1	2
FBpp0300515	RRM_1	PF00076.22	8.7e-33	2	2
FBpp0300517	RRM_1	PF00076.22	8.7e-33	1	2
FBpp0300517	RRM_1	PF00076.22	8.7e-33	2	2
FBpp0082271	RRM_1	PF00076.22	2.2e-19	1	1
FBpp0289813	RRM_1	PF00076.22	2.2e-19	1	1
FBpp0082272	RRM_1	PF00076.22	1.1e-18	1	1
FBpp0289815	RRM_1	PF00076.22	1.1e-18	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0300588	-	3966	-	FBpp0289815	147 (aa)	-	P26686-6
FBtr0308197	-	1580	-	FBpp0300517	355 (aa)	-	A0A0C4DHG5
FBtr0308196	-	1725	-	FBpp0300516	350 (aa)	-	A0A0C4DHG5
FBtr0300586	-	3563	-	FBpp0289813	135 (aa)	-	P26686-4
FBtr0082806	-	1557	-	FBpp0082274	350 (aa)	-	P26686
FBtr0082804	-	3958	-	FBpp0082272	147 (aa)	-	P26686-6
FBtr0082803	-	3045	-	FBpp0082271	135 (aa)	-	P26686-4
FBtr0082802	-	1643	-	FBpp0082270	329 (aa)	-	P26686-3
FBtr0082801	-	1565	-	FBpp0082269	350 (aa)	-	P26686-2
FBtr0308195	-	1590	-	FBpp0300515	355 (aa)	-	A0A0C4DHG5

Gene Model

Click here to download FBgn0004587's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0004587's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0004587	B52	51	38.889	FBgn0260944	Rbp1	59	37.975
FBgn0004587	B52	95	37.121	FBgn0283477	SF2	66	41.243

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0004587	B52	96	64.122	ENSAPOG00000023399	-	59	68.132	Acanthochromis_polyacanthus
FBgn0004587	B52	95	60.938	ENSACIG00000018649	srsf4	89	62.016	Amphilophus_citrinellus
FBgn0004587	B52	95	59.375	ENSAOCG00000005997	srsf4	90	62.500	Amphiprion_ocellaris
FBgn0004587	B52	52	68.571	ENSAPEG00000020870	-	57	67.568	Amphiprion_percula
FBgn0004587	B52	97	55.725	ENSATEG00000005680	srsf4	61	61.290	Anabas_testudineus
FBgn0004587	B52	95	63.281	ENSACLG00000003395	srsf4	67	65.574	Astatotilapia_calliptera
FBgn0004587	B52	96	62.308	ENSACLG00000021269	-	69	53.333	Astatotilapia_calliptera
FBgn0004587	B52	95	58.462	ENSAMXG00000034811	srsf4	73	64.865	Astyanax_mexicanus
FBgn0004587	B52	96	45.161	WBGene00004698	rsp-1	97	47.222	Caenorhabditis_elegans
FBgn0004587	B52	96	62.308	ENSCHIG00000022096	SRSF4	51	56.371	Capra_hircus
FBgn0004587	B52	95	51.145	ENSCING00000011362	-	65	56.452	Ciona_intestinalis
FBgn0004587	B52	97	50.331	ENSCING00000024718	-	57	62.051	Ciona_intestinalis
FBgn0004587	B52	97	51.034	ENSCING00000012370	-	68	60.500	Ciona_intestinalis
FBgn0004587	B52	97	55.396	ENSCING00000020631	-	80	59.278	Ciona_intestinalis
FBgn0004587	B52	99	55.224	ENSCSAVG00000002581	-	70	62.366	Ciona_savignyi
FBgn0004587	B52	95	61.719	ENSCSEG00000010058	srsf4	75	61.240	Cynoglossus_semilaevis
FBgn0004587	B52	95	59.690	ENSDARG00000105293	srsf4	70	66.216	Danio_rerio
FBgn0004587	B52	94	51.515	ENSEBUG00000001681	srsf4	66	53.846	Eptatretus_burgeri
FBgn0004587	B52	81	53.211	ENSEBUG00000003129	srsf4	68	51.136	Eptatretus_burgeri
FBgn0004587	B52	95	56.250	ENSELUG00000017551	srsf4	92	58.462	Esox_lucius
FBgn0004587	B52	96	62.308	ENSFALG00000001346	SRSF4	52	58.462	Ficedula_albicollis
FBgn0004587	B52	97	58.779	ENSFHEG00000007472	srsf4	80	67.568	Fundulus_heteroclitus
FBgn0004587	B52	95	54.478	ENSGMOG00000012906	srsf4	55	61.749	Gadus_morhua
FBgn0004587	B52	97	61.194	ENSGAFG00000018496	srsf4	64	58.470	Gambusia_affinis
FBgn0004587	B52	95	59.375	ENSGACG00000002389	srsf4	54	64.481	Gasterosteus_aculeatus
FBgn0004587	B52	96	62.308	ENSHBUG00000011326	-	50	64.835	Haplochromis_burtoni
FBgn0004587	B52	55	68.919	ENSHBUG00000016897	-	67	68.919	Haplochromis_burtoni
FBgn0004587	B52	95	59.542	ENSHCOG00000012540	srsf4	66	63.388	Hippocampus_comes
FBgn0004587	B52	95	60.938	ENSKMAG00000013631	srsf4	80	54.976	Kryptolebias_marmoratus
FBgn0004587	B52	53	69.014	ENSLBEG00000017163	-	69	67.568	Labrus_bergylta
FBgn0004587	B52	96	62.308	ENSLAFG00000002575	SRSF4	54	54.098	Loxodonta_africana
FBgn0004587	B52	97	62.121	ENSMAMG00000004888	srsf4	67	62.295	Mastacembelus_armatus
FBgn0004587	B52	95	63.281	ENSMZEG00005026275	srsf4	67	65.574	Maylandia_zebra
FBgn0004587	B52	55	68.919	ENSMZEG00005025078	-	67	68.919	Maylandia_zebra
FBgn0004587	B52	95	59.375	ENSMMOG00000013653	srsf4	64	61.749	Mola_mola
FBgn0004587	B52	96	62.308	ENSMODG00000011052	SRSF4	71	59.016	Monodelphis_domestica
FBgn0004587	B52	95	62.016	ENSMALG00000013392	srsf4	65	65.027	Monopterus_albus
FBgn0004587	B52	56	67.105	ENSMALG00000010062	-	82	67.105	Monopterus_albus
FBgn0004587	B52	96	62.308	ENSNGAG00000012225	Srsf4	53	57.519	Nannospalax_galili
FBgn0004587	B52	79	57.547	ENSNBRG00000014840	-	96	58.491	Neolamprologus_brichardi
FBgn0004587	B52	96	52.308	ENSNLEG00000030787	-	61	57.065	Nomascus_leucogenys
FBgn0004587	B52	52	68.571	ENSORLG00000028783	-	67	67.568	Oryzias_latipes
FBgn0004587	B52	95	58.594	ENSORLG00020016052	srsf4	74	60.287	Oryzias_latipes_hni
FBgn0004587	B52	95	58.594	ENSORLG00015007566	srsf4	60	55.794	Oryzias_latipes_hsok
FBgn0004587	B52	95	61.538	ENSPMGG00000013436	srsf4	94	61.240	Periophthalmus_magnuspinnatus
FBgn0004587	B52	95	54.688	ENSPMAG00000009397	srsf4	67	56.284	Petromyzon_marinus
FBgn0004587	B52	97	60.150	ENSPLAG00000008812	srsf4	63	59.563	Poecilia_latipinna
FBgn0004587	B52	97	57.778	ENSPMEG00000023638	srsf4	55	61.856	Poecilia_mexicana
FBgn0004587	B52	95	62.500	ENSPNYG00000003796	srsf4	55	66.120	Pundamilia_nyererei
FBgn0004587	B52	95	59.375	ENSPNAG00000023844	srsf4	52	62.295	Pygocentrus_nattereri
FBgn0004587	B52	71	62.500	ENSSHAG00000012407	SRSF4	64	54.271	Sarcophilus_harrisii
FBgn0004587	B52	96	58.779	ENSSFOG00015020292	srsf4	85	53.077	Scleropages_formosus
FBgn0004587	B52	95	57.031	ENSSDUG00000007387	srsf4	70	51.020	Seriola_dumerili
FBgn0004587	B52	95	46.094	ENSSLDG00000009745	srsf4	60	54.645	Seriola_lalandi_dorsalis
FBgn0004587	B52	56	64.474	ENSSPUG00000019124	-	85	64.474	Sphenodon_punctatus
FBgn0004587	B52	95	60.938	ENSSPAG00000014538	srsf4	92	54.545	Stegastes_partitus
FBgn0004587	B52	95	59.375	ENSTRUG00000011891	srsf4	61	61.702	Takifugu_rubripes
FBgn0004587	B52	96	57.576	ENSXCOG00000003212	-	54	65.217	Xiphophorus_couchianus
FBgn0004587	B52	97	58.015	ENSXCOG00000018826	srsf4	90	57.258	Xiphophorus_couchianus
FBgn0004587	B52	55	67.568	ENSXMAG00000021549	-	62	67.568	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000278	mitotic cell cycle	18463163.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	25414008.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10594020.	IDA	Process
GO:0000398	mRNA splicing, via spliceosome	16611989.	IMP	Process
GO:0001178	regulation of transcriptional start site selection at RNA polymerase II promoter	25414008.	IMP	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	25414008.	IDA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15492211.	IC	Component
GO:0005634	nucleus	12134081.	IDA	Component
GO:0005700	polytene chromosome	20862310.	IDA	Component
GO:0008380	RNA splicing	27725692.	IMP	Process
GO:0010468	regulation of gene expression	25414008.	IMP	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0016607	nuclear speck	10984439.	IDA	Component
GO:0031440	regulation of mRNA 3'-end processing	25414008.	IMP	Process
GO:0035062	omega speckle	10984439.	IDA	Component
GO:0035327	transcriptionally active chromatin	1885003.	IDA	Component
GO:0044819	mitotic G1/S transition checkpoint	16611989.	IMP	Process
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0048024	regulation of mRNA splicing, via spliceosome	15937219.	IMP	Process
GO:0051607	defense response to virus	25197089.	IMP	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component