EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: FBgn0016070 (Gene tree)
Gene ID: 39034
Gene Symbol: smg
Alias: -
Full Name: smaug
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 7673 bases
Position: chr3L:8990317-8997989
Accession: FBgn0016070
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0076276	PHAT	PF09246.10	2.1e-52	1	1
FBpp0076277	PHAT	PF09246.10	2.1e-52	1	1
FBpp0076278	PHAT	PF09246.10	2.1e-52	1	1
FBpp0288543	PHAT	PF09246.10	2.1e-52	1	1
FBpp0288542	PHAT	PF09246.10	2.6e-52	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0076549	-	4624	-	FBpp0076276	999 (aa)	-	Q23972
FBtr0290104	-	4465	-	FBpp0288543	999 (aa)	-	Q23972
FBtr0290103	-	4927	-	FBpp0288542	1109 (aa)	-	Q23972-2
FBtr0076550	-	4670	-	FBpp0076277	999 (aa)	-	Q23972
FBtr0076551	-	4562	-	FBpp0076278	999 (aa)	-	Q23972

Gene Model

Click here to download FBgn0016070's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0016070's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	16793774.17050620.	IMP	Process
GO:0000900	translation repressor activity, mRNA regulatory element binding	12414187.	TAS	Function
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	17403906.	IDA	Component
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	12942139.	TAS	Function
GO:0003730	mRNA 3'-UTR binding	11700288.12414187.14659692.	TAS	Function
GO:0005737	cytoplasm	10488336.25816335.	IDA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0017022	myosin binding	18045836.	IPI	Function
GO:0017148	negative regulation of translation	21873635.	IBA	Process
GO:0017148	negative regulation of translation	10488336.	IDA	Process
GO:0017148	negative regulation of translation	11700288.12414187.14659692.	TAS	Process
GO:0030371	translation repressor activity	21873635.	IBA	Function
GO:0030371	translation repressor activity	10488336.	IDA	Function
GO:0030371	translation repressor activity	11700288.	TAS	Function
GO:0043488	regulation of mRNA stability	21873635.	IBA	Process
GO:0043488	regulation of mRNA stability	17199047.	IMP	Process
GO:0051236	establishment of RNA localization	15723788.	IMP	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	25816335.	IMP	Process