EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0015075 (Gene tree)
Gene ID: 40457
Gene Symbol: Ddx1
Alias: -
Full Name: Dead-box-1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 2649 bases
Position: chr3L:22263369-22266017
Accession: FBgn0015075
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0078144	DEAD	PF00270.29	5.7e-60	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0078492	-	2470	-	FBpp0078144	727 (aa)	-	Q9VNV3

Gene Model

Click here to download FBgn0015075's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0015075's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0015075	Ddx1	57	49.153	FBgn0004419	me31B	90	49.153
FBgn0015075	Ddx1	54	40.625	FBgn0001565	Hlc	67	40.625
FBgn0015075	Ddx1	58	44.444	FBgn0010220	Dbp45A	66	44.444
FBgn0015075	Ddx1	53	46.296	FBgn0283442	vas	50	47.059
FBgn0015075	Ddx1	54	52.381	FBgn0032919	CG9253	67	52.381

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0015075	Ddx1	99	59.781	ENSG00000079785	DDX1	98	59.234	Homo_sapiens
FBgn0015075	Ddx1	99	59.781	ENSAPOG00000003166	ddx1	98	59.371	Acanthochromis_polyacanthus
FBgn0015075	Ddx1	99	59.589	ENSAMEG00000001071	DDX1	98	59.041	Ailuropoda_melanoleuca
FBgn0015075	Ddx1	87	58.814	ENSACIG00000017422	ddx1	97	59.438	Amphilophus_citrinellus
FBgn0015075	Ddx1	93	59.531	ENSAOCG00000015436	ddx1	97	59.091	Amphiprion_ocellaris
FBgn0015075	Ddx1	99	59.781	ENSAPEG00000007699	ddx1	98	59.371	Amphiprion_percula
FBgn0015075	Ddx1	95	61.119	ENSATEG00000003965	ddx1	97	60.399	Anabas_testudineus
FBgn0015075	Ddx1	99	59.864	ENSAPLG00000011093	DDX1	98	59.456	Anas_platyrhynchos
FBgn0015075	Ddx1	95	60.399	ENSACAG00000011036	DDX1	99	60.256	Anolis_carolinensis
FBgn0015075	Ddx1	99	59.644	ENSANAG00000037912	DDX1	98	59.097	Aotus_nancymaae
FBgn0015075	Ddx1	99	60.165	ENSACLG00000008850	ddx1	97	59.594	Astatotilapia_calliptera
FBgn0015075	Ddx1	99	58.413	ENSAMXG00000002100	ddx1	98	57.866	Astyanax_mexicanus
FBgn0015075	Ddx1	99	59.918	ENSBTAG00000009906	DDX1	98	59.371	Bos_taurus
FBgn0015075	Ddx1	99	46.785	WBGene00021938	Y55F3BR.1	98	46.512	Caenorhabditis_elegans
FBgn0015075	Ddx1	99	59.644	ENSCJAG00000007076	DDX1	98	59.097	Callithrix_jacchus
FBgn0015075	Ddx1	99	59.918	ENSCAFG00000003686	DDX1	98	59.371	Canis_familiaris
FBgn0015075	Ddx1	99	59.918	ENSCAFG00020026083	DDX1	98	59.371	Canis_lupus_dingo
FBgn0015075	Ddx1	99	60.055	ENSCHIG00000011046	DDX1	98	59.508	Capra_hircus
FBgn0015075	Ddx1	99	59.918	ENSTSYG00000002477	-	98	59.371	Carlito_syrichta
FBgn0015075	Ddx1	97	43.961	ENSTSYG00000037396	-	96	43.812	Carlito_syrichta
FBgn0015075	Ddx1	86	48.254	ENSCAPG00000008906	-	91	48.254	Cavia_aperea
FBgn0015075	Ddx1	86	59.936	ENSCPOG00000009816	-	92	59.936	Cavia_porcellus
FBgn0015075	Ddx1	69	58.449	ENSCPOG00000032467	-	99	57.654	Cavia_porcellus
FBgn0015075	Ddx1	99	59.508	ENSCCAG00000030085	DDX1	98	58.960	Cebus_capucinus
FBgn0015075	Ddx1	99	59.781	ENSCATG00000033924	DDX1	98	59.234	Cercocebus_atys
FBgn0015075	Ddx1	99	60.055	ENSCLAG00000005434	DDX1	98	59.508	Chinchilla_lanigera
FBgn0015075	Ddx1	99	59.781	ENSCSAG00000007883	DDX1	98	59.234	Chlorocebus_sabaeus
FBgn0015075	Ddx1	62	77.083	ENSCHOG00000002171	DDX1	62	77.083	Choloepus_hoffmanni
FBgn0015075	Ddx1	99	56.414	ENSCPBG00000013330	DDX1	100	59.200	Chrysemys_picta_bellii
FBgn0015075	Ddx1	99	56.575	ENSCING00000001176	-	98	56.712	Ciona_intestinalis
FBgn0015075	Ddx1	99	55.021	ENSCSAVG00000003028	-	99	54.545	Ciona_savignyi
FBgn0015075	Ddx1	99	59.781	ENSCANG00000031530	DDX1	98	59.234	Colobus_angolensis_palliatus
FBgn0015075	Ddx1	99	59.918	ENSCGRG00001013025	Ddx1	98	59.371	Cricetulus_griseus_chok1gshd
FBgn0015075	Ddx1	99	59.918	ENSCGRG00000000676	Ddx1	98	59.371	Cricetulus_griseus_crigri
FBgn0015075	Ddx1	98	59.724	ENSCSEG00000002630	ddx1	98	59.310	Cynoglossus_semilaevis
FBgn0015075	Ddx1	98	60.276	ENSCVAG00000020927	ddx1	98	60.138	Cyprinodon_variegatus
FBgn0015075	Ddx1	99	58.687	ENSDARG00000032117	ddx1	98	58.140	Danio_rerio
FBgn0015075	Ddx1	99	60.192	ENSDNOG00000006905	DDX1	98	59.644	Dasypus_novemcinctus
FBgn0015075	Ddx1	99	59.781	ENSDORG00000012847	Ddx1	98	59.234	Dipodomys_ordii
FBgn0015075	Ddx1	99	54.172	ENSETEG00000014259	DDX1	98	54.172	Echinops_telfairi
FBgn0015075	Ddx1	60	60.899	ENSEBUG00000009800	-	94	60.899	Eptatretus_burgeri
FBgn0015075	Ddx1	99	59.508	ENSEASG00005009335	DDX1	90	58.960	Equus_asinus_asinus
FBgn0015075	Ddx1	93	59.012	ENSECAG00000016396	DDX1	98	58.430	Equus_caballus
FBgn0015075	Ddx1	87	57.803	ENSEEUG00000001606	DDX1	87	57.803	Erinaceus_europaeus
FBgn0015075	Ddx1	99	58.254	ENSELUG00000006743	ddx1	98	57.981	Esox_lucius
FBgn0015075	Ddx1	99	59.918	ENSFCAG00000004680	DDX1	98	59.371	Felis_catus
FBgn0015075	Ddx1	99	60.876	ENSFALG00000008696	DDX1	98	60.328	Ficedula_albicollis
FBgn0015075	Ddx1	99	60.055	ENSFDAG00000021305	DDX1	98	59.508	Fukomys_damarensis
FBgn0015075	Ddx1	99	59.918	ENSFHEG00000008444	ddx1	98	59.508	Fundulus_heteroclitus
FBgn0015075	Ddx1	99	58.719	ENSGMOG00000011300	ddx1	98	58.038	Gadus_morhua
FBgn0015075	Ddx1	99	60.328	ENSGALG00000016461	DDX1	98	59.781	Gallus_gallus
FBgn0015075	Ddx1	99	60.055	ENSGAFG00000004706	ddx1	98	59.644	Gambusia_affinis
FBgn0015075	Ddx1	99	59.371	ENSGACG00000011162	ddx1	98	58.960	Gasterosteus_aculeatus
FBgn0015075	Ddx1	99	59.781	ENSGAGG00000021020	DDX1	98	59.234	Gopherus_agassizii
FBgn0015075	Ddx1	99	59.781	ENSGGOG00000012482	DDX1	98	59.234	Gorilla_gorilla
FBgn0015075	Ddx1	99	60.055	ENSHBUG00000014069	ddx1	98	59.644	Haplochromis_burtoni
FBgn0015075	Ddx1	99	59.918	ENSHGLG00000000801	DDX1	98	59.371	Heterocephalus_glaber_female
FBgn0015075	Ddx1	98	59.862	ENSHGLG00100000711	DDX1	98	59.310	Heterocephalus_glaber_male
FBgn0015075	Ddx1	99	59.644	ENSHCOG00000011492	ddx1	94	59.097	Hippocampus_comes
FBgn0015075	Ddx1	99	58.197	ENSIPUG00000003494	ddx1	98	57.650	Ictalurus_punctatus
FBgn0015075	Ddx1	99	59.534	ENSSTOG00000003977	DDX1	98	59.172	Ictidomys_tridecemlineatus
FBgn0015075	Ddx1	88	56.037	ENSJJAG00000013315	Ddx1	98	56.211	Jaculus_jaculus
FBgn0015075	Ddx1	99	60.192	ENSKMAG00000011340	ddx1	98	59.781	Kryptolebias_marmoratus
FBgn0015075	Ddx1	87	57.321	ENSLBEG00000008692	ddx1	97	57.321	Labrus_bergylta
FBgn0015075	Ddx1	99	59.781	ENSLACG00000010529	DDX1	98	59.371	Latimeria_chalumnae
FBgn0015075	Ddx1	99	61.043	ENSLOCG00000016473	ddx1	97	60.494	Lepisosteus_oculatus
FBgn0015075	Ddx1	99	60.165	ENSLAFG00000002213	DDX1	98	59.753	Loxodonta_africana
FBgn0015075	Ddx1	99	59.781	ENSMFAG00000033987	DDX1	98	59.234	Macaca_fascicularis
FBgn0015075	Ddx1	99	59.781	ENSMMUG00000023437	DDX1	98	59.234	Macaca_mulatta
FBgn0015075	Ddx1	99	59.781	ENSMNEG00000029189	DDX1	98	59.234	Macaca_nemestrina
FBgn0015075	Ddx1	99	59.781	ENSMLEG00000030787	DDX1	98	59.234	Mandrillus_leucophaeus
FBgn0015075	Ddx1	99	60.055	ENSMAMG00000015916	ddx1	98	59.644	Mastacembelus_armatus
FBgn0015075	Ddx1	99	59.890	ENSMZEG00005015207	ddx1	97	59.282	Maylandia_zebra
FBgn0015075	Ddx1	98	58.516	ENSMGAG00000014025	DDX1	98	58.104	Meleagris_gallopavo
FBgn0015075	Ddx1	63	74.545	ENSMAUG00000016156	Ddx1	97	74.545	Mesocricetus_auratus
FBgn0015075	Ddx1	99	59.918	ENSMICG00000001023	DDX1	98	59.371	Microcebus_murinus
FBgn0015075	Ddx1	99	59.781	ENSMOCG00000000257	Ddx1	98	59.234	Microtus_ochrogaster
FBgn0015075	Ddx1	87	59.438	ENSMMOG00000015397	ddx1	97	59.438	Mola_mola
FBgn0015075	Ddx1	99	60.302	ENSMODG00000010275	DDX1	98	59.753	Monodelphis_domestica
FBgn0015075	Ddx1	99	59.644	ENSMALG00000016409	ddx1	98	59.234	Monopterus_albus
FBgn0015075	Ddx1	99	59.781	MGP_CAROLIEiJ_G0017622	Ddx1	98	59.234	Mus_caroli
FBgn0015075	Ddx1	99	59.508	ENSMUSG00000037149	Ddx1	100	58.115	Mus_musculus
FBgn0015075	Ddx1	99	59.781	MGP_PahariEiJ_G0029378	Ddx1	98	59.234	Mus_pahari
FBgn0015075	Ddx1	99	59.508	MGP_SPRETEiJ_G0018464	Ddx1	96	61.538	Mus_spretus
FBgn0015075	Ddx1	99	59.781	ENSMPUG00000013606	DDX1	98	59.234	Mustela_putorius_furo
FBgn0015075	Ddx1	99	59.917	ENSMLUG00000003027	DDX1	96	59.366	Myotis_lucifugus
FBgn0015075	Ddx1	98	59.724	ENSNGAG00000015783	Ddx1	98	59.172	Nannospalax_galili
FBgn0015075	Ddx1	80	59.145	ENSNBRG00000020677	ddx1	93	59.619	Neolamprologus_brichardi
FBgn0015075	Ddx1	99	59.781	ENSNLEG00000014417	DDX1	98	59.234	Nomascus_leucogenys
FBgn0015075	Ddx1	98	58.897	ENSMEUG00000008254	DDX1	98	58.345	Notamacropus_eugenii
FBgn0015075	Ddx1	88	44.410	ENSOPRG00000004290	DDX1	86	44.618	Ochotona_princeps
FBgn0015075	Ddx1	99	59.918	ENSODEG00000000569	DDX1	98	59.371	Octodon_degus
FBgn0015075	Ddx1	99	59.973	ENSONIG00000000513	ddx1	98	59.563	Oreochromis_niloticus
FBgn0015075	Ddx1	75	58.951	ENSOANG00000005450	DDX1	98	59.058	Ornithorhynchus_anatinus
FBgn0015075	Ddx1	99	60.192	ENSOCUG00000007010	DDX1	98	59.644	Oryctolagus_cuniculus
FBgn0015075	Ddx1	99	59.781	ENSORLG00000016709	ddx1	98	59.371	Oryzias_latipes
FBgn0015075	Ddx1	98	59.586	ENSORLG00020003290	ddx1	98	59.172	Oryzias_latipes_hni
FBgn0015075	Ddx1	99	59.508	ENSORLG00015022438	ddx1	98	59.097	Oryzias_latipes_hsok
FBgn0015075	Ddx1	99	55.495	ENSOMEG00000017620	ddx1	98	55.357	Oryzias_melastigma
FBgn0015075	Ddx1	98	59.780	ENSOGAG00000008730	DDX1	98	59.229	Otolemur_garnettii
FBgn0015075	Ddx1	98	59.835	ENSOARG00000016369	DDX1	98	59.285	Ovis_aries
FBgn0015075	Ddx1	99	59.918	ENSPPAG00000027432	DDX1	98	59.371	Pan_paniscus
FBgn0015075	Ddx1	99	59.918	ENSPPRG00000020556	DDX1	98	59.371	Panthera_pardus
FBgn0015075	Ddx1	99	59.918	ENSPTIG00000008267	DDX1	98	59.371	Panthera_tigris_altaica
FBgn0015075	Ddx1	99	59.918	ENSPTRG00000011670	DDX1	98	59.371	Pan_troglodytes
FBgn0015075	Ddx1	99	59.781	ENSPANG00000025185	DDX1	98	59.234	Papio_anubis
FBgn0015075	Ddx1	99	59.918	ENSPKIG00000012466	ddx1	98	59.586	Paramormyrops_kingsleyae
FBgn0015075	Ddx1	55	57.284	ENSPSIG00000012292	DDX1	100	56.296	Pelodiscus_sinensis
FBgn0015075	Ddx1	99	59.808	ENSPMGG00000000782	ddx1	98	59.671	Periophthalmus_magnuspinnatus
FBgn0015075	Ddx1	99	59.781	ENSPEMG00000016389	Ddx1	98	59.234	Peromyscus_maniculatus_bairdii
FBgn0015075	Ddx1	99	58.848	ENSPMAG00000009118	-	98	58.573	Petromyzon_marinus
FBgn0015075	Ddx1	99	60.739	ENSPCIG00000010941	DDX1	98	60.192	Phascolarctos_cinereus
FBgn0015075	Ddx1	99	60.328	ENSPFOG00000011921	ddx1	98	59.918	Poecilia_formosa
FBgn0015075	Ddx1	86	59.716	ENSPFOG00000006873	-	98	59.716	Poecilia_formosa
FBgn0015075	Ddx1	99	60.192	ENSPLAG00000005939	ddx1	98	59.781	Poecilia_latipinna
FBgn0015075	Ddx1	99	60.328	ENSPMEG00000011140	ddx1	98	59.918	Poecilia_mexicana
FBgn0015075	Ddx1	99	60.055	ENSPREG00000011751	ddx1	98	59.781	Poecilia_reticulata
FBgn0015075	Ddx1	99	59.781	ENSPPYG00000012638	DDX1	98	59.234	Pongo_abelii
FBgn0015075	Ddx1	99	51.436	ENSPCAG00000001491	DDX1	98	50.889	Procavia_capensis
FBgn0015075	Ddx1	99	58.791	ENSPCOG00000028185	DDX1	98	58.345	Propithecus_coquereli
FBgn0015075	Ddx1	99	59.644	ENSPVAG00000013618	DDX1	98	59.097	Pteropus_vampyrus
FBgn0015075	Ddx1	99	59.781	ENSPNYG00000013839	ddx1	98	59.371	Pundamilia_nyererei
FBgn0015075	Ddx1	87	57.722	ENSPNAG00000017033	ddx1	95	57.722	Pygocentrus_nattereri
FBgn0015075	Ddx1	99	59.644	ENSRNOG00000006652	Ddx1	98	59.097	Rattus_norvegicus
FBgn0015075	Ddx1	99	58.960	ENSRBIG00000041664	DDX1	99	59.711	Rhinopithecus_bieti
FBgn0015075	Ddx1	99	59.508	ENSRROG00000031167	DDX1	98	58.960	Rhinopithecus_roxellana
FBgn0015075	Ddx1	99	59.644	ENSSBOG00000027577	DDX1	98	59.097	Saimiri_boliviensis_boliviensis
FBgn0015075	Ddx1	99	55.540	ENSSHAG00000009363	DDX1	98	55.404	Sarcophilus_harrisii
FBgn0015075	Ddx1	99	58.550	ENSSFOG00015014476	ddx1	98	58.276	Scleropages_formosus
FBgn0015075	Ddx1	99	60.328	ENSSMAG00000010094	ddx1	98	59.918	Scophthalmus_maximus
FBgn0015075	Ddx1	99	60.192	ENSSDUG00000012334	ddx1	98	59.781	Seriola_dumerili
FBgn0015075	Ddx1	99	59.918	ENSSLDG00000025345	ddx1	98	59.508	Seriola_lalandi_dorsalis
FBgn0015075	Ddx1	89	61.576	ENSSARG00000004536	DDX1	89	59.606	Sorex_araneus
FBgn0015075	Ddx1	99	58.413	ENSSPUG00000018835	DDX1	98	58.276	Sphenodon_punctatus
FBgn0015075	Ddx1	99	57.517	ENSSPAG00000023554	ddx1	98	57.103	Stegastes_partitus
FBgn0015075	Ddx1	99	59.918	ENSSSCG00000008619	DDX1	98	59.371	Sus_scrofa
FBgn0015075	Ddx1	99	60.744	ENSTGUG00000013096	DDX1	98	60.193	Taeniopygia_guttata
FBgn0015075	Ddx1	99	59.534	ENSTRUG00000015765	ddx1	98	59.122	Takifugu_rubripes
FBgn0015075	Ddx1	99	59.918	ENSTNIG00000016309	ddx1	98	59.508	Tetraodon_nigroviridis
FBgn0015075	Ddx1	98	57.815	ENSTBEG00000008454	DDX1	98	57.815	Tupaia_belangeri
FBgn0015075	Ddx1	99	59.644	ENSTTRG00000005081	DDX1	98	59.097	Tursiops_truncatus
FBgn0015075	Ddx1	61	58.239	ENSUAMG00000017375	DDX1	85	57.596	Ursus_americanus
FBgn0015075	Ddx1	98	59.862	ENSUMAG00000023450	DDX1	98	59.310	Ursus_maritimus
FBgn0015075	Ddx1	84	63.158	ENSVPAG00000007764	DDX1	83	61.858	Vicugna_pacos
FBgn0015075	Ddx1	99	59.917	ENSVVUG00000013085	DDX1	94	59.366	Vulpes_vulpes
FBgn0015075	Ddx1	99	59.371	ENSXETG00000017825	ddx1	98	58.960	Xenopus_tropicalis
FBgn0015075	Ddx1	99	58.378	ENSXCOG00000007082	ddx1	98	57.973	Xiphophorus_couchianus
FBgn0015075	Ddx1	99	60.055	ENSXMAG00000004555	ddx1	98	59.644	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001700	embryonic development via the syncytial blastoderm	8666277.	IEP	Process
GO:0003682	chromatin binding	-	ISS	Function
GO:0003712	transcription coregulator activity	-	ISS	Function
GO:0004386	helicase activity	10908586.	ISS	Function
GO:0004518	nuclease activity	-	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISS	Component
GO:0006302	double-strand break repair	-	ISS	Process
GO:0007283	spermatogenesis	26433063.	IMP	Process
GO:0008026	ATP-dependent helicase activity	-	ISS	Function
GO:0008143	poly(A) binding	-	ISS	Function
GO:0032508	DNA duplex unwinding	-	ISS	Process
GO:0033677	DNA/RNA helicase activity	-	ISS	Function
GO:0042254	ribosome biogenesis	8666277.	ISS	Process
GO:0048477	oogenesis	26433063.	IMP	Process