EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0014870 (Gene tree)
Gene ID: 36889
Gene Symbol: Psi
Alias: -
Full Name: P-element somatic inhibitor
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 6394 bases
Position: chr2R:16861321-16867714
Accession: FBgn0014870
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0086221	KH_1	PF00013.29	4.1e-52	1	4
FBpp0086221	KH_1	PF00013.29	4.1e-52	2	4
FBpp0086221	KH_1	PF00013.29	4.1e-52	3	4
FBpp0086221	KH_1	PF00013.29	4.1e-52	4	4
FBpp0086220	KH_1	PF00013.29	6.6e-52	1	4
FBpp0086220	KH_1	PF00013.29	6.6e-52	2	4
FBpp0086220	KH_1	PF00013.29	6.6e-52	3	4
FBpp0086220	KH_1	PF00013.29	6.6e-52	4	4
FBpp0086222	KH_1	PF00013.29	6.6e-52	1	4
FBpp0086222	KH_1	PF00013.29	6.6e-52	2	4
FBpp0086222	KH_1	PF00013.29	6.6e-52	3	4
FBpp0086222	KH_1	PF00013.29	6.6e-52	4	4
FBpp0086221	DUF1897	PF09005.10	2.7e-33	1	2
FBpp0086221	DUF1897	PF09005.10	2.7e-33	2	2
FBpp0086222	DUF1897	PF09005.10	3.4e-33	1	2
FBpp0086222	DUF1897	PF09005.10	3.4e-33	2	2
FBpp0086220	DUF1897	PF09005.10	3.4e-33	1	2
FBpp0086220	DUF1897	PF09005.10	3.4e-33	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0087073	-	5687	-	FBpp0086221	716 (aa)	-	A1ZAK9
FBtr0087072	-	3227	-	FBpp0086220	796 (aa)	-	A1ZAK7
FBtr0087074	-	3435	-	FBpp0086222	797 (aa)	-	A1ZAK7

Gene Model

Click here to download FBgn0014870's gene model file

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0014870	Psi	52	35.917	WBGene00007534	C12D8.1	92	31.208	Caenorhabditis_elegans
FBgn0014870	Psi	52	37.455	ENSCING00000009628	-	85	36.397	Ciona_intestinalis
FBgn0014870	Psi	67	37.634	ENSCSAVG00000003258	-	54	46.524	Ciona_savignyi
FBgn0014870	Psi	86	34.201	ENSCSAVG00000003294	-	97	33.096	Ciona_savignyi

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	11545738.	IMP	Process
GO:0003729	mRNA binding	7958851.	IDA	Function
GO:0005515	protein binding	15990112.	IPI	Function
GO:0005634	nucleus	7867926.	IDA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006397	mRNA processing	11782446.	IDA	Process
GO:0007283	spermatogenesis	11782446.	IMP	Process
GO:0048024	regulation of mRNA splicing, via spliceosome	15937219.	IMP	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	7958851.	IDA	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	11545738.	IMP	Process