EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0010774 (Gene tree)
Gene ID: 44029
Gene Symbol: Ref1
Alias: -
Full Name: RNA and export factor binding protein 1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 2484 bases
Position: chr3R:7077904-7080387
Accession: FBgn0010774
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0081156	RRM_1	PF00076.22	4.1e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0081642	-	1328	-	FBpp0081156	266 (aa)	-	Q9V3E7

Gene Model

Click here to download FBgn0010774's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0010774's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0010774	Ref1	86	34.764	FBgn0032439	Ref2	87	34.764

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0010774	Ref1	98	39.925	ENSAPOG00000000183	-	96	42.007	Acanthochromis_polyacanthus
FBgn0010774	Ref1	74	36.364	ENSACIG00000020351	-	99	38.225	Amphilophus_citrinellus
FBgn0010774	Ref1	73	45.813	ENSAOCG00000014012	alyref	97	45.139	Amphiprion_ocellaris
FBgn0010774	Ref1	71	43.077	ENSAOCG00000019305	-	96	40.364	Amphiprion_ocellaris
FBgn0010774	Ref1	71	42.564	ENSAPEG00000013527	-	96	40.217	Amphiprion_percula
FBgn0010774	Ref1	73	45.813	ENSAPEG00000014603	alyref	97	45.139	Amphiprion_percula
FBgn0010774	Ref1	98	37.063	ENSATEG00000000382	-	96	42.182	Anabas_testudineus
FBgn0010774	Ref1	51	50.370	ENSAPLG00000014745	-	95	55.797	Anas_platyrhynchos
FBgn0010774	Ref1	67	36.279	ENSACLG00000010184	-	99	39.322	Astatotilapia_calliptera
FBgn0010774	Ref1	73	45.192	ENSACLG00000008432	alyref	97	45.833	Astatotilapia_calliptera
FBgn0010774	Ref1	71	44.444	ENSAMXG00000007359	alyref	98	44.746	Astyanax_mexicanus
FBgn0010774	Ref1	99	40.217	ENSCING00000013568	-	99	41.935	Ciona_intestinalis
FBgn0010774	Ref1	99	36.264	ENSCSAVG00000003324	-	99	43.273	Ciona_savignyi
FBgn0010774	Ref1	98	40.672	ENSCSEG00000017800	alyref	97	45.263	Cynoglossus_semilaevis
FBgn0010774	Ref1	73	45.411	ENSCVAG00000014869	alyref	97	47.350	Cyprinodon_variegatus
FBgn0010774	Ref1	100	37.184	ENSCVAG00000007789	-	99	40.511	Cyprinodon_variegatus
FBgn0010774	Ref1	65	45.312	ENSDARG00000077732	alyref	98	43.750	Danio_rerio
FBgn0010774	Ref1	98	38.007	ENSEBUG00000008253	alyref	93	42.701	Eptatretus_burgeri
FBgn0010774	Ref1	70	35.678	ENSEBUG00000006305	alyref	97	36.264	Eptatretus_burgeri
FBgn0010774	Ref1	98	39.655	ENSELUG00000008849	-	99	43.509	Esox_lucius
FBgn0010774	Ref1	73	48.020	ENSELUG00000017178	alyref	99	46.182	Esox_lucius
FBgn0010774	Ref1	57	52.318	ENSFALG00000011923	-	91	57.237	Ficedula_albicollis
FBgn0010774	Ref1	100	35.662	ENSFHEG00000004698	-	99	40.647	Fundulus_heteroclitus
FBgn0010774	Ref1	98	41.264	ENSFHEG00000019426	alyref	97	45.000	Fundulus_heteroclitus
FBgn0010774	Ref1	65	48.333	ENSGMOG00000013122	-	95	46.907	Gadus_morhua
FBgn0010774	Ref1	73	48.718	ENSGMOG00000009882	alyref	97	43.939	Gadus_morhua
FBgn0010774	Ref1	67	43.784	ENSGAFG00000007573	-	99	40.569	Gambusia_affinis
FBgn0010774	Ref1	65	50.276	ENSGAFG00000006014	alyref	97	44.681	Gambusia_affinis
FBgn0010774	Ref1	67	35.945	ENSHBUG00000001454	-	99	38.944	Haplochromis_burtoni
FBgn0010774	Ref1	73	45.192	ENSHBUG00000020196	alyref	97	45.833	Haplochromis_burtoni
FBgn0010774	Ref1	98	39.114	ENSHCOG00000012825	-	93	39.928	Hippocampus_comes
FBgn0010774	Ref1	98	42.336	ENSIPUG00000009469	alyref	96	47.535	Ictalurus_punctatus
FBgn0010774	Ref1	74	41.117	ENSSTOG00000016570	-	84	49.143	Ictidomys_tridecemlineatus
FBgn0010774	Ref1	65	50.276	ENSKMAG00000008912	alyref	97	44.444	Kryptolebias_marmoratus
FBgn0010774	Ref1	65	43.750	ENSKMAG00000006462	-	96	39.777	Kryptolebias_marmoratus
FBgn0010774	Ref1	98	40.672	ENSLBEG00000023118	alyref	87	44.928	Labrus_bergylta
FBgn0010774	Ref1	98	37.193	ENSLBEG00000012930	-	98	38.628	Labrus_bergylta
FBgn0010774	Ref1	70	41.414	ENSLBEG00000005387	-	99	38.567	Labrus_bergylta
FBgn0010774	Ref1	57	54.605	ENSLOCG00000013879	alyref	72	49.738	Lepisosteus_oculatus
FBgn0010774	Ref1	73	45.411	ENSMAMG00000003034	alyref	97	46.237	Mastacembelus_armatus
FBgn0010774	Ref1	98	36.803	ENSMAMG00000005464	-	96	38.376	Mastacembelus_armatus
FBgn0010774	Ref1	100	31.908	ENSMZEG00005012096	-	99	39.322	Maylandia_zebra
FBgn0010774	Ref1	73	45.192	ENSMZEG00005008639	alyref	97	45.833	Maylandia_zebra
FBgn0010774	Ref1	98	40.794	ENSMMOG00000012458	alyref	95	45.455	Mola_mola
FBgn0010774	Ref1	65	44.693	ENSMMOG00000007032	-	96	38.202	Mola_mola
FBgn0010774	Ref1	100	33.221	ENSMALG00000006054	-	99	36.806	Monopterus_albus
FBgn0010774	Ref1	99	41.219	ENSMLUG00000022467	-	99	43.728	Myotis_lucifugus
FBgn0010774	Ref1	98	39.711	ENSMLUG00000030671	-	97	43.382	Myotis_lucifugus
FBgn0010774	Ref1	99	39.326	ENSMLUG00000004098	-	99	45.522	Myotis_lucifugus
FBgn0010774	Ref1	73	44.776	ENSMLUG00000014372	-	98	43.571	Myotis_lucifugus
FBgn0010774	Ref1	99	39.051	ENSMLUG00000009247	-	99	42.701	Myotis_lucifugus
FBgn0010774	Ref1	99	40.876	ENSMLUG00000022178	-	99	46.182	Myotis_lucifugus
FBgn0010774	Ref1	67	47.802	ENSMLUG00000028605	-	99	43.214	Myotis_lucifugus
FBgn0010774	Ref1	98	45.000	ENSNGAG00000022014	-	97	49.624	Nannospalax_galili
FBgn0010774	Ref1	73	45.238	ENSNBRG00000001747	alyref	97	46.181	Neolamprologus_brichardi
FBgn0010774	Ref1	73	45.238	ENSONIG00000019434	alyref	97	45.862	Oreochromis_niloticus
FBgn0010774	Ref1	98	32.595	ENSORLG00000001620	-	87	34.277	Oryzias_latipes
FBgn0010774	Ref1	98	35.836	ENSORLG00020015673	-	96	40.876	Oryzias_latipes_hni
FBgn0010774	Ref1	65	47.778	ENSORLG00020011942	alyref	97	44.803	Oryzias_latipes_hni
FBgn0010774	Ref1	98	35.254	ENSORLG00015015143	-	96	40.569	Oryzias_latipes_hsok
FBgn0010774	Ref1	65	47.778	ENSORLG00015022664	alyref	97	46.097	Oryzias_latipes_hsok
FBgn0010774	Ref1	98	36.140	ENSOMEG00000007158	-	96	40.000	Oryzias_melastigma
FBgn0010774	Ref1	65	46.316	ENSOMEG00000019176	alyref	97	44.523	Oryzias_melastigma
FBgn0010774	Ref1	73	49.741	ENSPPAG00000036403	-	70	51.531	Pan_paniscus
FBgn0010774	Ref1	65	52.601	ENSPKIG00000007070	alyref	97	44.118	Paramormyrops_kingsleyae
FBgn0010774	Ref1	65	51.977	ENSPKIG00000006233	-	78	45.018	Paramormyrops_kingsleyae
FBgn0010774	Ref1	70	39.062	ENSPMGG00000012994	-	99	42.708	Periophthalmus_magnuspinnatus
FBgn0010774	Ref1	65	49.721	ENSPMGG00000016600	alyref	89	45.652	Periophthalmus_magnuspinnatus
FBgn0010774	Ref1	98	41.729	ENSPEMG00000016628	-	97	44.853	Peromyscus_maniculatus_bairdii
FBgn0010774	Ref1	65	49.444	ENSPFOG00000022825	alyref	96	43.617	Poecilia_formosa
FBgn0010774	Ref1	67	42.553	ENSPFOG00000017094	-	99	40.636	Poecilia_formosa
FBgn0010774	Ref1	65	49.444	ENSPLAG00000006948	alyref	97	43.972	Poecilia_latipinna
FBgn0010774	Ref1	67	42.553	ENSPLAG00000014380	-	99	40.636	Poecilia_latipinna
FBgn0010774	Ref1	65	49.444	ENSPMEG00000003547	alyref	97	43.617	Poecilia_mexicana
FBgn0010774	Ref1	67	42.553	ENSPMEG00000023039	-	99	40.636	Poecilia_mexicana
FBgn0010774	Ref1	65	49.444	ENSPREG00000015795	alyref	97	44.326	Poecilia_reticulata
FBgn0010774	Ref1	66	44.385	ENSPREG00000003649	-	99	40.794	Poecilia_reticulata
FBgn0010774	Ref1	98	30.640	ENSPNYG00000002879	-	96	39.427	Pundamilia_nyererei
FBgn0010774	Ref1	73	45.192	ENSPNYG00000017498	alyref	97	45.833	Pundamilia_nyererei
FBgn0010774	Ref1	98	43.820	ENSPNAG00000002531	alyref	97	46.739	Pygocentrus_nattereri
FBgn0010774	Ref1	65	52.000	ENSSBOG00000030924	-	77	53.714	Saimiri_boliviensis_boliviensis
FBgn0010774	Ref1	74	42.929	ENSSHAG00000000609	-	97	40.977	Sarcophilus_harrisii
FBgn0010774	Ref1	98	38.951	ENSSHAG00000012866	-	97	39.630	Sarcophilus_harrisii
FBgn0010774	Ref1	75	46.377	ENSSFOG00015003678	alyref	89	48.077	Scleropages_formosus
FBgn0010774	Ref1	72	45.729	ENSSFOG00015003923	alyref	71	48.515	Scleropages_formosus
FBgn0010774	Ref1	65	43.316	ENSSMAG00000011169	-	97	42.857	Scophthalmus_maximus
FBgn0010774	Ref1	73	46.305	ENSSDUG00000016158	alyref	97	44.912	Seriola_dumerili
FBgn0010774	Ref1	73	46.305	ENSSLDG00000017803	alyref	97	45.263	Seriola_lalandi_dorsalis
FBgn0010774	Ref1	98	34.948	ENSSPAG00000017028	-	94	40.364	Stegastes_partitus
FBgn0010774	Ref1	98	38.202	ENSTRUG00000003051	-	99	38.732	Takifugu_rubripes
FBgn0010774	Ref1	99	38.662	ENSTNIG00000014136	-	99	38.662	Tetraodon_nigroviridis
FBgn0010774	Ref1	98	40.959	ENSTNIG00000011595	alyref	97	43.273	Tetraodon_nigroviridis
FBgn0010774	Ref1	65	51.744	ENSVVUG00000000272	-	77	54.444	Vulpes_vulpes
FBgn0010774	Ref1	65	49.724	ENSXCOG00000018047	alyref	96	44.681	Xiphophorus_couchianus
FBgn0010774	Ref1	65	49.724	ENSXMAG00000012218	alyref	96	44.681	Xiphophorus_maculatus
FBgn0010774	Ref1	100	36.232	ENSXMAG00000018086	-	99	41.241	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000346	transcription export complex	-	ISS	Component
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	27514026.	IDA	Component
GO:0005654	nucleoplasm	16598038.	IDA	Component
GO:0031965	nuclear membrane	16598038.	IDA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component