EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0011725 (Gene tree)
Gene ID: 42880
Gene Symbol: twin
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 25073 bases
Position: chr3R:24196893-24221965
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0083955	Exo_endo_phos	PF03372.23	1.6e-20	1	1
FBpp0083952	Exo_endo_phos	PF03372.23	6.3e-20	1	1
FBpp0083951	Exo_endo_phos	PF03372.23	6.5e-20	1	1
FBpp0083953	Exo_endo_phos	PF03372.23	6.5e-20	1	1
FBpp0083956	Exo_endo_phos	PF03372.23	6.5e-20	1	1
FBpp0083954	Exo_endo_phos	PF03372.23	7.1e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0084571	-	2690	-	FBpp0083956	552 (aa)	-	Q7K112
FBtr0084567	-	2621	-	FBpp0083952	545 (aa)	-	Q8MTZ5
FBtr0084566	-	2702	-	FBpp0083951	552 (aa)	-	Q7K112
FBtr0084570	-	2950	-	FBpp0083955	358 (aa)	-	Q8IMX0
FBtr0084568	-	3548	-	FBpp0083953	552 (aa)	-	Q7K112
FBtr0084569	-	2586	-	FBpp0083954	567 (aa)	-	Q7K112

Gene Model

Click here to download FBgn0011725's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0011725's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0011725	twin	98	52.909	WBGene00000376	ccr-4	91	53.117	Caenorhabditis_elegans
FBgn0011725	twin	98	54.152	ENSCING00000006911	-	100	53.982	Ciona_intestinalis
FBgn0011725	twin	61	45.798	ENSCSAVG00000004307	-	78	45.455	Ciona_savignyi
FBgn0011725	twin	96	38.109	YAL021C	CCR4	59	37.548	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	15703281.17050620.	IMP	Process
GO:0004535	poly(A)-specific ribonuclease activity	15215893.	IDA	Function
GO:0005515	protein binding	21981923.30279526.	IPI	Function
GO:0005737	cytoplasm	15215893.24286029.	IDA	Component
GO:0005829	cytosol	25294944.	HDA	Component
GO:0006402	mRNA catabolic process	23303381.	IDA	Process
GO:0017148	negative regulation of translation	23303381.	IDA	Process
GO:0030014	CCR4-NOT complex	15215893.20504953.	IDA	Component
GO:0048132	female germ-line stem cell asymmetric division	24286029.	IMP	Process
GO:0048477	oogenesis	15703281.	IMP	Process