EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0004882 (Gene tree)
Gene ID: 42752
Gene Symbol: orb
Alias: -
Full Name: oo18 RNA-binding protein
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 20247 bases
Position: chr3R:23260610-23280856
Accession: FBgn0004882
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0083778	RRM_1	PF00076.22	1.5e-08	1	1
FBpp0099607	RRM_1	PF00076.22	1.5e-08	1	1
FBpp0290706	RRM_1	PF00076.22	1.6e-08	1	1
FBpp0083777	RRM_1	PF00076.22	4.1e-08	1	1
FBpp0099606	RRM_1	PF00076.22	4.1e-08	1	1
FBpp0083776	RRM_1	PF00076.22	4.5e-08	1	1
FBpp0306565	RRM_1	PF00076.22	4.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0334498	-	8899	-	FBpp0306565	915 (aa)	-	D4G7D4
FBtr0100228	-	1964	-	FBpp0099607	559 (aa)	-	Q8IHE0
FBtr0084386	-	2957	-	FBpp0083778	559 (aa)	-	Q8IMZ2
FBtr0100227	-	3258	-	FBpp0099606	913 (aa)	-	C7LAC0
FBtr0084384	-	4862	-	FBpp0083776	915 (aa)	-	Q9VCN7
FBtr0084385	-	4251	-	FBpp0083777	913 (aa)	-	Q8IMZ3
FBtr0301491	-	3079	-	FBpp0290706	617 (aa)	-	Q8IHC3

Gene Model

Click here to download FBgn0004882's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0004882's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0004882	orb	50	59.011	ENSAMXG00000014189	cpeb1a	51	59.011	Astyanax_mexicanus
FBgn0004882	orb	50	60.211	ENSCVAG00000004909	cpeb1b	57	60.211	Cyprinodon_variegatus
FBgn0004882	orb	50	60.211	ENSKMAG00000001929	cpeb1b	50	60.211	Kryptolebias_marmoratus
FBgn0004882	orb	50	59.441	ENSPNAG00000004246	cpeb1a	51	59.364	Pygocentrus_nattereri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000578	embryonic axis specification	11700288.	TAS	Process
GO:0000900	translation repressor activity, mRNA regulatory element binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003729	mRNA binding	11700288.	TAS	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0005515	protein binding	12538512.18434412.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	10101171.	IDA	Component
GO:0006378	mRNA polyadenylation	12538512.	IMP	Process
GO:0007281	germ cell development	11809824.	IMP	Process
GO:0007281	germ cell development	11809824.	TAS	Process
GO:0007294	germarium-derived oocyte fate determination	11700288.11809824.	TAS	Process
GO:0007309	oocyte axis specification	11700288.	TAS	Process
GO:0007310	oocyte dorsal/ventral axis specification	7926753.15737929.	IMP	Process
GO:0007314	oocyte anterior/posterior axis specification	7926753.	IMP	Process
GO:0007315	pole plasm assembly	8970731.	NAS	Process
GO:0008069	dorsal/ventral axis specification, ovarian follicular epithelium	24069162.	IGI	Process
GO:0008069	dorsal/ventral axis specification, ovarian follicular epithelium	24069162.	IMP	Process
GO:0008135	translation factor activity, RNA binding	21873635.	IBA	Function
GO:0008298	intracellular mRNA localization	9642168.11700288.	TAS	Process
GO:0043005	neuron projection	21873635.	IBA	Component
GO:0043022	ribosome binding	21873635.	IBA	Function
GO:0045202	synapse	21873635.	IBA	Component
GO:0045451	pole plasm oskar mRNA localization	7926753.12874138.	IMP	Process
GO:0045451	pole plasm oskar mRNA localization	11131516.	NAS	Process
GO:0045451	pole plasm oskar mRNA localization	9988212.11700288.	TAS	Process
GO:0045727	positive regulation of translation	9642168.	TAS	Process
GO:0046011	regulation of oskar mRNA translation	12538512.	IMP	Process
GO:0046011	regulation of oskar mRNA translation	11131516.	TAS	Process
GO:0046012	positive regulation of oskar mRNA translation	12655640.	NAS	Process
GO:0048477	oogenesis	11131516.	TAS	Process
GO:1990124	messenger ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	24069162.	IPI	Component
GO:2000766	negative regulation of cytoplasmic translation	21873635.	IBA	Process