EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0010412 (Gene tree)
Gene ID: 32635
Gene Symbol: RpS19a
Alias: -
Full Name: Ribosomal protein S19a
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 1356 bases
Position: chrX:16637894-16639249
Accession: FBgn0010412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0074086	Ribosomal_S19e	PF01090.19	8.9e-54	1	1
FBpp0074087	Ribosomal_S19e	PF01090.19	8.9e-54	1	1
FBpp0074088	Ribosomal_S19e	PF01090.19	8.9e-54	1	1
FBpp0309135	Ribosomal_S19e	PF01090.19	8.9e-54	1	1
FBpp0311350	Ribosomal_S19e	PF01090.19	8.9e-54	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0074312	-	642	-	FBpp0074087	156 (aa)	-	P39018
FBtr0345129	-	678	-	FBpp0311350	156 (aa)	-	P39018
FBtr0340149	-	949	-	FBpp0309135	156 (aa)	-	P39018
FBtr0074313	-	925	-	FBpp0074088	156 (aa)	-	P39018
FBtr0074311	-	620	-	FBpp0074086	156 (aa)	-	P39018

Gene Model

Click here to download FBgn0010412's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0010412's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0010412	RpS19a	99	65.806	FBgn0039129	RpS19b	100	65.806

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0010412	RpS19a	89	45.324	ENSCAFG00000032295	-	93	45.324	Canis_familiaris
FBgn0010412	RpS19a	88	43.478	ENSCHIG00000026870	-	92	43.478	Capra_hircus
FBgn0010412	RpS19a	88	50.000	ENSTSYG00000032713	-	95	50.000	Carlito_syrichta
FBgn0010412	RpS19a	88	45.652	ENSTSYG00000035711	-	94	45.652	Carlito_syrichta
FBgn0010412	RpS19a	88	44.928	ENSCGRG00001014804	-	94	44.928	Cricetulus_griseus_chok1gshd
FBgn0010412	RpS19a	88	44.928	ENSCGRG00000010731	-	94	44.928	Cricetulus_griseus_crigri
FBgn0010412	RpS19a	88	47.826	ENSEBUG00000008731	-	95	47.826	Eptatretus_burgeri
FBgn0010412	RpS19a	77	35.833	ENSNLEG00000027781	-	80	35.833	Nomascus_leucogenys
FBgn0010412	RpS19a	88	52.899	ENSPPAG00000041345	-	86	52.941	Pan_paniscus
FBgn0010412	RpS19a	88	44.928	ENSPTRG00000048711	-	94	44.928	Pan_troglodytes
FBgn0010412	RpS19a	88	60.145	ENSPANG00000032511	-	95	60.145	Papio_anubis
FBgn0010412	RpS19a	84	54.198	ENSRNOG00000034203	AABR07064312.1	87	54.198	Rattus_norvegicus
FBgn0010412	RpS19a	88	62.319	ENSRNOG00000032482	AABR07029006.1	91	62.319	Rattus_norvegicus
FBgn0010412	RpS19a	88	64.493	ENSRNOG00000005430	AABR07040944.1	91	64.493	Rattus_norvegicus
FBgn0010412	RpS19a	87	55.556	ENSRBIG00000031897	-	93	55.556	Rhinopithecus_bieti
FBgn0010412	RpS19a	88	39.855	ENSSSCG00000033621	-	94	39.855	Sus_scrofa
FBgn0010412	RpS19a	88	40.141	ENSUMAG00000017013	-	95	40.141	Ursus_maritimus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000028	ribosomal small subunit assembly	21873635.	IBA	Process
GO:0002181	cytoplasmic translation	16889426.	IC	Process
GO:0002181	cytoplasmic translation	17927810.	TAS	Process
GO:0003735	structural constituent of ribosome	16889426.	HDA	Function
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	17927810.	TAS	Function
GO:0006412	translation	-	IEA	Process
GO:0022626	cytosolic ribosome	16889426.	HDA	Component
GO:0022627	cytosolic small ribosomal subunit	21873635.	IBA	Component
GO:0022627	cytosolic small ribosomal subunit	17927810.	TAS	Component