EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0004913 (Gene tree)
Gene ID: 40607
Gene Symbol: Gnf1
Alias: -
Full Name: Germ line transcription factor 1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 3460
Position: chr3R: 4906622-4910081
Accession: FBgn0004913
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0078837	-	3208	-	FBpp0078478	986 (aa)	-	P35600
FBtr0100159	-	3274	-	FBpp0099511	1008 (aa)	-	UPI000007EB77

Gene Model

Click here to download FBgn0004913's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0004913's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0004913	Gnf1	79	46.231	ENSG00000035928	RFC1	94	56.667	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003677	DNA binding	1592002.	IDA	Function
GO:0003677	DNA binding	9647634.	NAS	Function
GO:0003689	DNA clamp loader activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	1592002.	IDA	Component
GO:0005663	DNA replication factor C complex	-	IEA	Component
GO:0005663	DNA replication factor C complex	9647634.	NAS	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006260	DNA replication	9647634.	NAS	Process
GO:0006281	DNA repair	-	IEA	Process
GO:0048813	dendrite morphogenesis	23977298.	IMP	Process