EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Gene Ontology

Description

Ensembl ID: FBgn0005649 (Gene tree)
Gene ID: 42848
Gene Symbol: Rox8
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 5210 bases
Position: chr3R:24043056-24048265
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0083977	RRM_5	PF13893.6	1.5e-08	1	2
FBpp0083977	RRM_5	PF13893.6	1.5e-08	2	2
FBpp0083979	RRM_5	PF13893.6	1.5e-08	1	2
FBpp0083979	RRM_5	PF13893.6	1.5e-08	2	2
FBpp0083976	RRM_5	PF13893.6	1.6e-08	1	2
FBpp0083976	RRM_5	PF13893.6	1.6e-08	2	2
FBpp0305402	RRM_5	PF13893.6	1.6e-08	1	2
FBpp0305402	RRM_5	PF13893.6	1.6e-08	2	2
FBpp0305403	RRM_5	PF13893.6	1.6e-08	1	2
FBpp0305403	RRM_5	PF13893.6	1.6e-08	2	2
FBpp0305404	RRM_5	PF13893.6	1.6e-08	1	2
FBpp0305404	RRM_5	PF13893.6	1.6e-08	2	2
FBpp0083977	RRM_1	PF00076.22	1.1e-54	1	3
FBpp0083977	RRM_1	PF00076.22	1.1e-54	2	3
FBpp0083977	RRM_1	PF00076.22	1.1e-54	3	3
FBpp0083979	RRM_1	PF00076.22	1.1e-54	1	3
FBpp0083979	RRM_1	PF00076.22	1.1e-54	2	3
FBpp0083979	RRM_1	PF00076.22	1.1e-54	3	3
FBpp0083976	RRM_1	PF00076.22	1.1e-54	1	3
FBpp0083976	RRM_1	PF00076.22	1.1e-54	2	3
FBpp0083976	RRM_1	PF00076.22	1.1e-54	3	3
FBpp0305402	RRM_1	PF00076.22	1.1e-54	1	3
FBpp0305402	RRM_1	PF00076.22	1.1e-54	2	3
FBpp0305402	RRM_1	PF00076.22	1.1e-54	3	3
FBpp0305403	RRM_1	PF00076.22	1.1e-54	1	3
FBpp0305403	RRM_1	PF00076.22	1.1e-54	2	3
FBpp0305403	RRM_1	PF00076.22	1.1e-54	3	3
FBpp0305404	RRM_1	PF00076.22	1.1e-54	1	3
FBpp0305404	RRM_1	PF00076.22	1.1e-54	2	3
FBpp0305404	RRM_1	PF00076.22	1.1e-54	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0084592	-	3218	-	FBpp0083977	464 (aa)	-	Q9VCE3
FBtr0084591	-	3300	-	FBpp0083976	470 (aa)	-	Q8IMX4
FBtr0333200	-	3222	-	FBpp0305402	470 (aa)	-	Q8IMX4
FBtr0333201	-	3328	-	FBpp0305403	470 (aa)	-	Q8IMX4
FBtr0333202	-	3370	-	FBpp0305404	470 (aa)	-	Q8IMX4
FBtr0084594	-	3298	-	FBpp0083979	464 (aa)	-	Q08212

Gene Model

Click here to download FBgn0005649's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0005649's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0005649	Rox8	62	39.744	FBgn0086675	fne	74	39.744
FBgn0005649	Rox8	59	30.065	FBgn0264270	Sxl	50	30.065
FBgn0005649	Rox8	62	41.250	FBgn0260400	elav	69	42.308
FBgn0005649	Rox8	59	37.079	FBgn0010263	Rbp9	56	37.079

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	19218244.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0005685	U1 snRNP	10908584.	ISS	Component