EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0011824 (Gene tree)
Gene ID: 37397
Gene Symbol: CG4038
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 1348 bases
Position: chr2R:21095958-21097305
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0071562	Gar1	PF04410.14	2e-31	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0071639	-	957	-	FBpp0071562	237 (aa)	-	Q7KVQ0

Gene Model

Click here to download FBgn0011824's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0011824's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0011824	CG4038	73	58.772	ENSBTAG00000000748	GAR1	50	59.615	Bos_taurus
FBgn0011824	CG4038	79	53.543	ENSCHIG00000016026	-	50	59.615	Capra_hircus
FBgn0011824	CG4038	68	52.101	ENSCHIG00000011049	-	55	50.926	Capra_hircus
FBgn0011824	CG4038	59	51.064	ENSTSYG00000026632	-	53	54.808	Carlito_syrichta
FBgn0011824	CG4038	84	56.552	ENSCATG00000021854	GAR1	87	53.947	Cercocebus_atys
FBgn0011824	CG4038	76	56.552	ENSCSAG00000003922	GAR1	87	53.947	Chlorocebus_sabaeus
FBgn0011824	CG4038	77	52.419	ENSCSAVG00000006355	-	54	52.381	Ciona_savignyi
FBgn0011824	CG4038	54	54.962	ENSCGRG00000010165	-	88	53.982	Cricetulus_griseus_crigri
FBgn0011824	CG4038	71	50.735	ENSEBUG00000011178	gar1	92	48.485	Eptatretus_burgeri
FBgn0011824	CG4038	63	58.772	ENSECAG00000013624	GAR1	53	59.615	Equus_caballus
FBgn0011824	CG4038	95	59.477	ENSGALG00000020164	GAR1	50	57.273	Gallus_gallus
FBgn0011824	CG4038	70	55.652	ENSHGLG00000000493	GAR1	75	57.895	Heterocephalus_glaber_female
FBgn0011824	CG4038	75	48.485	ENSMFAG00000003572	-	82	48.485	Macaca_fascicularis
FBgn0011824	CG4038	84	57.241	ENSMLEG00000002496	GAR1	57	50.000	Mandrillus_leucophaeus
FBgn0011824	CG4038	75	54.676	ENSMMOG00000004156	gar1	51	60.577	Mola_mola
FBgn0011824	CG4038	65	55.752	ENSMODG00000005897	GAR1	85	53.793	Monodelphis_domestica
FBgn0011824	CG4038	79	54.088	MGP_CAROLIEiJ_G0025627	Gar1	86	58.896	Mus_caroli
FBgn0011824	CG4038	73	58.772	ENSNGAG00000008268	Gar1	74	57.895	Nannospalax_galili
FBgn0011824	CG4038	84	57.241	ENSPTRG00000016364	GAR1	87	53.947	Pan_troglodytes
FBgn0011824	CG4038	61	53.061	ENSPCIG00000018912	GAR1	65	51.389	Phascolarctos_cinereus
FBgn0011824	CG4038	68	60.714	ENSRBIG00000019547	GAR1	69	60.345	Rhinopithecus_bieti
FBgn0011824	CG4038	73	46.212	ENSRBIG00000042411	-	81	47.328	Rhinopithecus_bieti
FBgn0011824	CG4038	84	56.552	ENSRROG00000028454	GAR1	87	53.947	Rhinopithecus_roxellana
FBgn0011824	CG4038	84	44.079	ENSRROG00000044348	-	84	45.270	Rhinopithecus_roxellana
FBgn0011824	CG4038	70	47.934	YHR089C	-	77	48.062	Saccharomyces_cerevisiae
FBgn0011824	CG4038	70	57.692	ENSSSCG00000009137	GAR1	51	59.615	Sus_scrofa
FBgn0011824	CG4038	64	49.673	ENSTGUG00000004185	GAR1	67	56.122	Taeniopygia_guttata
FBgn0011824	CG4038	73	52.027	ENSTRUG00000020580	gar1	50	57.692	Takifugu_rubripes
FBgn0011824	CG4038	72	54.472	ENSVVUG00000017612	GAR1	54	59.615	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000454	snoRNA guided rRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0005654	nucleoplasm	25294944.	HDA	Component
GO:0005730	nucleolus	25294944.	HDA	Component
GO:0005732	small nucleolar ribonucleoprotein complex	-	ISS	Component
GO:0031118	rRNA pseudouridine synthesis	-	ISS	Process
GO:0031429	box H/ACA snoRNP complex	21873635.	IBA	Component
GO:0034513	box H/ACA snoRNA binding	21873635.	IBA	Function