EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0014024 (Gene tree)
Gene ID: 31448
Gene Symbol: Rnp4F
Alias: -
Full Name: RNA-binding protein 4F
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 3769 bases
Position: chrX:5318928-5322696
Accession: FBgn0014024
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0070720	Lsm_interact	PF05391.11	1.7e-08	1	1
FBpp0089396	Lsm_interact	PF05391.11	1.7e-08	1	1
FBpp0111789	Lsm_interact	PF05391.11	1.7e-08	1	1
FBpp0309418	Lsm_interact	PF05391.11	1.7e-08	1	1
FBpp0070720	RRM_1	PF00076.22	8.6e-19	1	1
FBpp0089396	RRM_1	PF00076.22	8.6e-19	1	1
FBpp0111789	RRM_1	PF00076.22	8.6e-19	1	1
FBpp0309418	RRM_1	PF00076.22	8.6e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0070752	-	3323	-	FBpp0070720	941 (aa)	-	Q9W4D2
FBtr0070753	-	3242	-	FBpp0089396	941 (aa)	-	Q9W4D2
FBtr0340477	-	3116	-	FBpp0309418	941 (aa)	-	Q9W4D2
FBtr0112876	-	3146	-	FBpp0111789	941 (aa)	-	Q9W4D2

Gene Model

Click here to download FBgn0014024's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0014024's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0014024	Rnp4F	51	38.971	ENSG00000075856	SART3	63	46.667	Homo_sapiens
FBgn0014024	Rnp4F	50	38.931	ENSAMEG00000016374	SART3	59	38.931	Ailuropoda_melanoleuca
FBgn0014024	Rnp4F	51	40.157	ENSACAG00000001176	SART3	61	40.157	Anolis_carolinensis
FBgn0014024	Rnp4F	50	41.071	ENSANAG00000025967	SART3	57	41.071	Aotus_nancymaae
FBgn0014024	Rnp4F	51	40.146	ENSAMXG00000019143	sart3	60	40.146	Astyanax_mexicanus
FBgn0014024	Rnp4F	50	41.964	ENSBTAG00000031846	SART3	57	41.964	Bos_taurus
FBgn0014024	Rnp4F	51	39.706	ENSCJAG00000015330	SART3	58	39.706	Callithrix_jacchus
FBgn0014024	Rnp4F	53	36.879	ENSCAFG00000011352	SART3	53	36.879	Canis_familiaris
FBgn0014024	Rnp4F	53	35.443	ENSCAFG00020022271	SART3	62	35.443	Canis_lupus_dingo
FBgn0014024	Rnp4F	51	37.778	ENSCHIG00000021385	SART3	58	37.778	Capra_hircus
FBgn0014024	Rnp4F	51	39.706	ENSTSYG00000013923	SART3	59	39.706	Carlito_syrichta
FBgn0014024	Rnp4F	50	40.909	ENSCAPG00000013404	SART3	62	40.909	Cavia_aperea
FBgn0014024	Rnp4F	50	40.909	ENSCPOG00000010969	SART3	56	40.909	Cavia_porcellus
FBgn0014024	Rnp4F	50	41.071	ENSCCAG00000023667	SART3	57	41.071	Cebus_capucinus
FBgn0014024	Rnp4F	51	38.971	ENSCATG00000041537	SART3	58	38.971	Cercocebus_atys
FBgn0014024	Rnp4F	50	37.405	ENSCLAG00000011727	SART3	59	37.405	Chinchilla_lanigera
FBgn0014024	Rnp4F	51	38.971	ENSCSAG00000002880	SART3	60	38.971	Chlorocebus_sabaeus
FBgn0014024	Rnp4F	51	40.541	ENSCPBG00000006699	SART3	64	39.474	Chrysemys_picta_bellii
FBgn0014024	Rnp4F	51	38.971	ENSCGRG00001020554	Sart3	59	38.971	Cricetulus_griseus_chok1gshd
FBgn0014024	Rnp4F	51	38.971	ENSCGRG00000005968	Sart3	70	38.971	Cricetulus_griseus_crigri
FBgn0014024	Rnp4F	52	40.580	ENSCVAG00000022898	sart3	60	40.580	Cyprinodon_variegatus
FBgn0014024	Rnp4F	53	36.709	ENSDARG00000008032	sart3	61	36.709	Danio_rerio
FBgn0014024	Rnp4F	52	36.029	ENSDORG00000014360	Sart3	63	36.765	Dipodomys_ordii
FBgn0014024	Rnp4F	53	37.589	ENSEASG00005014500	SART3	62	36.774	Equus_asinus_asinus
FBgn0014024	Rnp4F	53	37.589	ENSECAG00000000314	SART3	62	36.774	Equus_caballus
FBgn0014024	Rnp4F	51	39.695	ENSEEUG00000002954	SART3	60	39.695	Erinaceus_europaeus
FBgn0014024	Rnp4F	50	43.750	ENSFCAG00000014041	SART3	57	43.750	Felis_catus
FBgn0014024	Rnp4F	51	37.594	ENSFALG00000008894	SART3	68	37.594	Ficedula_albicollis
FBgn0014024	Rnp4F	53	36.129	ENSFDAG00000014878	SART3	61	36.129	Fukomys_damarensis
FBgn0014024	Rnp4F	51	38.889	ENSFHEG00000015715	sart3	67	38.889	Fundulus_heteroclitus
FBgn0014024	Rnp4F	51	44.444	ENSGALG00000039472	SART3	67	37.405	Gallus_gallus
FBgn0014024	Rnp4F	51	38.750	ENSGAFG00000018055	sart3	62	38.750	Gambusia_affinis
FBgn0014024	Rnp4F	51	37.405	ENSGAGG00000016519	SART3	64	37.405	Gopherus_agassizii
FBgn0014024	Rnp4F	51	38.971	ENSGGOG00000011562	SART3	60	38.971	Gorilla_gorilla
FBgn0014024	Rnp4F	52	38.462	ENSHGLG00000011579	SART3	58	38.462	Heterocephalus_glaber_female
FBgn0014024	Rnp4F	52	38.462	ENSHGLG00100013263	SART3	60	38.462	Heterocephalus_glaber_male
FBgn0014024	Rnp4F	51	38.346	ENSIPUG00000021151	sart3	60	38.346	Ictalurus_punctatus
FBgn0014024	Rnp4F	52	37.692	ENSSTOG00000002376	SART3	58	37.692	Ictidomys_tridecemlineatus
FBgn0014024	Rnp4F	51	45.614	ENSLOCG00000004710	sart3	55	45.614	Lepisosteus_oculatus
FBgn0014024	Rnp4F	53	37.342	ENSLAFG00000007167	SART3	62	37.342	Loxodonta_africana
FBgn0014024	Rnp4F	51	38.971	ENSMFAG00000039887	SART3	58	38.971	Macaca_fascicularis
FBgn0014024	Rnp4F	50	41.739	ENSMMUG00000017124	SART3	60	41.739	Macaca_mulatta
FBgn0014024	Rnp4F	51	38.971	ENSMNEG00000011093	SART3	58	38.971	Macaca_nemestrina
FBgn0014024	Rnp4F	51	38.971	ENSMLEG00000034251	SART3	58	38.971	Mandrillus_leucophaeus
FBgn0014024	Rnp4F	51	40.580	ENSMAMG00000016195	sart3	62	37.975	Mastacembelus_armatus
FBgn0014024	Rnp4F	51	37.778	ENSMAUG00000012434	Sart3	62	37.778	Mesocricetus_auratus
FBgn0014024	Rnp4F	53	35.256	ENSMICG00000013052	SART3	61	35.256	Microcebus_murinus
FBgn0014024	Rnp4F	51	39.706	ENSMOCG00000004078	Sart3	59	39.706	Microtus_ochrogaster
FBgn0014024	Rnp4F	51	42.029	ENSMALG00000014549	sart3	59	39.873	Monopterus_albus
FBgn0014024	Rnp4F	51	39.706	MGP_CAROLIEiJ_G0027580	Sart3	59	39.706	Mus_caroli
FBgn0014024	Rnp4F	51	39.706	ENSMUSG00000018974	Sart3	59	39.706	Mus_musculus
FBgn0014024	Rnp4F	51	39.706	MGP_PahariEiJ_G0024162	Sart3	59	39.706	Mus_pahari
FBgn0014024	Rnp4F	52	39.706	MGP_SPRETEiJ_G0028578	Sart3	59	39.706	Mus_spretus
FBgn0014024	Rnp4F	53	36.076	ENSMPUG00000003402	SART3	56	36.076	Mustela_putorius_furo
FBgn0014024	Rnp4F	53	38.961	ENSNGAG00000014773	Sart3	61	38.961	Nannospalax_galili
FBgn0014024	Rnp4F	52	39.416	ENSNLEG00000006767	SART3	58	39.416	Nomascus_leucogenys
FBgn0014024	Rnp4F	52	34.307	ENSOPRG00000015817	SART3	61	34.307	Ochotona_princeps
FBgn0014024	Rnp4F	50	36.641	ENSODEG00000008547	SART3	61	34.194	Octodon_degus
FBgn0014024	Rnp4F	52	36.364	ENSOCUG00000016285	SART3	56	42.308	Oryctolagus_cuniculus
FBgn0014024	Rnp4F	53	35.294	ENSOGAG00000000932	SART3	61	35.294	Otolemur_garnettii
FBgn0014024	Rnp4F	51	38.519	ENSOARG00000018082	SART3	60	38.519	Ovis_aries
FBgn0014024	Rnp4F	51	38.971	ENSPPAG00000041812	SART3	58	38.971	Pan_paniscus
FBgn0014024	Rnp4F	53	37.762	ENSPPRG00000001579	SART3	60	37.762	Panthera_pardus
FBgn0014024	Rnp4F	50	43.750	ENSPTIG00000021928	SART3	57	43.750	Panthera_tigris_altaica
FBgn0014024	Rnp4F	51	38.971	ENSPTRG00000005404	SART3	58	38.971	Pan_troglodytes
FBgn0014024	Rnp4F	51	38.971	ENSPANG00000024915	SART3	58	38.971	Papio_anubis
FBgn0014024	Rnp4F	51	38.168	ENSPEMG00000020811	-	62	38.168	Peromyscus_maniculatus_bairdii
FBgn0014024	Rnp4F	51	38.971	ENSPPYG00000004919	SART3	59	39.416	Pongo_abelii
FBgn0014024	Rnp4F	53	35.948	ENSPCOG00000014016	SART3	65	35.948	Propithecus_coquereli
FBgn0014024	Rnp4F	51	40.458	ENSPNAG00000001851	sart3	60	40.458	Pygocentrus_nattereri
FBgn0014024	Rnp4F	53	37.975	ENSRNOG00000000702	Sart3	62	37.736	Rattus_norvegicus
FBgn0014024	Rnp4F	51	39.706	ENSRBIG00000034143	SART3	60	39.706	Rhinopithecus_bieti
FBgn0014024	Rnp4F	51	39.706	ENSRROG00000003629	SART3	60	39.706	Rhinopithecus_roxellana
FBgn0014024	Rnp4F	51	38.971	ENSSBOG00000033093	SART3	62	38.971	Saimiri_boliviensis_boliviensis
FBgn0014024	Rnp4F	51	45.556	ENSSSCG00000009946	SART3	61	45.556	Sus_scrofa
FBgn0014024	Rnp4F	51	37.879	ENSTGUG00000006905	SART3	66	37.879	Taeniopygia_guttata
FBgn0014024	Rnp4F	51	39.130	ENSTRUG00000014173	sart3	61	38.065	Takifugu_rubripes
FBgn0014024	Rnp4F	54	38.854	ENSTNIG00000015867	sart3	68	38.854	Tetraodon_nigroviridis
FBgn0014024	Rnp4F	51	38.235	ENSTTRG00000003993	SART3	60	38.235	Tursiops_truncatus
FBgn0014024	Rnp4F	50	38.931	ENSUAMG00000023906	SART3	59	38.931	Ursus_americanus
FBgn0014024	Rnp4F	50	38.931	ENSUMAG00000005844	SART3	64	38.931	Ursus_maritimus
FBgn0014024	Rnp4F	53	36.879	ENSVVUG00000008216	SART3	62	36.879	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0007417	central nervous system development	17582706.	IMP	Process
GO:0008380	RNA splicing	21873635.	IBA	Process
GO:0061574	ASAP complex	21873635.	IBA	Component