EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0017550 (Gene tree)
Gene ID: 40683
Gene Symbol: Rga
Alias: -
Full Name: Regena
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 5838 bases
Position: chr3R:5607275-5613112
Accession: FBgn0017550
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0078391	NOT2_3_5	PF04153.18	5.8e-26	1	1
FBpp0311361	NOT2_3_5	PF04153.18	5.8e-26	1	1
FBpp0078390	NOT2_3_5	PF04153.18	6e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0345140	-	2514	-	FBpp0311361	579 (aa)	-	A0A0B4LHS9
FBtr0078741	-	2902	-	FBpp0078390	585 (aa)	-	Q94547
FBtr0078742	-	2816	-	FBpp0078391	579 (aa)	-	Q94547

Gene Model

Click here to download FBgn0017550's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0017550's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0017550	Rga	59	51.948	ENSG00000111596	CNOT2	96	55.738	Homo_sapiens
FBgn0017550	Rga	54	52.174	ENSAPOG00000021013	cnot2	52	56.219	Acanthochromis_polyacanthus
FBgn0017550	Rga	59	51.948	ENSAMEG00000011938	CNOT2	51	54.808	Ailuropoda_melanoleuca
FBgn0017550	Rga	55	52.609	ENSACIG00000020740	cnot2	56	56.716	Amphilophus_citrinellus
FBgn0017550	Rga	51	55.072	ENSACIG00000007480	CNOT2	66	55.072	Amphilophus_citrinellus
FBgn0017550	Rga	54	52.174	ENSAOCG00000022167	cnot2	52	56.219	Amphiprion_ocellaris
FBgn0017550	Rga	59	55.072	ENSAPEG00000024152	CNOT2	66	55.072	Amphiprion_percula
FBgn0017550	Rga	54	52.174	ENSAPEG00000011343	cnot2	52	56.219	Amphiprion_percula
FBgn0017550	Rga	54	52.609	ENSATEG00000018641	cnot2	52	56.219	Anabas_testudineus
FBgn0017550	Rga	59	55.072	ENSATEG00000023619	CNOT2	50	55.072	Anabas_testudineus
FBgn0017550	Rga	59	52.381	ENSAPLG00000012657	CNOT2	53	54.808	Anas_platyrhynchos
FBgn0017550	Rga	59	51.948	ENSANAG00000024330	CNOT2	66	54.808	Aotus_nancymaae
FBgn0017550	Rga	55	55.072	ENSACLG00000008724	CNOT2	52	55.072	Astatotilapia_calliptera
FBgn0017550	Rga	50	56.716	ENSACLG00000004020	cnot2	70	56.716	Astatotilapia_calliptera
FBgn0017550	Rga	55	54.808	ENSAMXG00000000972	cnot2	53	54.545	Astyanax_mexicanus
FBgn0017550	Rga	59	51.948	ENSBTAG00000003748	CNOT2	69	54.808	Bos_taurus
FBgn0017550	Rga	59	51.948	ENSCAFG00000000441	CNOT2	51	54.808	Canis_familiaris
FBgn0017550	Rga	59	51.948	ENSCAFG00020016849	CNOT2	51	54.808	Canis_lupus_dingo
FBgn0017550	Rga	55	54.808	ENSCHIG00000021610	CNOT2	52	54.808	Capra_hircus
FBgn0017550	Rga	79	51.948	ENSTSYG00000012927	CNOT2	69	54.808	Carlito_syrichta
FBgn0017550	Rga	57	39.823	ENSCAPG00000012192	CNOT2	50	47.222	Cavia_aperea
FBgn0017550	Rga	59	46.809	ENSCPOG00000004756	CNOT2	52	49.057	Cavia_porcellus
FBgn0017550	Rga	79	51.948	ENSCCAG00000033920	CNOT2	70	54.808	Cebus_capucinus
FBgn0017550	Rga	76	49.765	ENSCATG00000036994	CNOT2	96	55.738	Cercocebus_atys
FBgn0017550	Rga	79	51.948	ENSCLAG00000014354	CNOT2	61	54.808	Chinchilla_lanigera
FBgn0017550	Rga	59	51.948	ENSCSAG00000004177	CNOT2	51	54.808	Chlorocebus_sabaeus
FBgn0017550	Rga	77	52.340	ENSCPBG00000013399	CNOT2	54	54.808	Chrysemys_picta_bellii
FBgn0017550	Rga	59	51.948	ENSCANG00000037683	CNOT2	69	50.000	Colobus_angolensis_palliatus
FBgn0017550	Rga	59	51.948	ENSCGRG00001016595	Cnot2	56	54.808	Cricetulus_griseus_chok1gshd
FBgn0017550	Rga	59	51.948	ENSCGRG00000001043	Cnot2	66	54.808	Cricetulus_griseus_crigri
FBgn0017550	Rga	50	55.224	ENSCSEG00000015529	cnot2	56	55.224	Cynoglossus_semilaevis
FBgn0017550	Rga	56	57.979	ENSCSEG00000020129	-	65	48.792	Cynoglossus_semilaevis
FBgn0017550	Rga	59	52.381	ENSCVAG00000019882	CNOT2	67	55.072	Cyprinodon_variegatus
FBgn0017550	Rga	61	54.148	ENSDARG00000061802	cnot2	53	55.024	Danio_rerio
FBgn0017550	Rga	59	51.502	ENSDNOG00000019444	CNOT2	51	54.286	Dasypus_novemcinctus
FBgn0017550	Rga	79	51.948	ENSDORG00000011201	Cnot2	61	54.808	Dipodomys_ordii
FBgn0017550	Rga	59	51.515	ENSETEG00000007655	CNOT2	51	54.327	Echinops_telfairi
FBgn0017550	Rga	58	53.043	ENSEASG00005008113	CNOT2	69	56.039	Equus_asinus_asinus
FBgn0017550	Rga	58	53.043	ENSECAG00000013864	CNOT2	50	58.602	Equus_caballus
FBgn0017550	Rga	59	52.381	ENSELUG00000012055	CNOT2	53	54.854	Esox_lucius
FBgn0017550	Rga	59	51.948	ENSFCAG00000024278	CNOT2	96	55.738	Felis_catus
FBgn0017550	Rga	51	54.808	ENSFALG00000010251	CNOT2	53	54.808	Ficedula_albicollis
FBgn0017550	Rga	75	54.808	ENSFDAG00000008421	CNOT2	61	54.808	Fukomys_damarensis
FBgn0017550	Rga	50	56.219	ENSFHEG00000009600	cnot2	52	56.219	Fundulus_heteroclitus
FBgn0017550	Rga	50	55.721	ENSFHEG00000012921	-	51	59.341	Fundulus_heteroclitus
FBgn0017550	Rga	62	55.172	ENSGMOG00000016382	cnot2	52	55.172	Gadus_morhua
FBgn0017550	Rga	59	52.381	ENSGALG00000010042	CNOT2	53	54.808	Gallus_gallus
FBgn0017550	Rga	57	52.381	ENSGAFG00000018811	-	59	55.072	Gambusia_affinis
FBgn0017550	Rga	53	55.556	ENSGACG00000015711	-	53	55.556	Gasterosteus_aculeatus
FBgn0017550	Rga	58	55.665	ENSGACG00000013517	cnot2	52	55.665	Gasterosteus_aculeatus
FBgn0017550	Rga	57	53.478	ENSGAGG00000025593	CNOT2	53	54.808	Gopherus_agassizii
FBgn0017550	Rga	79	51.948	ENSGGOG00000027402	CNOT2	90	46.341	Gorilla_gorilla
FBgn0017550	Rga	50	56.716	ENSHBUG00000000166	cnot2	52	56.716	Haplochromis_burtoni
FBgn0017550	Rga	55	55.072	ENSHBUG00000016226	CNOT2	52	55.072	Haplochromis_burtoni
FBgn0017550	Rga	79	51.948	ENSHGLG00000007294	CNOT2	61	54.808	Heterocephalus_glaber_female
FBgn0017550	Rga	79	51.948	ENSHGLG00100014317	CNOT2	61	54.808	Heterocephalus_glaber_male
FBgn0017550	Rga	55	54.808	ENSIPUG00000018563	cnot2	53	54.545	Ictalurus_punctatus
FBgn0017550	Rga	54	54.854	ENSIPUG00000016424	CNOT2	50	54.854	Ictalurus_punctatus
FBgn0017550	Rga	55	54.808	ENSSTOG00000011114	CNOT2	56	54.808	Ictidomys_tridecemlineatus
FBgn0017550	Rga	59	51.948	ENSJJAG00000021519	Cnot2	56	54.808	Jaculus_jaculus
FBgn0017550	Rga	51	55.072	ENSKMAG00000008167	-	51	55.072	Kryptolebias_marmoratus
FBgn0017550	Rga	63	49.174	ENSLBEG00000004046	cnot2	51	55.721	Labrus_bergylta
FBgn0017550	Rga	59	55.072	ENSLBEG00000014428	-	56	55.072	Labrus_bergylta
FBgn0017550	Rga	54	54.327	ENSLACG00000007016	CNOT2	53	54.327	Latimeria_chalumnae
FBgn0017550	Rga	50	55.340	ENSLOCG00000016216	cnot2	52	55.340	Lepisosteus_oculatus
FBgn0017550	Rga	59	51.948	ENSLAFG00000004789	CNOT2	51	54.808	Loxodonta_africana
FBgn0017550	Rga	59	51.948	ENSMFAG00000034373	CNOT2	70	54.808	Macaca_fascicularis
FBgn0017550	Rga	59	51.948	ENSMMUG00000014853	CNOT2	69	54.808	Macaca_mulatta
FBgn0017550	Rga	59	51.948	ENSMNEG00000045426	CNOT2	96	55.738	Macaca_nemestrina
FBgn0017550	Rga	76	49.765	ENSMLEG00000041145	CNOT2	70	54.808	Mandrillus_leucophaeus
FBgn0017550	Rga	54	51.739	ENSMAMG00000002615	cnot2	52	55.721	Mastacembelus_armatus
FBgn0017550	Rga	59	55.072	ENSMAMG00000019519	CNOT2	69	55.072	Mastacembelus_armatus
FBgn0017550	Rga	50	56.716	ENSMZEG00005017275	cnot2	70	56.716	Maylandia_zebra
FBgn0017550	Rga	55	55.072	ENSMZEG00005016159	CNOT2	52	55.072	Maylandia_zebra
FBgn0017550	Rga	79	51.948	ENSMAUG00000012049	Cnot2	61	54.808	Mesocricetus_auratus
FBgn0017550	Rga	59	51.948	ENSMICG00000001644	CNOT2	70	54.808	Microcebus_murinus
FBgn0017550	Rga	59	51.948	ENSMOCG00000011255	Cnot2	61	54.808	Microtus_ochrogaster
FBgn0017550	Rga	59	54.589	ENSMMOG00000006017	CNOT2	55	54.589	Mola_mola
FBgn0017550	Rga	54	52.174	ENSMMOG00000018877	cnot2	52	55.721	Mola_mola
FBgn0017550	Rga	59	52.381	ENSMODG00000020387	CNOT2	50	54.808	Monodelphis_domestica
FBgn0017550	Rga	59	55.072	ENSMALG00000008200	CNOT2	55	51.402	Monopterus_albus
FBgn0017550	Rga	54	52.174	ENSMALG00000013354	cnot2	52	55.721	Monopterus_albus
FBgn0017550	Rga	51	54.808	MGP_CAROLIEiJ_G0015822	Cnot2	56	54.808	Mus_caroli
FBgn0017550	Rga	71	54.808	ENSMUSG00000020166	Cnot2	61	54.808	Mus_musculus
FBgn0017550	Rga	51	55.288	MGP_PahariEiJ_G0031265	Cnot2	56	55.288	Mus_pahari
FBgn0017550	Rga	51	54.808	MGP_SPRETEiJ_G0016644	Cnot2	56	54.808	Mus_spretus
FBgn0017550	Rga	59	51.948	ENSMPUG00000017494	CNOT2	51	54.808	Mustela_putorius_furo
FBgn0017550	Rga	59	51.948	ENSMLUG00000012301	CNOT2	51	54.808	Myotis_lucifugus
FBgn0017550	Rga	71	54.808	ENSNGAG00000020842	Cnot2	61	54.808	Nannospalax_galili
FBgn0017550	Rga	55	55.072	ENSNBRG00000015257	CNOT2	52	55.072	Neolamprologus_brichardi
FBgn0017550	Rga	79	51.948	ENSNLEG00000004064	CNOT2	70	54.808	Nomascus_leucogenys
FBgn0017550	Rga	59	51.948	ENSODEG00000004532	CNOT2	51	54.808	Octodon_degus
FBgn0017550	Rga	50	56.716	ENSONIG00000010467	cnot2	52	56.716	Oreochromis_niloticus
FBgn0017550	Rga	55	55.072	ENSONIG00000009907	CNOT2	50	55.072	Oreochromis_niloticus
FBgn0017550	Rga	59	52.381	ENSOANG00000005959	CNOT2	51	54.808	Ornithorhynchus_anatinus
FBgn0017550	Rga	58	51.948	ENSOCUG00000009951	CNOT2	50	54.808	Oryctolagus_cuniculus
FBgn0017550	Rga	55	54.589	ENSORLG00000017361	CNOT2	56	54.589	Oryzias_latipes
FBgn0017550	Rga	74	52.381	ENSORLG00000016454	cnot2	56	55.446	Oryzias_latipes
FBgn0017550	Rga	66	58.791	ENSORLG00020009002	cnot2	55	58.791	Oryzias_latipes_hni
FBgn0017550	Rga	55	54.589	ENSORLG00020005328	CNOT2	56	54.589	Oryzias_latipes_hni
FBgn0017550	Rga	55	54.589	ENSORLG00015004707	CNOT2	56	54.589	Oryzias_latipes_hsok
FBgn0017550	Rga	65	59.016	ENSORLG00015022502	cnot2	56	59.016	Oryzias_latipes_hsok
FBgn0017550	Rga	54	51.739	ENSOMEG00000023230	cnot2	52	54.950	Oryzias_melastigma
FBgn0017550	Rga	55	54.589	ENSOMEG00000022902	CNOT2	70	54.589	Oryzias_melastigma
FBgn0017550	Rga	59	51.948	ENSOGAG00000008391	-	51	54.808	Otolemur_garnettii
FBgn0017550	Rga	55	54.808	ENSOARG00000020211	CNOT2	51	54.808	Ovis_aries
FBgn0017550	Rga	59	51.948	ENSPPAG00000042482	CNOT2	70	54.808	Pan_paniscus
FBgn0017550	Rga	59	51.948	ENSPPRG00000004080	CNOT2	96	55.738	Panthera_pardus
FBgn0017550	Rga	59	51.948	ENSPTIG00000007082	CNOT2	56	54.808	Panthera_tigris_altaica
FBgn0017550	Rga	59	51.948	ENSPTRG00000005216	CNOT2	70	54.808	Pan_troglodytes
FBgn0017550	Rga	76	49.765	ENSPANG00000018112	CNOT2	70	54.808	Papio_anubis
FBgn0017550	Rga	58	52.381	ENSPKIG00000022871	CNOT2	53	54.854	Paramormyrops_kingsleyae
FBgn0017550	Rga	63	52.814	ENSPKIG00000022757	cnot2	53	55.340	Paramormyrops_kingsleyae
FBgn0017550	Rga	57	52.381	ENSPSIG00000015414	CNOT2	53	54.808	Pelodiscus_sinensis
FBgn0017550	Rga	66	51.046	ENSPMGG00000016559	CNOT2	69	55.769	Periophthalmus_magnuspinnatus
FBgn0017550	Rga	79	51.948	ENSPEMG00000023296	Cnot2	61	54.808	Peromyscus_maniculatus_bairdii
FBgn0017550	Rga	59	48.347	ENSPMAG00000002220	cnot2	52	54.229	Petromyzon_marinus
FBgn0017550	Rga	59	52.381	ENSPCIG00000010670	CNOT2	52	54.808	Phascolarctos_cinereus
FBgn0017550	Rga	57	52.381	ENSPFOG00000015440	-	52	55.072	Poecilia_formosa
FBgn0017550	Rga	57	52.381	ENSPLAG00000007644	-	53	55.072	Poecilia_latipinna
FBgn0017550	Rga	57	52.381	ENSPMEG00000023331	-	66	55.072	Poecilia_mexicana
FBgn0017550	Rga	59	52.381	ENSPREG00000006034	CNOT2	51	55.072	Poecilia_reticulata
FBgn0017550	Rga	52	56.219	ENSPREG00000020804	cnot2	52	56.219	Poecilia_reticulata
FBgn0017550	Rga	76	54.460	ENSPPYG00000004765	CNOT2	56	57.895	Pongo_abelii
FBgn0017550	Rga	79	51.948	ENSPCAG00000000962	CNOT2	51	54.808	Procavia_capensis
FBgn0017550	Rga	79	51.948	ENSPCOG00000028865	CNOT2	71	54.808	Propithecus_coquereli
FBgn0017550	Rga	50	56.716	ENSPNYG00000021545	cnot2	52	56.716	Pundamilia_nyererei
FBgn0017550	Rga	55	55.072	ENSPNYG00000009888	CNOT2	52	55.072	Pundamilia_nyererei
FBgn0017550	Rga	53	54.327	ENSPNAG00000021540	CNOT2	52	54.327	Pygocentrus_nattereri
FBgn0017550	Rga	55	54.808	ENSPNAG00000015107	cnot2	53	54.545	Pygocentrus_nattereri
FBgn0017550	Rga	67	57.979	ENSRNOG00000004909	Cnot2	60	57.979	Rattus_norvegicus
FBgn0017550	Rga	59	51.948	ENSRBIG00000039989	CNOT2	96	55.738	Rhinopithecus_bieti
FBgn0017550	Rga	59	51.948	ENSRROG00000042572	CNOT2	69	54.808	Rhinopithecus_roxellana
FBgn0017550	Rga	79	51.948	ENSSBOG00000026423	CNOT2	69	54.808	Saimiri_boliviensis_boliviensis
FBgn0017550	Rga	59	52.381	ENSSHAG00000005001	CNOT2	51	54.808	Sarcophilus_harrisii
FBgn0017550	Rga	61	53.304	ENSSFOG00015005243	cnot2	53	55.340	Scleropages_formosus
FBgn0017550	Rga	59	52.814	ENSSFOG00015017789	CNOT2	54	55.340	Scleropages_formosus
FBgn0017550	Rga	59	52.174	ENSSMAG00000009857	cnot2	52	56.219	Scophthalmus_maximus
FBgn0017550	Rga	55	55.556	ENSSMAG00000006667	CNOT2	52	55.556	Scophthalmus_maximus
FBgn0017550	Rga	54	52.174	ENSSDUG00000020166	cnot2	52	56.219	Seriola_dumerili
FBgn0017550	Rga	59	55.072	ENSSDUG00000013716	CNOT2	67	55.072	Seriola_dumerili
FBgn0017550	Rga	56	58.511	ENSSLDG00000009614	-	52	55.072	Seriola_lalandi_dorsalis
FBgn0017550	Rga	54	52.174	ENSSLDG00000010952	cnot2	52	56.219	Seriola_lalandi_dorsalis
FBgn0017550	Rga	79	51.948	ENSSARG00000001038	CNOT2	51	54.808	Sorex_araneus
FBgn0017550	Rga	54	52.174	ENSSPAG00000006784	cnot2	60	56.219	Stegastes_partitus
FBgn0017550	Rga	59	55.072	ENSSPAG00000013982	-	68	55.072	Stegastes_partitus
FBgn0017550	Rga	59	52.381	ENSSSCG00000000502	CNOT2	69	54.808	Sus_scrofa
FBgn0017550	Rga	51	54.808	ENSTGUG00000007018	CNOT2	53	54.808	Taeniopygia_guttata
FBgn0017550	Rga	51	52.609	ENSTRUG00000002924	cnot2	52	56.219	Takifugu_rubripes
FBgn0017550	Rga	54	53.043	ENSTNIG00000008354	cnot2	50	56.716	Tetraodon_nigroviridis
FBgn0017550	Rga	51	54.808	ENSTTRG00000004829	CNOT2	51	54.808	Tursiops_truncatus
FBgn0017550	Rga	59	51.948	ENSUAMG00000016753	CNOT2	53	54.808	Ursus_americanus
FBgn0017550	Rga	59	51.948	ENSUMAG00000020863	CNOT2	69	54.808	Ursus_maritimus
FBgn0017550	Rga	59	48.485	ENSVPAG00000006870	CNOT2	52	50.962	Vicugna_pacos
FBgn0017550	Rga	75	54.460	ENSVVUG00000008840	CNOT2	52	57.895	Vulpes_vulpes
FBgn0017550	Rga	57	52.381	ENSXETG00000011385	cnot2	71	54.808	Xenopus_tropicalis
FBgn0017550	Rga	50	56.219	ENSXCOG00000002160	cnot2	56	56.219	Xiphophorus_couchianus
FBgn0017550	Rga	54	52.381	ENSXCOG00000013026	CNOT2	73	55.072	Xiphophorus_couchianus
FBgn0017550	Rga	57	52.381	ENSXMAG00000010366	CNOT2	69	55.072	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0004535	poly(A)-specific ribonuclease activity	20504953.	IDA	Function
GO:0005515	protein binding	21981923.30279526.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	9475742.	NAS	Component
GO:0005737	cytoplasm	20504953.	IDA	Component
GO:0006351	transcription, DNA-templated	9475742.	IMP	Process
GO:0006355	regulation of transcription, DNA-templated	9475742.	IMP	Process
GO:0006402	mRNA catabolic process	23303381.	IDA	Process
GO:0017148	negative regulation of translation	21873635.	IBA	Process
GO:0017148	negative regulation of translation	23303381.	IDA	Process
GO:0030014	CCR4-NOT complex	15215893.20504953.	IDA	Component
GO:0030015	CCR4-NOT core complex	21873635.	IBA	Component