EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0015520 (Gene tree)
Gene ID: 42026
Gene Symbol: nonA-l
Alias: -
Full Name: nonA-like
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 2908 bases
Position: chr3R:16640205-16643112
Accession: FBgn0015520
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0082785	RRM_1	PF00076.22	7.9e-30	1	2
FBpp0082785	RRM_1	PF00076.22	7.9e-30	2	2
FBpp0305874	RRM_1	PF00076.22	7.9e-30	1	2
FBpp0305874	RRM_1	PF00076.22	7.9e-30	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0333727	-	2908	-	FBpp0305874	630 (aa)	-	Q24113
FBtr0083335	-	2569	-	FBpp0082785	630 (aa)	-	Q24113

Gene Model

Click here to download FBgn0015520's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0015520's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0015520	nonA-l	69	69.114	FBgn0004227	nonA	100	58.033

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0015520	nonA-l	51	41.231	ENSCING00000004050	-	57	41.231	Ciona_intestinalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	10908586.	ISS	Process
GO:0000976	transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005681	spliceosomal complex	10908586.	ISS	Component
GO:0008187	poly-pyrimidine tract binding	10908586.	ISS	Function