EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0015621 (Gene tree)
Gene ID: 33259
Gene Symbol: Clp
Alias: -
Full Name: Clipper
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 1246 bases
Position: chr2L:819964-821209
Accession: FBgn0015621
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0077676	zf-CCCH	PF00642.24	6.3e-16	1	1
FBpp0077676	zf-CCHC	PF00098.23	5.6e-10	1	2
FBpp0077676	zf-CCHC	PF00098.23	5.6e-10	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0078011	-	1246	-	FBpp0077676	296 (aa)	-	Q9VPT8

Gene Model

Click here to download FBgn0015621's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0015621's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0015621	Clp	99	54.110	ENSG00000160917	CPSF4	99	81.982	Homo_sapiens
FBgn0015621	Clp	68	45.755	ENSAPOG00000004921	cpsf4	100	45.455	Acanthochromis_polyacanthus
FBgn0015621	Clp	99	54.110	ENSAMEG00000006252	CPSF4	100	54.795	Ailuropoda_melanoleuca
FBgn0015621	Clp	99	54.110	ENSACIG00000009248	cpsf4	100	54.266	Amphilophus_citrinellus
FBgn0015621	Clp	99	54.967	ENSAOCG00000019616	cpsf4	100	54.515	Amphiprion_ocellaris
FBgn0015621	Clp	99	54.967	ENSAPEG00000011679	cpsf4	100	54.515	Amphiprion_percula
FBgn0015621	Clp	99	54.515	ENSATEG00000007010	cpsf4	100	54.181	Anabas_testudineus
FBgn0015621	Clp	99	54.795	ENSACAG00000012941	CPSF4	89	54.452	Anolis_carolinensis
FBgn0015621	Clp	99	54.110	ENSANAG00000021360	CPSF4	100	54.110	Aotus_nancymaae
FBgn0015621	Clp	99	54.181	ENSACLG00000010374	cpsf4	96	62.385	Astatotilapia_calliptera
FBgn0015621	Clp	99	53.846	ENSAMXG00000031647	cpsf4	100	54.181	Astyanax_mexicanus
FBgn0015621	Clp	99	53.082	ENSBTAG00000002090	CPSF4	100	52.740	Bos_taurus
FBgn0015621	Clp	99	54.209	ENSCJAG00000015826	CPSF4	100	54.110	Callithrix_jacchus
FBgn0015621	Clp	99	54.110	ENSCAFG00000015036	CPSF4	100	65.089	Canis_familiaris
FBgn0015621	Clp	99	51.027	ENSCAFG00020014462	CPSF4	100	51.712	Canis_lupus_dingo
FBgn0015621	Clp	99	54.110	ENSCHIG00000014313	CPSF4	100	54.452	Capra_hircus
FBgn0015621	Clp	89	50.758	ENSTSYG00000008195	-	99	48.929	Carlito_syrichta
FBgn0015621	Clp	99	53.425	ENSTSYG00000005712	-	100	51.839	Carlito_syrichta
FBgn0015621	Clp	99	47.782	ENSTSYG00000014604	-	100	46.333	Carlito_syrichta
FBgn0015621	Clp	84	54.400	ENSCAPG00000013881	CPSF4	95	53.383	Cavia_aperea
FBgn0015621	Clp	99	53.082	ENSCPOG00000001783	CPSF4	100	51.505	Cavia_porcellus
FBgn0015621	Clp	99	54.110	ENSCCAG00000028291	CPSF4	100	54.110	Cebus_capucinus
FBgn0015621	Clp	99	54.795	ENSCATG00000038440	CPSF4	100	54.110	Cercocebus_atys
FBgn0015621	Clp	99	54.110	ENSCLAG00000007050	CPSF4	100	54.795	Chinchilla_lanigera
FBgn0015621	Clp	99	54.110	ENSCSAG00000017795	CPSF4	100	54.110	Chlorocebus_sabaeus
FBgn0015621	Clp	80	55.932	ENSCPBG00000020869	CPSF4	99	55.144	Chrysemys_picta_bellii
FBgn0015621	Clp	57	66.071	ENSCPBG00000010269	-	100	66.071	Chrysemys_picta_bellii
FBgn0015621	Clp	95	48.043	ENSCING00000021080	-	96	48.399	Ciona_intestinalis
FBgn0015621	Clp	95	47.315	ENSCSAVG00000011469	-	97	48.136	Ciona_savignyi
FBgn0015621	Clp	99	54.110	ENSCANG00000019384	CPSF4	100	54.110	Colobus_angolensis_palliatus
FBgn0015621	Clp	99	53.082	ENSCGRG00001024184	Cpsf4	100	51.505	Cricetulus_griseus_chok1gshd
FBgn0015621	Clp	99	54.110	ENSCGRG00000013892	Cpsf4	100	54.795	Cricetulus_griseus_crigri
FBgn0015621	Clp	99	55.184	ENSCSEG00000019055	cpsf4	100	55.184	Cynoglossus_semilaevis
FBgn0015621	Clp	99	55.479	ENSCVAG00000016528	cpsf4	100	55.137	Cyprinodon_variegatus
FBgn0015621	Clp	99	54.795	ENSDARG00000020217	cpsf4	100	53.488	Danio_rerio
FBgn0015621	Clp	99	54.110	ENSDNOG00000006344	CPSF4	100	54.422	Dasypus_novemcinctus
FBgn0015621	Clp	80	55.932	ENSDORG00000000742	Cpsf4	99	56.780	Dipodomys_ordii
FBgn0015621	Clp	56	68.862	ENSETEG00000002608	CPSF4	61	68.862	Echinops_telfairi
FBgn0015621	Clp	98	50.345	ENSEBUG00000012552	cpsf4	98	50.345	Eptatretus_burgeri
FBgn0015621	Clp	99	53.082	ENSEASG00005002487	CPSF4	100	51.505	Equus_asinus_asinus
FBgn0015621	Clp	99	54.110	ENSECAG00000007525	CPSF4	100	54.795	Equus_caballus
FBgn0015621	Clp	99	53.846	ENSELUG00000011481	cpsf4	100	54.795	Esox_lucius
FBgn0015621	Clp	99	54.110	ENSFCAG00000015070	CPSF4	100	54.795	Felis_catus
FBgn0015621	Clp	99	53.512	ENSFALG00000013799	CPSF4	100	52.508	Ficedula_albicollis
FBgn0015621	Clp	56	49.425	ENSFALG00000012906	-	100	49.425	Ficedula_albicollis
FBgn0015621	Clp	90	55.639	ENSFDAG00000014092	CPSF4	100	56.391	Fukomys_damarensis
FBgn0015621	Clp	99	54.181	ENSFHEG00000010880	cpsf4	100	54.452	Fundulus_heteroclitus
FBgn0015621	Clp	99	54.181	ENSGMOG00000002330	cpsf4	100	53.821	Gadus_morhua
FBgn0015621	Clp	69	31.754	ENSGALG00000004441	-	92	30.882	Gallus_gallus
FBgn0015621	Clp	99	53.177	ENSGALG00000004714	CPSF4	100	52.508	Gallus_gallus
FBgn0015621	Clp	99	56.164	ENSGAFG00000010580	cpsf4	100	55.479	Gambusia_affinis
FBgn0015621	Clp	99	54.110	ENSGACG00000007792	cpsf4	100	53.767	Gasterosteus_aculeatus
FBgn0015621	Clp	99	54.795	ENSGAGG00000021835	CPSF4	100	55.137	Gopherus_agassizii
FBgn0015621	Clp	56	66.467	ENSGAGG00000020579	-	92	66.467	Gopherus_agassizii
FBgn0015621	Clp	99	54.110	ENSGGOG00000015131	CPSF4	100	54.110	Gorilla_gorilla
FBgn0015621	Clp	99	54.181	ENSHBUG00000013699	cpsf4	100	54.181	Haplochromis_burtoni
FBgn0015621	Clp	99	53.242	ENSHGLG00000017150	CPSF4	100	54.082	Heterocephalus_glaber_female
FBgn0015621	Clp	59	48.276	ENSHGLG00100017302	-	78	48.276	Heterocephalus_glaber_male
FBgn0015621	Clp	87	53.488	ENSHGLG00100009215	-	100	54.440	Heterocephalus_glaber_male
FBgn0015621	Clp	99	55.137	ENSHCOG00000004397	cpsf4	100	53.135	Hippocampus_comes
FBgn0015621	Clp	99	55.442	ENSIPUG00000017147	cpsf4	100	54.181	Ictalurus_punctatus
FBgn0015621	Clp	99	54.110	ENSSTOG00000001688	CPSF4	100	54.795	Ictidomys_tridecemlineatus
FBgn0015621	Clp	99	54.110	ENSJJAG00000019426	Cpsf4	100	54.795	Jaculus_jaculus
FBgn0015621	Clp	99	54.967	ENSKMAG00000015642	cpsf4	100	54.967	Kryptolebias_marmoratus
FBgn0015621	Clp	99	54.110	ENSLACG00000010938	CPSF4	100	53.425	Latimeria_chalumnae
FBgn0015621	Clp	98	47.241	ENSLACG00000018470	-	99	47.241	Latimeria_chalumnae
FBgn0015621	Clp	99	52.560	ENSLOCG00000004814	cpsf4	100	52.508	Lepisosteus_oculatus
FBgn0015621	Clp	99	54.795	ENSLAFG00000000159	CPSF4	100	54.949	Loxodonta_africana
FBgn0015621	Clp	99	54.110	ENSMFAG00000001462	CPSF4	100	54.110	Macaca_fascicularis
FBgn0015621	Clp	99	54.110	ENSMMUG00000019191	CPSF4	100	54.110	Macaca_mulatta
FBgn0015621	Clp	99	54.110	ENSMNEG00000032306	CPSF4	100	54.110	Macaca_nemestrina
FBgn0015621	Clp	99	54.795	ENSMLEG00000034721	CPSF4	100	54.110	Mandrillus_leucophaeus
FBgn0015621	Clp	99	53.846	ENSMAMG00000006244	cpsf4	100	54.515	Mastacembelus_armatus
FBgn0015621	Clp	99	54.181	ENSMZEG00005007515	cpsf4	100	54.181	Maylandia_zebra
FBgn0015621	Clp	87	53.585	ENSMGAG00000004235	CPSF4	100	52.830	Meleagris_gallopavo
FBgn0015621	Clp	99	54.110	ENSMAUG00000021253	Cpsf4	100	54.795	Mesocricetus_auratus
FBgn0015621	Clp	99	54.110	ENSMICG00000017429	CPSF4	100	54.110	Microcebus_murinus
FBgn0015621	Clp	99	54.110	ENSMOCG00000014901	Cpsf4	100	54.795	Microtus_ochrogaster
FBgn0015621	Clp	99	53.767	ENSMMOG00000001813	cpsf4	99	63.429	Mola_mola
FBgn0015621	Clp	99	53.767	ENSMODG00000001367	CPSF4	100	54.795	Monodelphis_domestica
FBgn0015621	Clp	99	56.333	ENSMALG00000012611	cpsf4	100	56.333	Monopterus_albus
FBgn0015621	Clp	99	54.110	MGP_CAROLIEiJ_G0028012	Cpsf4	100	54.795	Mus_caroli
FBgn0015621	Clp	99	54.110	ENSMUSG00000029625	Cpsf4	100	54.795	Mus_musculus
FBgn0015621	Clp	99	54.110	MGP_PahariEiJ_G0024581	Cpsf4	100	54.795	Mus_pahari
FBgn0015621	Clp	99	54.110	MGP_SPRETEiJ_G0029013	Cpsf4	100	54.795	Mus_spretus
FBgn0015621	Clp	99	54.110	ENSMPUG00000016508	CPSF4	100	54.795	Mustela_putorius_furo
FBgn0015621	Clp	87	53.876	ENSMLUG00000010980	CPSF4	100	53.488	Myotis_lucifugus
FBgn0015621	Clp	99	54.110	ENSNGAG00000001567	Cpsf4	100	54.422	Nannospalax_galili
FBgn0015621	Clp	92	54.480	ENSNBRG00000003943	cpsf4	99	54.480	Neolamprologus_brichardi
FBgn0015621	Clp	99	53.425	ENSNLEG00000011074	CPSF4	100	54.795	Nomascus_leucogenys
FBgn0015621	Clp	99	53.767	ENSMEUG00000006955	CPSF4	100	54.795	Notamacropus_eugenii
FBgn0015621	Clp	99	53.767	ENSOPRG00000013663	CPSF4	100	54.452	Ochotona_princeps
FBgn0015621	Clp	99	44.898	ENSODEG00000018283	-	93	43.522	Octodon_degus
FBgn0015621	Clp	93	45.126	ENSODEG00000009779	-	95	44.444	Octodon_degus
FBgn0015621	Clp	99	54.110	ENSODEG00000011181	-	100	54.795	Octodon_degus
FBgn0015621	Clp	99	54.515	ENSONIG00000008495	cpsf4	100	54.515	Oreochromis_niloticus
FBgn0015621	Clp	96	45.517	ENSOANG00000009568	-	97	45.517	Ornithorhynchus_anatinus
FBgn0015621	Clp	87	56.202	ENSOANG00000007729	CPSF4	100	55.039	Ornithorhynchus_anatinus
FBgn0015621	Clp	99	53.425	ENSOCUG00000002437	CPSF4	70	54.795	Oryctolagus_cuniculus
FBgn0015621	Clp	99	53.846	ENSORLG00000022798	cpsf4	100	53.846	Oryzias_latipes
FBgn0015621	Clp	99	53.846	ENSORLG00020008548	cpsf4	100	53.846	Oryzias_latipes_hni
FBgn0015621	Clp	99	53.846	ENSORLG00015019575	cpsf4	100	53.846	Oryzias_latipes_hsok
FBgn0015621	Clp	99	54.849	ENSOMEG00000005176	cpsf4	100	54.849	Oryzias_melastigma
FBgn0015621	Clp	99	54.110	ENSOGAG00000010884	CPSF4	100	54.795	Otolemur_garnettii
FBgn0015621	Clp	99	49.488	ENSOARG00000018668	CPSF4	100	49.488	Ovis_aries
FBgn0015621	Clp	99	54.110	ENSPPAG00000043355	CPSF4	100	54.110	Pan_paniscus
FBgn0015621	Clp	99	54.110	ENSPPRG00000003134	CPSF4	100	54.795	Panthera_pardus
FBgn0015621	Clp	90	55.472	ENSPTIG00000005604	CPSF4	90	56.981	Panthera_tigris_altaica
FBgn0015621	Clp	99	54.110	ENSPTRG00000019453	CPSF4	100	54.110	Pan_troglodytes
FBgn0015621	Clp	99	54.110	ENSPANG00000023123	CPSF4	100	54.110	Papio_anubis
FBgn0015621	Clp	99	54.795	ENSPKIG00000014278	cpsf4	100	54.110	Paramormyrops_kingsleyae
FBgn0015621	Clp	79	49.576	ENSPSIG00000018198	-	98	49.153	Pelodiscus_sinensis
FBgn0015621	Clp	80	55.508	ENSPSIG00000011229	CPSF4	99	54.733	Pelodiscus_sinensis
FBgn0015621	Clp	99	51.027	ENSPMGG00000017735	cpsf4	100	51.027	Periophthalmus_magnuspinnatus
FBgn0015621	Clp	99	54.110	ENSPEMG00000004508	Cpsf4	100	54.795	Peromyscus_maniculatus_bairdii
FBgn0015621	Clp	99	53.767	ENSPCIG00000024776	CPSF4	100	54.795	Phascolarctos_cinereus
FBgn0015621	Clp	99	56.164	ENSPFOG00000014912	cpsf4	100	55.479	Poecilia_formosa
FBgn0015621	Clp	99	53.378	ENSPLAG00000009599	cpsf4	100	53.378	Poecilia_latipinna
FBgn0015621	Clp	99	56.164	ENSPMEG00000009790	cpsf4	100	55.479	Poecilia_mexicana
FBgn0015621	Clp	99	55.822	ENSPREG00000018166	cpsf4	100	55.137	Poecilia_reticulata
FBgn0015621	Clp	87	54.864	ENSPPYG00000017378	CPSF4	100	54.864	Pongo_abelii
FBgn0015621	Clp	99	54.110	ENSPCAG00000001892	CPSF4	100	54.949	Procavia_capensis
FBgn0015621	Clp	99	54.110	ENSPCOG00000012771	CPSF4	100	54.452	Propithecus_coquereli
FBgn0015621	Clp	99	50.685	ENSPVAG00000007531	CPSF4	100	51.020	Pteropus_vampyrus
FBgn0015621	Clp	99	54.181	ENSPNYG00000018559	cpsf4	100	54.181	Pundamilia_nyererei
FBgn0015621	Clp	99	54.915	ENSPNAG00000003736	cpsf4	100	54.515	Pygocentrus_nattereri
FBgn0015621	Clp	99	53.082	ENSRNOG00000000985	Cpsf4	100	52.740	Rattus_norvegicus
FBgn0015621	Clp	87	55.253	ENSRBIG00000033886	CPSF4	100	55.642	Rhinopithecus_bieti
FBgn0015621	Clp	99	53.082	ENSRROG00000040431	CPSF4	100	51.505	Rhinopithecus_roxellana
FBgn0015621	Clp	99	54.110	ENSSBOG00000020493	CPSF4	100	54.110	Saimiri_boliviensis_boliviensis
FBgn0015621	Clp	99	53.767	ENSSHAG00000011533	CPSF4	100	54.795	Sarcophilus_harrisii
FBgn0015621	Clp	99	54.795	ENSSFOG00015007883	cpsf4	100	54.181	Scleropages_formosus
FBgn0015621	Clp	99	54.110	ENSSMAG00000006374	cpsf4	100	52.843	Scophthalmus_maximus
FBgn0015621	Clp	99	56.187	ENSSDUG00000018887	cpsf4	100	56.187	Seriola_dumerili
FBgn0015621	Clp	99	56.187	ENSSLDG00000019078	cpsf4	100	56.187	Seriola_lalandi_dorsalis
FBgn0015621	Clp	87	55.253	ENSSARG00000012416	CPSF4	100	56.031	Sorex_araneus
FBgn0015621	Clp	99	54.082	ENSSPUG00000003549	CPSF4	100	54.082	Sphenodon_punctatus
FBgn0015621	Clp	70	55.656	ENSSPUG00000014803	-	98	55.656	Sphenodon_punctatus
FBgn0015621	Clp	99	53.767	ENSSPAG00000006174	cpsf4	100	54.452	Stegastes_partitus
FBgn0015621	Clp	99	53.082	ENSSSCG00000026896	CPSF4	100	51.505	Sus_scrofa
FBgn0015621	Clp	99	53.156	ENSTGUG00000007552	CPSF4	100	52.159	Taeniopygia_guttata
FBgn0015621	Clp	99	54.452	ENSTRUG00000024220	cpsf4	100	54.452	Takifugu_rubripes
FBgn0015621	Clp	99	54.110	ENSTNIG00000006265	cpsf4	100	54.110	Tetraodon_nigroviridis
FBgn0015621	Clp	87	50.195	ENSTBEG00000011406	CPSF4	100	50.973	Tupaia_belangeri
FBgn0015621	Clp	59	70.115	ENSTTRG00000003007	CPSF4	64	70.115	Tursiops_truncatus
FBgn0015621	Clp	59	70.115	ENSUAMG00000008051	CPSF4	66	70.115	Ursus_americanus
FBgn0015621	Clp	99	53.082	ENSUMAG00000009474	CPSF4	100	52.740	Ursus_maritimus
FBgn0015621	Clp	99	53.082	ENSVVUG00000008824	CPSF4	100	51.505	Vulpes_vulpes
FBgn0015621	Clp	99	48.814	ENSXETG00000004641	cpsf4l	100	47.619	Xenopus_tropicalis
FBgn0015621	Clp	99	51.815	ENSXETG00000009892	cpsf4	100	51.987	Xenopus_tropicalis
FBgn0015621	Clp	99	56.164	ENSXCOG00000016040	cpsf4	100	55.479	Xiphophorus_couchianus
FBgn0015621	Clp	99	56.164	ENSXMAG00000024670	cpsf4	100	55.479	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004521	endoribonuclease activity	8943320.	IDA	Function
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	10908584.	ISS	Component
GO:0006378	mRNA polyadenylation	10908584.	ISS	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process