EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
FBgn0005411 (Gene tree)
Gene ID
32602
Gene Symbol
U2af50
Alias
-
Full Name
U2 small nuclear riboprotein auxiliary factor 50
Gene Type
protein_coding
Species
Drosophila_melanogaster
Status
confidence
Strand
Minus strand
Length
2344 bases
Position
chrX:16356696-16359039
Accession
FBgn0005411
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
FBpp0298006RRM_1PF00076.222e-3213
FBpp0298006RRM_1PF00076.222e-3223
FBpp0298006RRM_1PF00076.222e-3233
FBpp0074013RRM_1PF00076.224.4e-3213
FBpp0074013RRM_1PF00076.224.4e-3223
FBpp0074013RRM_1PF00076.224.4e-3233
FBpp0298007RRM_1PF00076.224.4e-3213
FBpp0298007RRM_1PF00076.224.4e-3223
FBpp0298007RRM_1PF00076.224.4e-3233
FBpp0298005RRM_1PF00076.225e-3213
FBpp0298005RRM_1PF00076.225e-3223
FBpp0298005RRM_1PF00076.225e-3233
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27197210The mRNA-bound proteome of the early fly embryoIC & embryos2016 Apr 28Wessels HHDOI: 10.1101/gr.200386.115
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
FBtr0074234-1527-FBpp0074013416 (aa)-Q24562
FBtr0307177-1371-FBpp0298006360 (aa)-M9NH51
FBtr0307176-1344-FBpp0298005427 (aa)-M9NF89
FBtr0307178-1473-FBpp0298007416 (aa)-Q24562
Gene Model
Click here to download FBgn0005411's gene model file
Protein-Protein Interaction (PPI)

Clik here to download FBgn0005411's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
FBgn0005411U2af508334.375FBgn0028577hfp5134.375
FBgn0005411U2af509857.641FBgn0034834LS28657.143
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
FBgn0005411U2af5010072.776ENSG00000063244U2AF29973.548Homo_sapiens
FBgn0005411U2af5010073.098ENSAPOG00000002208-8272.938Acanthochromis_polyacanthus
FBgn0005411U2af508669.255ENSAPOG00000023155u2af2a9969.255Acanthochromis_polyacanthus
FBgn0005411U2af508871.429ENSAMEG00000003864U2AF28371.633Ailuropoda_melanoleuca
FBgn0005411U2af5010071.429ENSACIG00000005749u2af2a9071.611Amphilophus_citrinellus
FBgn0005411U2af5010071.353ENSACIG00000014173-8571.285Amphilophus_citrinellus
FBgn0005411U2af5010071.429ENSAOCG00000015571u2af2a9765.111Amphiprion_ocellaris
FBgn0005411U2af5010072.826ENSAOCG00000003595-8272.680Amphiprion_ocellaris
FBgn0005411U2af5010072.554ENSAPEG00000020062-8372.423Amphiprion_percula
FBgn0005411U2af5010071.429ENSAPEG00000009376u2af2a9171.611Amphiprion_percula
FBgn0005411U2af5010071.429ENSATEG00000022332u2af2a9265.068Anabas_testudineus
FBgn0005411U2af5010072.554ENSATEG00000020577-8472.423Anabas_testudineus
FBgn0005411U2af5010072.727ENSACAG00000015489U2AF28372.843Anolis_carolinensis
FBgn0005411U2af508676.364ENSANAG00000028042U2AF27962.982Aotus_nancymaae
FBgn0005411U2af5010072.826ENSACLG00000020793-8272.680Astatotilapia_calliptera
FBgn0005411U2af5010071.429ENSACLG00000022181u2af2a9071.611Astatotilapia_calliptera
FBgn0005411U2af5010069.811ENSAMXG00000039454u2af2b8570.077Astyanax_mexicanus
FBgn0005411U2af5010070.745ENSAMXG00000033347u2af2a8371.795Astyanax_mexicanus
FBgn0005411U2af5010072.776ENSBTAG00000002830U2AF28572.890Bos_taurus
FBgn0005411U2af5010061.667WBGene00006697uaf-110056.849Caenorhabditis_elegans
FBgn0005411U2af5010072.340ENSCJAG00000017128U2AF28572.475Callithrix_jacchus
FBgn0005411U2af5010072.776ENSCAFG00000002551U2AF28272.890Canis_familiaris
FBgn0005411U2af5010072.340ENSCAFG00020015445U2AF28272.475Canis_lupus_dingo
FBgn0005411U2af5010061.741ENSCHIG00000023595U2AF28562.374Capra_hircus
FBgn0005411U2af5010072.340ENSTSYG00000007432U2AF28572.475Carlito_syrichta
FBgn0005411U2af5010072.340ENSCAPG00000008466U2AF28572.475Cavia_aperea
FBgn0005411U2af5010072.340ENSCPOG00000001582U2AF29364.055Cavia_porcellus
FBgn0005411U2af5010072.340ENSCCAG00000023336U2AF28272.475Cebus_capucinus
FBgn0005411U2af5010072.776ENSCATG00000004637U2AF28272.890Cercocebus_atys
FBgn0005411U2af5010072.776ENSCLAG00000000596U2AF28272.890Chinchilla_lanigera
FBgn0005411U2af5010072.776ENSCSAG00000001722U2AF28272.890Chlorocebus_sabaeus
FBgn0005411U2af5010071.429ENSCPBG00000004485U2AF29973.871Chrysemys_picta_bellii
FBgn0005411U2af5010067.120ENSCING00000003455-7966.925Ciona_intestinalis
FBgn0005411U2af5010065.946ENSCSAVG00000006813-8663.300Ciona_savignyi
FBgn0005411U2af508872.644ENSCANG00000031002-7772.779Colobus_angolensis_palliatus
FBgn0005411U2af5010066.310ENSCANG00000043845-8368.020Colobus_angolensis_palliatus
FBgn0005411U2af5010072.776ENSCGRG00001003185-8572.890Cricetulus_griseus_chok1gshd
FBgn0005411U2af5010068.378ENSCGRG00001007486-8368.367Cricetulus_griseus_chok1gshd
FBgn0005411U2af506473.077ENSCGRG00000004524-7473.077Cricetulus_griseus_crigri
FBgn0005411U2af5010068.378ENSCGRG00000018587-8368.367Cricetulus_griseus_crigri
FBgn0005411U2af507071.000ENSCSEG00000018709u2af2a7371.667Cynoglossus_semilaevis
FBgn0005411U2af5010071.390ENSCSEG00000020504-8671.134Cynoglossus_semilaevis
FBgn0005411U2af5010072.283ENSCVAG00000023307-8272.423Cyprinodon_variegatus
FBgn0005411U2af5010071.698ENSCVAG00000001259u2af2a9765.333Cyprinodon_variegatus
FBgn0005411U2af5010070.350ENSDARG00000012505u2af2a8271.429Danio_rerio
FBgn0005411U2af5010070.777ENSDARG00000011740u2af2b9364.944Danio_rerio
FBgn0005411U2af508872.644ENSDNOG00000047039U2AF27772.779Dasypus_novemcinctus
FBgn0005411U2af5010072.340ENSDORG00000003250U2af28272.475Dipodomys_ordii
FBgn0005411U2af5010059.299ENSEBUG00000001732U2AF28559.847Eptatretus_burgeri
FBgn0005411U2af5010069.003ENSEBUG00000010917U2AF28569.309Eptatretus_burgeri
FBgn0005411U2af5010072.340ENSEASG00005020708U2AF27772.475Equus_asinus_asinus
FBgn0005411U2af5010072.776ENSECAG00000010110U2AF28572.890Equus_caballus
FBgn0005411U2af5010069.973ENSELUG00000022291u2af2b8469.975Esox_lucius
FBgn0005411U2af5010070.106ENSELUG00000015850u2af2a8865.888Esox_lucius
FBgn0005411U2af5010073.713ENSELUG00000018459-8773.008Esox_lucius
FBgn0005411U2af5010072.340ENSFCAG00000011504U2AF28272.475Felis_catus
FBgn0005411U2af5010072.340ENSFDAG00000011264U2AF29167.352Fukomys_damarensis
FBgn0005411U2af5010071.698ENSFHEG00000016025u2af2a9765.333Fundulus_heteroclitus
FBgn0005411U2af5010070.968ENSGMOG00000004535u2af2a9266.200Gadus_morhua
FBgn0005411U2af509872.452ENSGALG00000052748U2AF25472.585Gallus_gallus
FBgn0005411U2af5010071.739ENSGAFG00000005628-8472.494Gambusia_affinis
FBgn0005411U2af5010071.698ENSGAFG00000013626u2af2a8665.333Gambusia_affinis
FBgn0005411U2af5010071.429ENSGACG00000010632U2AF29764.967Gasterosteus_aculeatus
FBgn0005411U2af5010070.620ENSGACG00000014500-8270.332Gasterosteus_aculeatus
FBgn0005411U2af508673.871ENSGAGG00000011849U2AF29973.871Gopherus_agassizii
FBgn0005411U2af506174.888ENSGGOG00000036399-8774.888Gorilla_gorilla
FBgn0005411U2af5010072.826ENSHBUG00000017424-8272.680Haplochromis_burtoni
FBgn0005411U2af5010071.429ENSHBUG00000013935u2af2a9071.611Haplochromis_burtoni
FBgn0005411U2af5010072.340ENSHGLG00000005889U2AF28272.475Heterocephalus_glaber_female
FBgn0005411U2af5010072.340ENSHGLG00100004757U2AF28572.475Heterocephalus_glaber_male
FBgn0005411U2af5010070.777ENSHCOG00000019367u2af2a9764.018Hippocampus_comes
FBgn0005411U2af5010070.380ENSIPUG00000009844-8570.361Ictalurus_punctatus
FBgn0005411U2af5010070.161ENSIPUG00000009077u2af28470.408Ictalurus_punctatus
FBgn0005411U2af5010069.272ENSIPUG00000007717u2af2a9265.035Ictalurus_punctatus
FBgn0005411U2af5010072.340ENSSTOG00000019595U2AF28272.475Ictidomys_tridecemlineatus
FBgn0005411U2af5010072.340ENSJJAG00000017705U2af28272.475Jaculus_jaculus
FBgn0005411U2af5010071.698ENSKMAG00000005960u2af2a8871.867Kryptolebias_marmoratus
FBgn0005411U2af5010070.557ENSLBEG00000005001-8570.529Labrus_bergylta
FBgn0005411U2af5010071.159ENSLBEG00000016162u2af2a9764.889Labrus_bergylta
FBgn0005411U2af5010072.507ENSLACG00000001648U2AF29972.507Latimeria_chalumnae
FBgn0005411U2af506576.132ENSLOCG00000008050u2af2b7476.046Lepisosteus_oculatus
FBgn0005411U2af5010072.358ENSLOCG00000010843-8965.831Lepisosteus_oculatus
FBgn0005411U2af5010066.757ENSLAFG00000028496-9361.086Loxodonta_africana
FBgn0005411U2af5010072.776ENSLAFG00000018056-8272.890Loxodonta_africana
FBgn0005411U2af5010072.340ENSMFAG00000038383U2AF28272.475Macaca_fascicularis
FBgn0005411U2af5010072.074ENSMMUG00000004810U2AF28272.222Macaca_mulatta
FBgn0005411U2af5010072.776ENSMNEG00000042096U2AF28672.475Macaca_nemestrina
FBgn0005411U2af5010072.776ENSMLEG00000032219U2AF27572.890Mandrillus_leucophaeus
FBgn0005411U2af5010071.739ENSMAMG00000020158-8271.649Mastacembelus_armatus
FBgn0005411U2af5010071.046ENSMAMG00000019817u2af2a9764.823Mastacembelus_armatus
FBgn0005411U2af5010072.826ENSMZEG00005023318-8272.680Maylandia_zebra
FBgn0005411U2af5010071.429ENSMZEG00005016563u2af2a9765.111Maylandia_zebra
FBgn0005411U2af5010072.340ENSMAUG00000008180U2af28372.475Mesocricetus_auratus
FBgn0005411U2af5010072.776ENSMICG00000027681U2AF28572.475Microcebus_murinus
FBgn0005411U2af5010067.116ENSMOCG00000007227-8267.263Microtus_ochrogaster
FBgn0005411U2af508671.290ENSMOCG00000001018-9971.290Microtus_ochrogaster
FBgn0005411U2af5010072.340ENSMOCG00000013214-8272.475Microtus_ochrogaster
FBgn0005411U2af5010068.586ENSMMOG00000000531-8568.408Mola_mola
FBgn0005411U2af5010071.429ENSMMOG00000016600u2af2a8971.611Mola_mola
FBgn0005411U2af5010071.698ENSMALG00000009985u2af2a8471.867Monopterus_albus
FBgn0005411U2af5010072.776MGP_CAROLIEiJ_G0029150U2af28272.890Mus_caroli
FBgn0005411U2af5010072.776ENSMUSG00000030435U2af29973.548Mus_musculus
FBgn0005411U2af5010072.776MGP_PahariEiJ_G0021017U2af28272.890Mus_pahari
FBgn0005411U2af5010072.776MGP_SPRETEiJ_G0030203U2af28272.890Mus_spretus
FBgn0005411U2af5010072.776ENSMPUG00000007135U2AF28272.890Mustela_putorius_furo
FBgn0005411U2af506472.034ENSMLUG00000011051-9872.034Myotis_lucifugus
FBgn0005411U2af5010072.340ENSNGAG00000020369U2af28272.475Nannospalax_galili
FBgn0005411U2af5010071.429ENSNBRG00000002568u2af2a9071.611Neolamprologus_brichardi
FBgn0005411U2af5010071.088ENSNBRG00000011100-8571.033Neolamprologus_brichardi
FBgn0005411U2af5010065.160ENSNLEG00000010562U2AF29973.548Nomascus_leucogenys
FBgn0005411U2af5010061.930ENSMEUG00000002346U2AF29657.303Notamacropus_eugenii
FBgn0005411U2af5010066.489ENSODEG00000012729-8166.919Octodon_degus
FBgn0005411U2af509958.380ENSODEG00000009254-8359.392Octodon_degus
FBgn0005411U2af5010072.826ENSONIG00000009682-8272.680Oreochromis_niloticus
FBgn0005411U2af5010071.429ENSONIG00000012793u2af2a9763.011Oreochromis_niloticus
FBgn0005411U2af5010071.698ENSORLG00000011545u2af2a8871.867Oryzias_latipes
FBgn0005411U2af5010071.698ENSORLG00020006941u2af2a8871.867Oryzias_latipes_hni
FBgn0005411U2af5010071.698ENSORLG00015012843u2af2a8569.639Oryzias_latipes_hsok
FBgn0005411U2af5010071.698ENSOMEG00000011386u2af2a8971.867Oryzias_melastigma
FBgn0005411U2af509852.747ENSOGAG00000034729-7852.747Otolemur_garnettii
FBgn0005411U2af5010072.340ENSOGAG00000007206-8272.475Otolemur_garnettii
FBgn0005411U2af5010066.402ENSOARG00000001091U2AF28266.915Ovis_aries
FBgn0005411U2af5010072.340ENSPPAG00000039782U2AF28272.475Pan_paniscus
FBgn0005411U2af5010072.340ENSPPRG00000013843U2AF28272.475Panthera_pardus
FBgn0005411U2af5010067.639ENSPTIG00000005489U2AF28568.010Panthera_tigris_altaica
FBgn0005411U2af5010072.340ENSPTRG00000011523U2AF29973.548Pan_troglodytes
FBgn0005411U2af5010072.776ENSPANG00000008459U2AF28272.890Papio_anubis
FBgn0005411U2af5010071.196ENSPKIG00000014878-8371.355Paramormyrops_kingsleyae
FBgn0005411U2af5010071.505ENSPKIG00000024346u2af2b8971.684Paramormyrops_kingsleyae
FBgn0005411U2af5010054.522ENSPSIG00000008014U2AF28555.528Pelodiscus_sinensis
FBgn0005411U2af5010064.136ENSPMGG00000022980u2af2a8864.677Periophthalmus_magnuspinnatus
FBgn0005411U2af5010072.340ENSPEMG00000007378U2af29973.548Peromyscus_maniculatus_bairdii
FBgn0005411U2af5010068.449ENSPMAG00000004097u2af2a8571.066Petromyzon_marinus
FBgn0005411U2af5010072.267ENSPCIG00000018013U2AF28272.727Phascolarctos_cinereus
FBgn0005411U2af5010072.554ENSPFOG00000006433-8472.680Poecilia_formosa
FBgn0005411U2af5010071.698ENSPFOG00000010799u2af2a8271.867Poecilia_formosa
FBgn0005411U2af5010071.698ENSPLAG00000014365u2af2a9765.333Poecilia_latipinna
FBgn0005411U2af5010072.011ENSPLAG00000003275-8572.680Poecilia_latipinna
FBgn0005411U2af5010071.698ENSPMEG00000002969u2af2a9765.333Poecilia_mexicana
FBgn0005411U2af5010072.283ENSPMEG00000003734-8572.423Poecilia_mexicana
FBgn0005411U2af5010072.011ENSPREG00000013036-10071.918Poecilia_reticulata
FBgn0005411U2af5010071.698ENSPREG00000008739u2af2a8871.867Poecilia_reticulata
FBgn0005411U2af507671.986ENSPPYG00000010429-7871.986Pongo_abelii
FBgn0005411U2af509963.415ENSPCAG00000003709-9563.520Procavia_capensis
FBgn0005411U2af5010055.467ENSPCAG00000014399-8256.456Procavia_capensis
FBgn0005411U2af5010072.340ENSPCOG00000025870U2AF28672.475Propithecus_coquereli
FBgn0005411U2af5010072.340ENSPVAG00000004540U2AF28272.475Pteropus_vampyrus
FBgn0005411U2af5010071.429ENSPNYG00000001438u2af2a9071.611Pundamilia_nyererei
FBgn0005411U2af5010072.826ENSPNYG00000011605-8272.680Pundamilia_nyererei
FBgn0005411U2af5010070.620ENSPNAG00000017620u2af2a9266.434Pygocentrus_nattereri
FBgn0005411U2af509973.297ENSPNAG00000007182-8272.938Pygocentrus_nattereri
FBgn0005411U2af5010071.159ENSPNAG00000027289u2af2b8571.355Pygocentrus_nattereri
FBgn0005411U2af5010072.776ENSRNOG00000015914U2af28272.890Rattus_norvegicus
FBgn0005411U2af5010072.074ENSRBIG00000041018U2AF28272.222Rhinopithecus_bieti
FBgn0005411U2af5010068.194ENSRROG00000031238-8268.542Rhinopithecus_roxellana
FBgn0005411U2af508872.072ENSRROG00000031103-8472.238Rhinopithecus_roxellana
FBgn0005411U2af5010072.776ENSSBOG00000023891U2AF28272.890Saimiri_boliviensis_boliviensis
FBgn0005411U2af505670.833ENSSHAG00000001167U2AF26462.950Sarcophilus_harrisii
FBgn0005411U2af5010072.358ENSSFOG00015003884-9372.634Scleropages_formosus
FBgn0005411U2af5010071.505ENSSFOG00015019182u2af2b8871.320Scleropages_formosus
FBgn0005411U2af5010072.826ENSSMAG00000013779-8272.680Scophthalmus_maximus
FBgn0005411U2af5010071.429ENSSMAG00000012582u2af2a8471.611Scophthalmus_maximus
FBgn0005411U2af5010070.712ENSSDUG00000021434-8170.677Seriola_dumerili
FBgn0005411U2af5010071.429ENSSDUG00000009457u2af2a9765.111Seriola_dumerili
FBgn0005411U2af5010070.712ENSSLDG00000016151-8570.677Seriola_lalandi_dorsalis
FBgn0005411U2af5010071.429ENSSLDG00000022742u2af2a9765.111Seriola_lalandi_dorsalis
FBgn0005411U2af5010071.240ENSSPUG00000010229U2AF28371.429Sphenodon_punctatus
FBgn0005411U2af5010072.826ENSSPAG00000005241-8272.680Stegastes_partitus
FBgn0005411U2af5010071.429ENSSPAG00000022519u2af2a8471.611Stegastes_partitus
FBgn0005411U2af5010072.776ENSSSCG00000034815U2AF28572.890Sus_scrofa
FBgn0005411U2af5010070.350ENSTRUG00000005514u2af2a8670.588Takifugu_rubripes
FBgn0005411U2af5010072.283ENSTNIG00000011257-8471.795Tetraodon_nigroviridis
FBgn0005411U2af5010071.429ENSTNIG00000008106U2AF29266.438Tetraodon_nigroviridis
FBgn0005411U2af508868.997ENSTBEG00000009104U2AF29469.341Tupaia_belangeri
FBgn0005411U2af5010072.340ENSTTRG00000000987U2AF28272.475Tursiops_truncatus
FBgn0005411U2af5010072.340ENSUAMG00000019883U2AF28672.475Ursus_americanus
FBgn0005411U2af5010072.340ENSUMAG00000024586U2AF29973.548Ursus_maritimus
FBgn0005411U2af5010072.776ENSVVUG00000006956U2AF25872.890Vulpes_vulpes
FBgn0005411U2af5010070.789ENSXETG00000019128u2af28571.000Xenopus_tropicalis
FBgn0005411U2af5010071.698ENSXCOG00000019406u2af2a8871.867Xiphophorus_couchianus
FBgn0005411U2af5010072.011ENSXMAG00000000768-7972.680Xiphophorus_maculatus
FBgn0005411U2af5010071.698ENSXMAG00000011979u2af2a9765.333Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000243commitment complex21873635.IBAComponent
GO:0000381regulation of alternative mRNA splicing, via spliceosome15492211.HMPProcess
GO:0000398mRNA splicing, via spliceosome18981222.ICProcess
GO:0000398mRNA splicing, via spliceosome9531538.IMPProcess
GO:0000398mRNA splicing, via spliceosome10908584.ISSProcess
GO:0003723RNA binding21406555.IMPFunction
GO:0003729mRNA binding10908586.ISSFunction
GO:0005515protein binding21406555.IPIFunction
GO:0005634nucleus15492211.ICComponent
GO:0005654nucleoplasm25294944.HDAComponent
GO:0005681spliceosomal complex10908584.ISSComponent
GO:0008187poly-pyrimidine tract binding21873635.IBAFunction
GO:0008187poly-pyrimidine tract binding9632785.IDAFunction
GO:0008380RNA splicing21406555.IMPProcess
GO:0016607nuclear speck21873635.IBAComponent
GO:0030628pre-mRNA 3'-splice site binding21873635.IBAFunction
GO:0046833positive regulation of RNA export from nucleus21725067.IMPProcess
GO:0051168nuclear export15200955.IMPProcess
GO:0071004U2-type prespliceosome21873635.IBAComponent
GO:0071011precatalytic spliceosome18981222.HDAComponent
GO:0089701U2AF21873635.IBAComponent
GO:0089701U2AF9632785.IDAComponent

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