EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0004888 (Gene tree)
Gene ID: 38447
Gene Symbol: Scsalpha
Alias: -
Full Name: Succinyl coenzyme A synthetase alpha subunit
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 4173
Position: chr3L: 3814211-3818383
Accession: FBgn0004888
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0303096	-	1250	-	FBpp0292215	328 (aa)	-	Q94522
FBtr0073151	-	1479	-	FBpp0073010	328 (aa)	-	Q94522

Gene Model

Click here to download FBgn0004888's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0004888's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0004888	Scsalpha	90	74.150	WBGene00007350	sucl-1	91	74.150	Caenorhabditis_elegans
FBgn0004888	Scsalpha	95	70.740	ENSMUSG00000052738	Suclg1	90	70.740	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004550	nucleoside diphosphate kinase activity	21873635.	IBA	Function
GO:0004775	succinate-CoA ligase (ADP-forming) activity	21873635.	IBA	Function
GO:0004776	succinate-CoA ligase (GDP-forming) activity	-	ISS	Function
GO:0004778	succinyl-CoA hydrolase activity	28017724.	IMP	Function
GO:0005739	mitochondrion	19317464.	HDA	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006099	tricarboxylic acid cycle	21873635.	IBA	Process
GO:0006099	tricarboxylic acid cycle	28017724.	IMP	Process
GO:0006099	tricarboxylic acid cycle	-	ISS	Process
GO:0006104	succinyl-CoA metabolic process	21873635.	IBA	Process
GO:0006105	succinate metabolic process	21873635.	IBA	Process
GO:0009142	nucleoside triphosphate biosynthetic process	21873635.	IBA	Process
GO:0045244	succinate-CoA ligase complex (GDP-forming)	-	ISS	Component
GO:0048037	cofactor binding	-	IEA	Function