EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0004838 (Gene tree)
Gene ID: 33968
Gene Symbol: Hrb27C
Alias: -
Full Name: Heterogeneous nuclear ribonucleoprotein at 27C
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 11354 bases
Position: chr2L:6920704-6932057
Accession: FBgn0004838
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0078974	RRM_1	PF00076.22	1.9e-34	1	2
FBpp0078974	RRM_1	PF00076.22	1.9e-34	2	2
FBpp0078975	RRM_1	PF00076.22	1.9e-34	1	2
FBpp0078975	RRM_1	PF00076.22	1.9e-34	2	2
FBpp0078976	RRM_1	PF00076.22	1.9e-34	1	2
FBpp0078976	RRM_1	PF00076.22	1.9e-34	2	2
FBpp0290617	RRM_1	PF00076.22	1.9e-34	1	2
FBpp0290617	RRM_1	PF00076.22	1.9e-34	2	2
FBpp0290618	RRM_1	PF00076.22	1.9e-34	1	2
FBpp0290618	RRM_1	PF00076.22	1.9e-34	2	2
FBpp0297873	RRM_1	PF00076.22	1.9e-34	1	2
FBpp0297873	RRM_1	PF00076.22	1.9e-34	2	2
FBpp0297874	RRM_1	PF00076.22	1.9e-34	1	2
FBpp0297874	RRM_1	PF00076.22	1.9e-34	2	2
FBpp0297875	RRM_1	PF00076.22	1.9e-34	1	2
FBpp0297875	RRM_1	PF00076.22	1.9e-34	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0079346	-	2993	-	FBpp0078974	421 (aa)	-	P48809
FBtr0301403	-	2137	-	FBpp0290617	421 (aa)	-	P48809
FBtr0079347	-	2256	-	FBpp0078975	421 (aa)	-	P48809
FBtr0301404	-	2110	-	FBpp0290618	421 (aa)	-	P48809
FBtr0079348	-	5830	-	FBpp0078976	421 (aa)	-	P48809
FBtr0307030	-	4789	-	FBpp0297873	421 (aa)	-	P48809
FBtr0307031	-	2943	-	FBpp0297874	421 (aa)	-	P48809
FBtr0307032	-	8240	-	FBpp0297875	421 (aa)	-	P48809

Gene Model

Click here to download FBgn0004838's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0004838's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0004838	Hrb27C	52	31.579	FBgn0025790	TBPH	62	31.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0004838	Hrb27C	55	44.664	ENSAPOG00000021971	dazap1	63	45.455	Acanthochromis_polyacanthus
FBgn0004838	Hrb27C	55	44.130	ENSACIG00000004322	dazap1	61	44.939	Amphilophus_citrinellus
FBgn0004838	Hrb27C	55	44.664	ENSAOCG00000020107	dazap1	63	45.455	Amphiprion_ocellaris
FBgn0004838	Hrb27C	55	44.664	ENSAPEG00000005289	dazap1	63	45.455	Amphiprion_percula
FBgn0004838	Hrb27C	55	45.238	ENSATEG00000016043	dazap1	63	46.032	Anabas_testudineus
FBgn0004838	Hrb27C	55	44.664	ENSACLG00000023187	dazap1	81	38.889	Astatotilapia_calliptera
FBgn0004838	Hrb27C	55	45.669	ENSAMXG00000019066	dazap1	61	45.669	Astyanax_mexicanus
FBgn0004838	Hrb27C	52	48.276	ENSCGRG00001021763	Cirbp	55	46.835	Cricetulus_griseus_chok1gshd
FBgn0004838	Hrb27C	51	48.035	ENSCGRG00000017446	Dazap1	54	48.035	Cricetulus_griseus_crigri
FBgn0004838	Hrb27C	52	46.696	ENSCSEG00000018162	dazap1	50	47.577	Cynoglossus_semilaevis
FBgn0004838	Hrb27C	75	40.533	ENSDARG00000070846	dazap1	95	52.027	Danio_rerio
FBgn0004838	Hrb27C	55	45.749	ENSELUG00000010286	dazap1	71	45.749	Esox_lucius
FBgn0004838	Hrb27C	55	44.269	ENSFHEG00000016786	dazap1	69	44.269	Fundulus_heteroclitus
FBgn0004838	Hrb27C	55	44.664	ENSHBUG00000014707	dazap1	81	41.667	Haplochromis_burtoni
FBgn0004838	Hrb27C	55	44.578	ENSHCOG00000008541	dazap1	62	44.578	Hippocampus_comes
FBgn0004838	Hrb27C	55	44.664	ENSKMAG00000005673	dazap1	75	39.623	Kryptolebias_marmoratus
FBgn0004838	Hrb27C	55	44.664	ENSLBEG00000000569	dazap1	63	45.455	Labrus_bergylta
FBgn0004838	Hrb27C	55	44.269	ENSMAMG00000005746	dazap1	63	45.059	Mastacembelus_armatus
FBgn0004838	Hrb27C	55	44.664	ENSMZEG00005016739	dazap1	81	37.847	Maylandia_zebra
FBgn0004838	Hrb27C	52	48.498	ENSMAUG00000012188	Dazap1	99	51.176	Mesocricetus_auratus
FBgn0004838	Hrb27C	52	48.498	ENSMOCG00000016931	Dazap1	99	51.176	Microtus_ochrogaster
FBgn0004838	Hrb27C	72	38.462	ENSMMOG00000007638	dazap1	54	44.048	Mola_mola
FBgn0004838	Hrb27C	52	47.639	ENSMODG00000005157	DAZAP1	50	52.688	Monodelphis_domestica
FBgn0004838	Hrb27C	52	48.707	MGP_CAROLIEiJ_G0015574	Dazap1	99	51.176	Mus_caroli
FBgn0004838	Hrb27C	52	48.707	ENSMUSG00000069565	Dazap1	99	51.176	Mus_musculus
FBgn0004838	Hrb27C	52	48.707	MGP_PahariEiJ_G0030987	Dazap1	99	51.176	Mus_pahari
FBgn0004838	Hrb27C	52	48.707	MGP_SPRETEiJ_G0016392	Dazap1	99	51.176	Mus_spretus
FBgn0004838	Hrb27C	55	45.161	ENSNBRG00000004605	dazap1	81	42.509	Neolamprologus_brichardi
FBgn0004838	Hrb27C	92	34.009	ENSONIG00000012689	dazap1	58	45.098	Oreochromis_niloticus
FBgn0004838	Hrb27C	55	44.269	ENSORLG00000008278	dazap1	63	44.269	Oryzias_latipes
FBgn0004838	Hrb27C	55	44.269	ENSORLG00020015195	dazap1	67	44.269	Oryzias_latipes_hni
FBgn0004838	Hrb27C	55	44.269	ENSORLG00015010671	dazap1	67	44.269	Oryzias_latipes_hsok
FBgn0004838	Hrb27C	55	44.664	ENSOMEG00000003120	dazap1	66	44.664	Oryzias_melastigma
FBgn0004838	Hrb27C	55	42.259	ENSPMGG00000020522	dazap1	63	43.096	Periophthalmus_magnuspinnatus
FBgn0004838	Hrb27C	52	47.639	ENSPCIG00000011156	DAZAP1	50	52.688	Phascolarctos_cinereus
FBgn0004838	Hrb27C	60	41.667	ENSPNYG00000017318	dazap1	81	41.667	Pundamilia_nyererei
FBgn0004838	Hrb27C	55	44.664	ENSSMAG00000021047	dazap1	82	38.832	Scophthalmus_maximus
FBgn0004838	Hrb27C	55	44.664	ENSSDUG00000008609	dazap1	63	45.455	Seriola_dumerili
FBgn0004838	Hrb27C	55	44.664	ENSSLDG00000025339	dazap1	63	45.455	Seriola_lalandi_dorsalis
FBgn0004838	Hrb27C	60	41.667	ENSSPAG00000002402	dazap1	81	41.812	Stegastes_partitus
FBgn0004838	Hrb27C	90	36.364	ENSTRUG00000002467	dazap1	63	45.455	Takifugu_rubripes
FBgn0004838	Hrb27C	90	36.609	ENSTNIG00000010201	dazap1	63	44.882	Tetraodon_nigroviridis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003697	single-stranded DNA binding	1730753.	IDA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0003730	mRNA 3'-UTR binding	17890223.	IDA	Function
GO:0003730	mRNA 3'-UTR binding	11700288.	TAS	Function
GO:0005515	protein binding	19013444.	IPI	Function
GO:0005634	nucleus	24292889.	HDA	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	1730753.	IDA	Component
GO:0005730	nucleolus	1730753.	IDA	Component
GO:0005737	cytoplasm	24292889.	HDA	Component
GO:0005737	cytoplasm	7867926.	IDA	Component
GO:0007283	spermatogenesis	21873635.	IBA	Process
GO:0007319	negative regulation of oskar mRNA translation	11700288.	TAS	Process
GO:0007411	axon guidance	18516287.	IMP	Process
GO:0008266	poly(U) RNA binding	21873635.	IBA	Function
GO:0032991	protein-containing complex	19013444.	IPI	Component
GO:0034046	poly(G) binding	21873635.	IBA	Function
GO:0043186	P granule	18590813.	IPI	Component
GO:0045451	pole plasm oskar mRNA localization	15130488.	IMP	Process
GO:0045727	positive regulation of translation	17890223.	IDA	Process
GO:0048024	regulation of mRNA splicing, via spliceosome	15937219.	IMP	Process
GO:0048026	positive regulation of mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0048027	mRNA 5'-UTR binding	11131516.	NAS	Function
GO:0048027	mRNA 5'-UTR binding	11700288.	TAS	Function
GO:1903688	positive regulation of border follicle cell migration	17483425.	IMP	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	1730753.17890223.	IDA	Component
GO:1990904	ribonucleoprotein complex	1730753.	IPI	Component
GO:1990904	ribonucleoprotein complex	1730753.	ISS	Component