EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0011640 (Gene tree)
Gene ID: 38811
Gene Symbol: lark
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 2628 bases
Position: chr3L:7339266-7341893
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0076552	zf-CCHC	PF00098.23	1.2e-06	1	1
FBpp0076553	zf-CCHC	PF00098.23	1.2e-06	1	1
FBpp0076554	zf-CCHC	PF00098.23	1.2e-06	1	1
FBpp0076555	zf-CCHC	PF00098.23	1.2e-06	1	1
FBpp0076556	zf-CCHC	PF00098.23	1.2e-06	1	1
FBpp0076552	RRM_1	PF00076.22	2.6e-29	1	2
FBpp0076552	RRM_1	PF00076.22	2.6e-29	2	2
FBpp0076553	RRM_1	PF00076.22	2.6e-29	1	2
FBpp0076553	RRM_1	PF00076.22	2.6e-29	2	2
FBpp0076554	RRM_1	PF00076.22	2.6e-29	1	2
FBpp0076554	RRM_1	PF00076.22	2.6e-29	2	2
FBpp0076555	RRM_1	PF00076.22	2.6e-29	1	2
FBpp0076555	RRM_1	PF00076.22	2.6e-29	2	2
FBpp0076556	RRM_1	PF00076.22	2.6e-29	1	2
FBpp0076556	RRM_1	PF00076.22	2.6e-29	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0076844	-	1758	-	FBpp0076555	352 (aa)	-	Q94901
FBtr0076845	-	2087	-	FBpp0076556	352 (aa)	-	Q94901
FBtr0076841	-	1837	-	FBpp0076552	352 (aa)	-	Q94901
FBtr0076842	-	1650	-	FBpp0076553	352 (aa)	-	Q94901
FBtr0076843	-	1784	-	FBpp0076554	352 (aa)	-	Q94901

Gene Model

Click here to download FBgn0011640's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0011640's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000278	mitotic cell cycle	18463163.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	25211129.	IDA	Function
GO:0003723	RNA binding	15452872.	NAS	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	9491990.11560900.	IDA	Component
GO:0005737	cytoplasm	9491990.	IDA	Component
GO:0007303	cytoplasmic transport, nurse cell to oocyte	15452872.	IMP	Process
GO:0007562	eclosion	12626480.	TAS	Process
GO:0007623	circadian rhythm	8307324.	IMP	Process
GO:0007623	circadian rhythm	11715043.	NAS	Process
GO:0008062	eclosion rhythm	8307324.9120432.	IMP	Process
GO:0008062	eclosion rhythm	11715043.	NAS	Process
GO:0008062	eclosion rhythm	12015613.12486701.	TAS	Process
GO:0008104	protein localization	15452872.	IMP	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0009792	embryo development ending in birth or egg hatching	8307324.	IMP	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0030036	actin cytoskeleton organization	15452872.	IMP	Process
GO:0040011	locomotion	12626480.	TAS	Process
GO:0042752	regulation of circadian rhythm	25211129.	IGI	Process
GO:0042752	regulation of circadian rhythm	25211129.	IMP	Process
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0045475	locomotor rhythm	22653887.	IMP	Process
GO:0045475	locomotor rhythm	12015613.	TAS	Process
GO:0045804	negative regulation of eclosion	8307324.9120432.	IMP	Process
GO:0045995	regulation of embryonic development	8307324.	IMP	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:2000767	positive regulation of cytoplasmic translation	25211129.	IMP	Process