EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0015778 (Gene tree)
Gene ID: 47998
Gene Symbol: rin
Alias: -
Full Name: rasputin
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 7524 bases
Position: chr3R:13647004-13654527
Accession: FBgn0015778
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0082265	NTF2	PF02136.20	3.7e-36	1	1
FBpp0082267	NTF2	PF02136.20	3.7e-36	1	1
FBpp0312063	NTF2	PF02136.20	3.7e-36	1	1
FBpp0312064	NTF2	PF02136.20	3.7e-36	1	1
FBpp0082265	RRM_1	PF00076.22	3.1e-11	1	1
FBpp0082267	RRM_1	PF00076.22	3.1e-11	1	1
FBpp0312063	RRM_1	PF00076.22	3.1e-11	1	1
FBpp0312064	RRM_1	PF00076.22	3.1e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0082799	-	3501	-	FBpp0082267	690 (aa)	-	Q9VFT4
FBtr0082797	-	3268	-	FBpp0082265	690 (aa)	-	Q9VFT4
FBtr0346347	-	5382	-	FBpp0312064	690 (aa)	-	Q9VFT4
FBtr0346346	-	3167	-	FBpp0312063	690 (aa)	-	Q9NH72

Gene Model

Click here to download FBgn0015778's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0015778's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0015778	rin	53	60.690	ENSLACG00000002985	G3BP2	55	59.509	Latimeria_chalumnae
FBgn0015778	rin	52	54.819	ENSPKIG00000013310	-	55	54.819	Paramormyrops_kingsleyae
FBgn0015778	rin	54	39.252	ENSRBIG00000028792	-	85	38.889	Rhinopithecus_bieti

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0001752	compound eye photoreceptor fate commitment	10725247.	IMP	Process
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005515	protein binding	23874212.	IPI	Function
GO:0005737	cytoplasm	24292889.	HDA	Component
GO:0005737	cytoplasm	23874212.	IDA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	10725247.	IDA	Component
GO:0007265	Ras protein signal transduction	10725247.	IGI	Process
GO:0008069	dorsal/ventral axis specification, ovarian follicular epithelium	24069162.	IGI	Process
GO:0008069	dorsal/ventral axis specification, ovarian follicular epithelium	24069162.	IMP	Process
GO:0010628	positive regulation of gene expression	24069162.	IMP	Process
GO:0016318	ommatidial rotation	10725247.	IMP	Process
GO:0045571	negative regulation of imaginal disc growth	23874212.	IGI	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	24069162.	IPI	Component