EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0011666 (Gene tree)
Gene ID: 43087
Gene Symbol: msi
Alias: -
Full Name: musashi
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 92306 bases
Position: chr3R:25516118-25608423
Accession: FBgn0011666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0305821	RRM_1	PF00076.22	8.8e-31	1	2
FBpp0305821	RRM_1	PF00076.22	8.8e-31	2	2
FBpp0293749	RRM_1	PF00076.22	1e-30	1	2
FBpp0293749	RRM_1	PF00076.22	1e-30	2	2
FBpp0084256	RRM_1	PF00076.22	1.1e-30	1	2
FBpp0084256	RRM_1	PF00076.22	1.1e-30	2	2
FBpp0305819	RRM_1	PF00076.22	1.1e-30	1	2
FBpp0305819	RRM_1	PF00076.22	1.1e-30	2	2
FBpp0084255	RRM_1	PF00076.22	1.1e-30	1	2
FBpp0084255	RRM_1	PF00076.22	1.1e-30	2	2
FBpp0293748	RRM_1	PF00076.22	1.1e-30	1	2
FBpp0293748	RRM_1	PF00076.22	1.1e-30	2	2
FBpp0305820	RRM_1	PF00076.22	1.1e-30	1	2
FBpp0305820	RRM_1	PF00076.22	1.1e-30	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0333664	-	10175	-	FBpp0305820	634 (aa)	-	Q8IMS8
FBtr0333665	-	2676	-	FBpp0305821	567 (aa)	-	A0A0B4KGY9
FBtr0333663	-	2840	-	FBpp0305819	618 (aa)	-	A0A0B4KHV4
FBtr0305218	-	2888	-	FBpp0293748	634 (aa)	-	D0Z767
FBtr0305219	-	2801	-	FBpp0293749	605 (aa)	-	A0A0B4K6K8
FBtr0084881	-	2806	-	FBpp0084255	634 (aa)	-	Q8IMS8
FBtr0084882	-	3984	-	FBpp0084256	606 (aa)	-	Q7JN15

Gene Model

Click here to download FBgn0011666's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0011666's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000900	translation repressor activity, mRNA regulatory element binding	15018932.	TAS	Function
GO:0001709	cell fate determination	15018932.	TAS	Process
GO:0001752	compound eye photoreceptor fate commitment	10495274.	IMP	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	8043282.	ISM	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003729	mRNA binding	15018932.	TAS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	8043282.10495274.	IDA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0006417	regulation of translation	12414187.	TAS	Process
GO:0010629	negative regulation of gene expression	10495274.	IMP	Process
GO:0017148	negative regulation of translation	11333984.	IMP	Process
GO:0017148	negative regulation of translation	15018932.	TAS	Process
GO:0019827	stem cell population maintenance	16717192.	IMP	Process
GO:0022416	chaeta development	8043282.	IMP	Process
GO:0042078	germ-line stem cell division	16717192.	IMP	Process
GO:0045182	translation regulator activity	12414187.	TAS	Function
GO:0071456	cellular response to hypoxia	18653470.	IMP	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component