EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0015299 (Gene tree)
Gene ID: 34120
Gene Symbol: Ssb-c31a
Alias: -
Full Name: Single stranded-binding protein c31A
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 592 bases
Position: chr2L:8211347-8211938
Accession: FBgn0015299
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0079211	PC4	PF02229.16	1.3e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0079590	-	536	-	FBpp0079211	110 (aa)	-	Q9VLR5

Gene Model

Click here to download FBgn0015299's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0015299's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0015299	Ssb-c31a	98	36.800	ENSCPBG00000010898	-	72	40.860	Chrysemys_picta_bellii
FBgn0015299	Ssb-c31a	99	36.364	ENSCING00000017560	-	56	42.647	Ciona_intestinalis
FBgn0015299	Ssb-c31a	75	39.024	ENSCSAVG00000009535	-	64	39.506	Ciona_savignyi
FBgn0015299	Ssb-c31a	50	39.286	ENSCSEG00000009205	-	70	36.364	Cynoglossus_semilaevis
FBgn0015299	Ssb-c31a	51	38.596	ENSCSEG00000011154	-	70	36.364	Cynoglossus_semilaevis
FBgn0015299	Ssb-c31a	52	39.655	ENSCVAG00000021573	-	53	37.778	Cyprinodon_variegatus
FBgn0015299	Ssb-c31a	50	41.071	ENSELUG00000022688	sub1	72	38.947	Esox_lucius
FBgn0015299	Ssb-c31a	79	35.870	ENSELUG00000005136	TCP4	71	35.870	Esox_lucius
FBgn0015299	Ssb-c31a	50	41.071	ENSGAFG00000016251	-	71	40.449	Gambusia_affinis
FBgn0015299	Ssb-c31a	50	41.071	ENSKMAG00000013670	-	71	37.079	Kryptolebias_marmoratus
FBgn0015299	Ssb-c31a	98	32.520	ENSMMOG00000008698	-	70	33.333	Mola_mola
FBgn0015299	Ssb-c31a	50	41.071	ENSONIG00000013958	-	72	34.444	Oreochromis_niloticus
FBgn0015299	Ssb-c31a	50	41.071	ENSORLG00000017237	sub1	71	35.955	Oryzias_latipes
FBgn0015299	Ssb-c31a	50	41.071	ENSORLG00020014865	sub1	71	35.955	Oryzias_latipes_hni
FBgn0015299	Ssb-c31a	50	41.071	ENSORLG00015005820	sub1	71	35.955	Oryzias_latipes_hsok
FBgn0015299	Ssb-c31a	50	41.071	ENSOMEG00000003351	-	71	35.955	Oryzias_melastigma
FBgn0015299	Ssb-c31a	79	38.462	ENSPMGG00000017654	-	72	38.462	Periophthalmus_magnuspinnatus
FBgn0015299	Ssb-c31a	50	41.071	ENSPFOG00000017101	-	71	40.449	Poecilia_formosa
FBgn0015299	Ssb-c31a	50	41.071	ENSPLAG00000015088	-	71	40.449	Poecilia_latipinna
FBgn0015299	Ssb-c31a	50	41.071	ENSPMEG00000023692	-	71	40.449	Poecilia_mexicana
FBgn0015299	Ssb-c31a	50	41.071	ENSPREG00000011918	-	71	40.449	Poecilia_reticulata
FBgn0015299	Ssb-c31a	50	41.071	ENSXCOG00000009356	-	71	40.449	Xiphophorus_couchianus
FBgn0015299	Ssb-c31a	50	41.071	ENSXMAG00000013353	-	71	40.449	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003697	single-stranded DNA binding	8559667.	IDA	Function
GO:0003713	transcription coactivator activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	8559667.	IDA	Component
GO:0005667	transcription factor complex	21873635.	IBA	Component
GO:0045892	negative regulation of transcription, DNA-templated	8559667.	IDA	Process
GO:0060261	positive regulation of transcription initiation from RNA polymerase II promoter	21873635.	IBA	Process