EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
FBgn0005648 (Gene tree)
Gene ID
35788
Gene Symbol
Pabp2
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Drosophila_melanogaster
Status
confidence
Strand
Plus strand
Length
2944 bases
Position
chr2R:8131431-8134374
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
FBpp0087863RRM_1PF00076.221.6e-1511
FBpp0087864RRM_1PF00076.221.6e-1511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27378189Global changes of the RNA bound proteome during the maternal-to-zygotic transition in DrosophilaIC & embryos.MZT2016 Jul 5Sysoev VODOI: 10.1038/ncomms12128
27197210The mRNA-bound proteome of the early fly embryoIC & embryos2016 Apr 28Wessels HHDOI: 10.1101/gr.200386.115
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
FBtr0088786-1378-FBpp0087864224 (aa)-Q7KNF2
FBtr0088785-1869-FBpp0087863224 (aa)-Q7KNF2
Gene Model
Click here to download FBgn0005648's gene model file
Protein-Protein Interaction (PPI)

Clik here to download FBgn0005648's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
FBgn0005648Pabp28263.351ENSG00000100836PABPN110061.236Homo_sapiens
FBgn0005648Pabp28959.420ENSG00000258643BCL2L2-PABPN16159.420Homo_sapiens
FBgn0005648Pabp29758.333ENSAPOG00000016425pabpn110057.983Acanthochromis_polyacanthus
FBgn0005648Pabp28162.963ENSAMEG00000007048BCL2L2-PABPN110062.963Ailuropoda_melanoleuca
FBgn0005648Pabp29856.897ENSACIG00000021744pabpn110062.712Amphilophus_citrinellus
FBgn0005648Pabp29259.535ENSAOCG00000015805pabpn110057.983Amphiprion_ocellaris
FBgn0005648Pabp29259.535ENSAPEG00000009623pabpn110057.983Amphiprion_percula
FBgn0005648Pabp29259.535ENSATEG00000020531pabpn110057.983Anabas_testudineus
FBgn0005648Pabp27368.263ENSACAG00000006185-6764.737Anolis_carolinensis
FBgn0005648Pabp28263.351ENSANAG00000024513-7958.108Aotus_nancymaae
FBgn0005648Pabp29856.652ENSACLG00000016374pabpn17856.652Astatotilapia_calliptera
FBgn0005648Pabp29857.778ENSAMXG00000000452pabpn110062.360Astyanax_mexicanus
FBgn0005648Pabp28262.827ENSBTAG00000053753-7162.827Bos_taurus
FBgn0005648Pabp28263.351ENSBTAG00000006884PABPN16263.351Bos_taurus
FBgn0005648Pabp26870.130ENSBTAG00000050594-6965.714Bos_taurus
FBgn0005648Pabp26454.483WBGene00003904pabp-210044.681Caenorhabditis_elegans
FBgn0005648Pabp28263.351ENSCJAG00000007960-8159.174Callithrix_jacchus
FBgn0005648Pabp27159.281ENSCJAG00000004407-8960.112Callithrix_jacchus
FBgn0005648Pabp28263.351ENSCAFG00000011482PABPN16263.351Canis_familiaris
FBgn0005648Pabp28263.351ENSCAFG00020007298-6263.351Canis_lupus_dingo
FBgn0005648Pabp28263.351ENSCAFG00020006651-6263.351Canis_lupus_dingo
FBgn0005648Pabp28263.351ENSCHIG00000012184PABPN16959.906Capra_hircus
FBgn0005648Pabp28959.420ENSTSYG00000033996BCL2L2-PABPN110061.236Carlito_syrichta
FBgn0005648Pabp25963.235ENSCAPG00000009461-9763.235Cavia_aperea
FBgn0005648Pabp28262.827ENSCPOG00000025574PABPN16262.827Cavia_porcellus
FBgn0005648Pabp28263.351ENSCCAG00000033954BCL2L2-PABPN18159.174Cebus_capucinus
FBgn0005648Pabp28959.420ENSCATG00000038536BCL2L2-PABPN18159.174Cercocebus_atys
FBgn0005648Pabp27057.669ENSCLAG00000012423PABPN16157.669Chinchilla_lanigera
FBgn0005648Pabp28262.304ENSCSAG00000016036PABPN16262.304Chlorocebus_sabaeus
FBgn0005648Pabp28158.201ENSCHOG00000004798BCL2L2-PABPN18158.201Choloepus_hoffmanni
FBgn0005648Pabp27162.874ENSCPBG00000026060-10063.483Chrysemys_picta_bellii
FBgn0005648Pabp29948.430ENSCING00000012468-9050.673Ciona_intestinalis
FBgn0005648Pabp27653.179ENSCSAVG00000002001-10056.069Ciona_savignyi
FBgn0005648Pabp28959.420ENSCANG00000009750BCL2L2-PABPN110061.236Colobus_angolensis_palliatus
FBgn0005648Pabp28254.737ENSCANG00000030980-7650.952Colobus_angolensis_palliatus
FBgn0005648Pabp28263.874ENSCGRG00001019696Pabpn110061.798Cricetulus_griseus_chok1gshd
FBgn0005648Pabp26769.935ENSCGRG00000011102Pabpn19569.935Cricetulus_griseus_crigri
FBgn0005648Pabp210054.825ENSCSEG00000008774pabpn18563.131Cynoglossus_semilaevis
FBgn0005648Pabp28262.703ENSCVAG00000003152pabpn19757.511Cyprinodon_variegatus
FBgn0005648Pabp29757.895ENSDARG00000045373pabpn110057.563Danio_rerio
FBgn0005648Pabp27552.976ENSDARG00000087996pabpn1l8954.730Danio_rerio
FBgn0005648Pabp28263.351ENSDNOG00000023682PABPN16263.351Dasypus_novemcinctus
FBgn0005648Pabp28262.827ENSDORG00000028966-6262.827Dipodomys_ordii
FBgn0005648Pabp25864.615ENSDORG00000023928-9064.615Dipodomys_ordii
FBgn0005648Pabp28261.658ENSEBUG00000002322pabpn18261.658Eptatretus_burgeri
FBgn0005648Pabp28263.351ENSEASG00005011716PABPN16263.351Equus_asinus_asinus
FBgn0005648Pabp27964.835ENSECAG00000011652PABPN16064.246Equus_caballus
FBgn0005648Pabp28262.632ENSEEUG00000012973-6562.632Erinaceus_europaeus
FBgn0005648Pabp29059.434ENSELUG00000022654pabpn19757.872Esox_lucius
FBgn0005648Pabp28263.351ENSFCAG00000031922PABPN16263.351Felis_catus
FBgn0005648Pabp27159.880ENSFDAG00000018381BCL2L2-PABPN110060.674Fukomys_damarensis
FBgn0005648Pabp210055.844ENSFHEG00000007215pabpn19758.442Fundulus_heteroclitus
FBgn0005648Pabp28261.828ENSGMOG00000003922pabpn17856.140Gadus_morhua
FBgn0005648Pabp26472.222ENSGALG00000052930-6260.190Gallus_gallus
FBgn0005648Pabp28262.703ENSGAFG00000017099pabpn19758.547Gambusia_affinis
FBgn0005648Pabp210054.894ENSGACG00000002167pabpn110054.365Gasterosteus_aculeatus
FBgn0005648Pabp29251.659ENSGGOG00000039675-8848.707Gorilla_gorilla
FBgn0005648Pabp28254.450ENSGGOG00000025919-9953.073Gorilla_gorilla
FBgn0005648Pabp28263.351ENSGGOG00000022683-8159.174Gorilla_gorilla
FBgn0005648Pabp29259.535ENSHBUG00000019523pabpn110057.983Haplochromis_burtoni
FBgn0005648Pabp29054.028ENSHGLG00000018588-7054.950Heterocephalus_glaber_female
FBgn0005648Pabp27146.667ENSHGLG00000009842-10048.295Heterocephalus_glaber_female
FBgn0005648Pabp28262.827ENSHGLG00000002927-9270.068Heterocephalus_glaber_female
FBgn0005648Pabp27152.299ENSHGLG00100018935-10055.932Heterocephalus_glaber_male
FBgn0005648Pabp27658.511ENSHGLG00100015565-7154.950Heterocephalus_glaber_male
FBgn0005648Pabp28559.487ENSHGLG00100006673-9270.068Heterocephalus_glaber_male
FBgn0005648Pabp29259.535ENSHCOG00000004655pabpn110058.228Hippocampus_comes
FBgn0005648Pabp29259.070ENSIPUG00000008085PABPN110057.563Ictalurus_punctatus
FBgn0005648Pabp28860.606ENSIPUG00000000180-9957.391Ictalurus_punctatus
FBgn0005648Pabp27160.479ENSSTOG00000029847BCL2L2-PABPN110061.236Ictidomys_tridecemlineatus
FBgn0005648Pabp27160.479ENSJJAG00000023507Gm2052110061.236Jaculus_jaculus
FBgn0005648Pabp29759.910ENSKMAG00000018748pabpn19757.940Kryptolebias_marmoratus
FBgn0005648Pabp29758.333ENSLBEG00000027266pabpn110057.983Labrus_bergylta
FBgn0005648Pabp26766.883ENSLACG00000000646pabpn19256.459Latimeria_chalumnae
FBgn0005648Pabp28752.821ENSLOCG00000004694pabpn1l9950.926Lepisosteus_oculatus
FBgn0005648Pabp29758.929ENSLOCG00000000796pabpn18058.929Lepisosteus_oculatus
FBgn0005648Pabp26362.838ENSLAFG00000031227-9862.838Loxodonta_africana
FBgn0005648Pabp26056.944ENSMFAG00000031355-9956.944Macaca_fascicularis
FBgn0005648Pabp28959.420ENSMFAG00000032183BCL2L2-PABPN110061.236Macaca_fascicularis
FBgn0005648Pabp28959.420ENSMMUG00000014747BCL2L2-PABPN110063.014Macaca_mulatta
FBgn0005648Pabp28253.535ENSMMUG00000048382-7051.389Macaca_mulatta
FBgn0005648Pabp27251.765ENSMNEG00000035750-9956.944Macaca_nemestrina
FBgn0005648Pabp28959.420ENSMNEG00000045065BCL2L2-PABPN18159.174Macaca_nemestrina
FBgn0005648Pabp28959.420ENSMLEG00000043862BCL2L2-PABPN110061.236Mandrillus_leucophaeus
FBgn0005648Pabp27253.333ENSMLEG00000034623-9958.993Mandrillus_leucophaeus
FBgn0005648Pabp29758.333ENSMAMG00000007979pabpn17957.692Mastacembelus_armatus
FBgn0005648Pabp29758.333ENSMZEG00005011904pabpn17758.333Maylandia_zebra
FBgn0005648Pabp28959.903ENSMAUG00000007383Gm205216463.874Mesocricetus_auratus
FBgn0005648Pabp29459.009ENSMICG00000010002BCL2L2-PABPN18159.174Microcebus_murinus
FBgn0005648Pabp28959.903ENSMOCG00000018557Gm205219369.935Microtus_ochrogaster
FBgn0005648Pabp29758.333ENSMMOG00000005405pabpn110057.983Mola_mola
FBgn0005648Pabp27962.088ENSMODG00000004535-6063.187Monodelphis_domestica
FBgn0005648Pabp29758.333ENSMALG00000019612pabpn17857.692Monopterus_albus
FBgn0005648Pabp28263.874MGP_CAROLIEiJ_G0019277Pabpn19668.354Mus_caroli
FBgn0005648Pabp28959.903MGP_CAROLIEiJ_G0019276Gm205216159.903Mus_caroli
FBgn0005648Pabp28959.903ENSMUSG00000092232Gm205216159.903Mus_musculus
FBgn0005648Pabp28263.874ENSMUSG00000022194Pabpn19668.354Mus_musculus
FBgn0005648Pabp28263.874MGP_PahariEiJ_G0030295Pabpn110080.952Mus_pahari
FBgn0005648Pabp28959.903MGP_PahariEiJ_G0030294Gm205216159.903Mus_pahari
FBgn0005648Pabp28263.874MGP_SPRETEiJ_G0020166Pabpn19668.354Mus_spretus
FBgn0005648Pabp28959.903MGP_SPRETEiJ_G0020165Gm205216159.903Mus_spretus
FBgn0005648Pabp26761.290ENSMPUG00000006775-9962.048Mustela_putorius_furo
FBgn0005648Pabp27464.497ENSMLUG00000012452-6361.658Myotis_lucifugus
FBgn0005648Pabp28162.434ENSMLUG00000003800-10062.434Myotis_lucifugus
FBgn0005648Pabp28261.257ENSMLUG00000028677-7657.895Myotis_lucifugus
FBgn0005648Pabp28959.420ENSNGAG00000019529Gm205216159.420Nannospalax_galili
FBgn0005648Pabp29758.333ENSNBRG00000023955pabpn110062.712Neolamprologus_brichardi
FBgn0005648Pabp28959.420ENSNLEG00000015007-6863.351Nomascus_leucogenys
FBgn0005648Pabp26248.611ENSNLEG00000035292-9748.611Nomascus_leucogenys
FBgn0005648Pabp28553.093ENSNLEG00000030598-7353.093Nomascus_leucogenys
FBgn0005648Pabp28258.511ENSODEG00000003739-7054.369Octodon_degus
FBgn0005648Pabp28958.937ENSODEG00000002083BCL2L2-PABPN16262.827Octodon_degus
FBgn0005648Pabp27650.562ENSODEG00000011555-9550.562Octodon_degus
FBgn0005648Pabp29758.333ENSONIG00000008112pabpn17758.333Oreochromis_niloticus
FBgn0005648Pabp26363.699ENSOANG00000009218-10063.699Ornithorhynchus_anatinus
FBgn0005648Pabp28262.827ENSOCUG00000016174PABPN17859.434Oryctolagus_cuniculus
FBgn0005648Pabp29759.009ENSORLG00000027900pabpn19059.009Oryzias_latipes
FBgn0005648Pabp29260.287ENSORLG00020004681pabpn17658.333Oryzias_latipes_hni
FBgn0005648Pabp29260.287ENSORLG00015000018pabpn19758.621Oryzias_latipes_hsok
FBgn0005648Pabp29858.407ENSOMEG00000016618pabpn18258.407Oryzias_melastigma
FBgn0005648Pabp28263.351ENSOGAG00000008710PABPN16263.351Otolemur_garnettii
FBgn0005648Pabp28959.420ENSOARG00000019336BCL2L2-PABPN15659.420Ovis_aries
FBgn0005648Pabp27150.000ENSPPAG00000039421-10051.412Pan_paniscus
FBgn0005648Pabp28959.420ENSPPAG00000028984BCL2L2-PABPN19962.048Pan_paniscus
FBgn0005648Pabp28263.351ENSPPRG00000010567PABPN16263.351Panthera_pardus
FBgn0005648Pabp27160.479ENSPTIG00000001063BCL2L2-PABPN110061.236Panthera_tigris_altaica
FBgn0005648Pabp28959.420ENSPTRG00000006167BCL2L28159.174Pan_troglodytes
FBgn0005648Pabp28850.495ENSPTRG00000047273-7550.495Pan_troglodytes
FBgn0005648Pabp28959.420ENSPANG00000021100BCL2L2-PABPN18159.174Papio_anubis
FBgn0005648Pabp28254.315ENSPANG00000023326-9958.042Papio_anubis
FBgn0005648Pabp29758.333ENSPKIG00000008144-7858.120Paramormyrops_kingsleyae
FBgn0005648Pabp210055.230ENSPKIG00000018052pabpn110057.741Paramormyrops_kingsleyae
FBgn0005648Pabp26961.290ENSPKIG00000008340pabpn1l8954.497Paramormyrops_kingsleyae
FBgn0005648Pabp25067.257ENSPSIG00000011959-8367.257Pelodiscus_sinensis
FBgn0005648Pabp29758.559ENSPMGG00000022027pabpn17858.559Periophthalmus_magnuspinnatus
FBgn0005648Pabp28959.903ENSPEMG00000008332Gm205218971.429Peromyscus_maniculatus_bairdii
FBgn0005648Pabp26369.014ENSPMAG00000006212pabpn110051.852Petromyzon_marinus
FBgn0005648Pabp28260.733ENSPCIG00000027751-6261.780Phascolarctos_cinereus
FBgn0005648Pabp28262.703ENSPFOG00000010351pabpn19657.265Poecilia_formosa
FBgn0005648Pabp28262.703ENSPLAG00000022696pabpn17656.957Poecilia_latipinna
FBgn0005648Pabp28262.703ENSPMEG00000020856pabpn19757.265Poecilia_mexicana
FBgn0005648Pabp28262.703ENSPREG00000011278pabpn19757.265Poecilia_reticulata
FBgn0005648Pabp27864.246ENSPPYG00000005663PABPN16464.246Pongo_abelii
FBgn0005648Pabp27852.778ENSPCAG00000005902PABPN15357.051Procavia_capensis
FBgn0005648Pabp29459.009ENSPCOG00000028047BCL2L2-PABPN18159.174Propithecus_coquereli
FBgn0005648Pabp28561.421ENSPVAG00000005270PABPN16362.827Pteropus_vampyrus
FBgn0005648Pabp29259.535ENSPNYG00000013182pabpn110057.983Pundamilia_nyererei
FBgn0005648Pabp29758.333ENSPNAG00000023526pabpn110057.983Pygocentrus_nattereri
FBgn0005648Pabp26361.972ENSPNAG00000021666pabpn1l9955.122Pygocentrus_nattereri
FBgn0005648Pabp28263.874ENSRNOG00000042195Pabpn16363.874Rattus_norvegicus
FBgn0005648Pabp28560.000ENSRBIG00000040762BCL2L2-PABPN15960.000Rhinopithecus_bieti
FBgn0005648Pabp28851.415ENSRBIG00000039547-7751.415Rhinopithecus_bieti
FBgn0005648Pabp29054.327ENSRBIG00000042811-7957.895Rhinopithecus_bieti
FBgn0005648Pabp28851.887ENSRROG00000040409-7751.429Rhinopithecus_roxellana
FBgn0005648Pabp28560.000ENSRROG00000045535BCL2L2-PABPN110061.236Rhinopithecus_roxellana
FBgn0005648Pabp28252.105ENSRROG00000036409-5852.105Rhinopithecus_roxellana
FBgn0005648Pabp28955.909ENSSBOG00000026930BCL2L2-PABPN19962.048Saimiri_boliviensis_boliviensis
FBgn0005648Pabp29748.918ENSSHAG00000007707-9748.918Sarcophilus_harrisii
FBgn0005648Pabp28160.317ENSSHAG00000014841-8761.376Sarcophilus_harrisii
FBgn0005648Pabp28364.362ENSSFOG00015012565pabpn18963.636Scleropages_formosus
FBgn0005648Pabp29260.465ENSSFOG00015014718pabpn110058.824Scleropages_formosus
FBgn0005648Pabp28152.747ENSSFOG00015015833pabpn1l9750.230Scleropages_formosus
FBgn0005648Pabp29758.333ENSSMAG00000020157pabpn110057.983Scophthalmus_maximus
FBgn0005648Pabp29758.333ENSSDUG00000020582pabpn17857.692Seriola_dumerili
FBgn0005648Pabp29259.535ENSSLDG00000007118pabpn110057.983Seriola_lalandi_dorsalis
FBgn0005648Pabp26365.517ENSSPUG00000018308-10062.921Sphenodon_punctatus
FBgn0005648Pabp29757.759ENSSPAG00000021658pabpn110057.322Stegastes_partitus
FBgn0005648Pabp28959.420ENSSSCG00000002023PABPN16263.351Sus_scrofa
FBgn0005648Pabp26559.459ENSSSCG00000034805-6059.459Sus_scrofa
FBgn0005648Pabp29758.333ENSTRUG00000023664pabpn110057.983Takifugu_rubripes
FBgn0005648Pabp28364.894ENSTNIG00000005369pabpn18564.894Tetraodon_nigroviridis
FBgn0005648Pabp28263.351ENSUAMG00000024460PABPN16263.351Ursus_americanus
FBgn0005648Pabp28959.420ENSUMAG00000014288BCL2L2-PABPN16159.420Ursus_maritimus
FBgn0005648Pabp28959.420ENSVVUG00000019912BCL2L2-PABPN17462.963Vulpes_vulpes
FBgn0005648Pabp28262.632ENSXETG00000014597pabpn16463.158Xenopus_tropicalis
FBgn0005648Pabp28262.703ENSXMAG00000006196pabpn19758.547Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000289nuclear-transcribed mRNA poly(A) tail shortening16198293.IMPProcess
GO:0000398mRNA splicing, via spliceosome18981222.ICProcess
GO:0003723RNA binding10481015.IDAFunction
GO:0003729mRNA binding10908586.ISSFunction
GO:0005515protein binding19364924.IPIFunction
GO:0005634nucleus26896675.HDAComponent
GO:0005634nucleus10481015.16198293.16642034.IDAComponent
GO:0005737cytoplasm10481015.16198293.IDAComponent
GO:0006378mRNA polyadenylation10481015.IDAProcess
GO:0006378mRNA polyadenylation16198293.IMPProcess
GO:0008143poly(A) binding10481015.IDAFunction
GO:0008143poly(A) binding10908584.ISSFunction
GO:0060050positive regulation of protein glycosylation21203496.IMPProcess
GO:0071011precatalytic spliceosome18981222.HDAComponent
GO:0071013catalytic step 2 spliceosome18981222.HDAComponent
GO:1904247positive regulation of polynucleotide adenylyltransferase activity-IEAProcess

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