EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0078983	RRM_1	PF00076.22	6e-18	1	1
FBpp0303793	RRM_1	PF00076.22	6e-18	1	1
FBpp0078983	U1snRNP70_N	PF12220.8	7.5e-24	1	1
FBpp0303793	U1snRNP70_N	PF12220.8	7.5e-24	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0079355	-	1834	-	FBpp0078983	448 (aa)	-	P17133
FBtr0331375	-	2948	-	FBpp0303793	448 (aa)	-	P17133

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0016978	snRNP-U1-70K	64	54.196	ENSANAG00000036787	SNRNP70	99	60.366	Aotus_nancymaae
FBgn0016978	snRNP-U1-70K	52	52.439	WBGene00004390	rnp-7	57	57.368	Caenorhabditis_elegans
FBgn0016978	snRNP-U1-70K	58	59.696	ENSCJAG00000000193	SNRNP70	99	60.366	Callithrix_jacchus
FBgn0016978	snRNP-U1-70K	59	59.623	ENSCANG00000036607	SNRNP70	86	68.396	Colobus_angolensis_palliatus
FBgn0016978	snRNP-U1-70K	59	59.623	ENSGGOG00000008245	SNRNP70	99	60.366	Gorilla_gorilla
FBgn0016978	snRNP-U1-70K	58	59.696	ENSMICG00000038437	SNRNP70	99	60.366	Microcebus_murinus
FBgn0016978	snRNP-U1-70K	50	66.520	ENSOANG00000005213	SNRNP70	93	68.396	Ornithorhynchus_anatinus
FBgn0016978	snRNP-U1-70K	70	53.918	ENSOARG00000012608	SNRNP70	57	68.396	Ovis_aries
FBgn0016978	snRNP-U1-70K	59	60.377	ENSPPAG00000035067	SNRNP70	99	60.366	Pan_paniscus
FBgn0016978	snRNP-U1-70K	59	60.377	ENSPTRG00000011277	SNRNP70	99	60.366	Pan_troglodytes
FBgn0016978	snRNP-U1-70K	59	50.936	ENSPSIG00000015251	SNRNP70	84	57.944	Pelodiscus_sinensis
FBgn0016978	snRNP-U1-70K	58	56.654	ENSPCOG00000023103	SNRNP70	75	64.623	Propithecus_coquereli
FBgn0016978	snRNP-U1-70K	59	60.377	ENSRBIG00000042387	SNRNP70	79	68.396	Rhinopithecus_bieti
FBgn0016978	snRNP-U1-70K	59	60.377	ENSRROG00000033636	SNRNP70	79	68.396	Rhinopithecus_roxellana
FBgn0016978	snRNP-U1-70K	58	59.696	ENSUMAG00000001467	SNRNP70	99	60.366	Ursus_maritimus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	11545738.	IDA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005515	protein binding	15990112.	IPI	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0005681	spliceosomal complex	-	ISS	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	10908584.	ISS	Component
GO:0007283	spermatogenesis	27035939.	IMP	Process
GO:0016607	nuclear speck	-	ISS	Component
GO:0030619	U1 snRNA binding	-	ISS	Function
GO:0043484	regulation of RNA splicing	-	ISS	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	11545738.	IPI	Process
GO:0048477	oogenesis	24244416.	IMP	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component