EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0019890 (Gene tree)
Gene ID: 34804
Gene Symbol: Smg5
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 5834 bases
Position: chr2L:13898828-13904661
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0080138	EST1	PF10374.9	1.7e-16	1	1
FBpp0080139	EST1	PF10374.9	1.7e-16	1	1
FBpp0310261	EST1	PF10374.9	1.7e-16	1	1
FBpp0080138	EST1_DNA_bind	PF10373.9	3.5e-37	1	1
FBpp0080139	EST1_DNA_bind	PF10373.9	3.5e-37	1	1
FBpp0310261	EST1_DNA_bind	PF10373.9	3.5e-37	1	1
FBpp0080138	PIN_4	PF13638.6	5.9e-07	1	1
FBpp0080139	PIN_4	PF13638.6	5.9e-07	1	1
FBpp0310261	PIN_4	PF13638.6	5.9e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0080562	-	4809	-	FBpp0080139	1177 (aa)	-	Q9V414
FBtr0343669	-	4102	-	FBpp0310261	1177 (aa)	-	Q9V414
FBtr0080561	-	4021	-	FBpp0080138	1177 (aa)	-	Q8T080

Gene Model

Click here to download FBgn0019890's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0019890's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0019890	Smg5	62	35.484	ENSG00000198952	SMG5	66	35.484	Homo_sapiens
FBgn0019890	Smg5	62	36.774	ENSAMEG00000014458	SMG5	69	36.774	Ailuropoda_melanoleuca
FBgn0019890	Smg5	50	30.890	ENSAPEG00000022949	smg5	59	30.890	Amphiprion_percula
FBgn0019890	Smg5	62	35.484	ENSANAG00000032899	SMG5	66	35.484	Aotus_nancymaae
FBgn0019890	Smg5	63	32.484	ENSACLG00000009311	smg5	54	32.484	Astatotilapia_calliptera
FBgn0019890	Smg5	62	36.129	ENSBTAG00000009435	SMG5	66	36.129	Bos_taurus
FBgn0019890	Smg5	58	41.837	ENSCJAG00000005684	SMG5	63	41.837	Callithrix_jacchus
FBgn0019890	Smg5	62	35.256	ENSCAFG00000016839	SMG5	68	35.256	Canis_familiaris
FBgn0019890	Smg5	62	35.256	ENSCAFG00020006061	SMG5	68	35.256	Canis_lupus_dingo
FBgn0019890	Smg5	62	36.129	ENSCHIG00000007709	SMG5	66	36.129	Capra_hircus
FBgn0019890	Smg5	62	36.129	ENSTSYG00000004099	SMG5	66	36.129	Carlito_syrichta
FBgn0019890	Smg5	62	34.194	ENSCPOG00000015696	SMG5	66	34.868	Cavia_porcellus
FBgn0019890	Smg5	62	35.484	ENSCCAG00000027409	SMG5	66	35.484	Cebus_capucinus
FBgn0019890	Smg5	62	35.484	ENSCATG00000030539	SMG5	66	35.484	Cercocebus_atys
FBgn0019890	Smg5	62	35.484	ENSCLAG00000003983	SMG5	66	35.484	Chinchilla_lanigera
FBgn0019890	Smg5	62	35.484	ENSCSAG00000002120	SMG5	66	35.484	Chlorocebus_sabaeus
FBgn0019890	Smg5	56	36.765	ENSCPBG00000025848	SMG5	88	36.765	Chrysemys_picta_bellii
FBgn0019890	Smg5	62	33.962	ENSCGRG00001006336	Smg5	75	33.962	Cricetulus_griseus_chok1gshd
FBgn0019890	Smg5	62	33.962	ENSCGRG00000005111	Smg5	76	33.962	Cricetulus_griseus_crigri
FBgn0019890	Smg5	52	30.973	ENSCSEG00000014220	smg5	60	30.973	Cynoglossus_semilaevis
FBgn0019890	Smg5	72	31.414	ENSDARG00000041481	smg5	71	31.414	Danio_rerio
FBgn0019890	Smg5	62	35.526	ENSDORG00000010382	Smg5	66	35.526	Dipodomys_ordii
FBgn0019890	Smg5	62	35.484	ENSECAG00000001389	SMG5	66	35.484	Equus_caballus
FBgn0019890	Smg5	55	30.500	ENSEEUG00000012690	SMG5	59	30.500	Erinaceus_europaeus
FBgn0019890	Smg5	63	33.544	ENSELUG00000012585	smg5	66	31.973	Esox_lucius
FBgn0019890	Smg5	62	35.256	ENSFCAG00000011783	SMG5	67	35.256	Felis_catus
FBgn0019890	Smg5	64	31.771	ENSFDAG00000017388	SMG5	71	31.771	Fukomys_damarensis
FBgn0019890	Smg5	82	35.503	ENSGALG00000029918	-	67	35.503	Gallus_gallus
FBgn0019890	Smg5	61	36.765	ENSGAGG00000016131	SMG5	88	36.765	Gopherus_agassizii
FBgn0019890	Smg5	62	35.484	ENSGGOG00000010932	SMG5	66	35.484	Gorilla_gorilla
FBgn0019890	Smg5	65	30.000	ENSHBUG00000008654	smg5	53	32.484	Haplochromis_burtoni
FBgn0019890	Smg5	65	31.915	ENSHGLG00000019152	SMG5	70	31.915	Heterocephalus_glaber_female
FBgn0019890	Smg5	60	34.127	ENSHGLG00100015948	SMG5	68	42.222	Heterocephalus_glaber_male
FBgn0019890	Smg5	65	31.937	ENSSTOG00000001780	SMG5	71	31.937	Ictidomys_tridecemlineatus
FBgn0019890	Smg5	62	34.615	ENSJJAG00000022763	Smg5	70	34.615	Jaculus_jaculus
FBgn0019890	Smg5	62	36.129	ENSLAFG00000006241	SMG5	67	36.129	Loxodonta_africana
FBgn0019890	Smg5	62	35.443	ENSMFAG00000045357	SMG5	66	35.256	Macaca_fascicularis
FBgn0019890	Smg5	62	35.443	ENSMMUG00000000090	SMG5	66	35.256	Macaca_mulatta
FBgn0019890	Smg5	62	35.443	ENSMNEG00000044425	SMG5	66	35.256	Macaca_nemestrina
FBgn0019890	Smg5	66	30.256	ENSMAUG00000010381	Smg5	71	30.256	Mesocricetus_auratus
FBgn0019890	Smg5	62	35.484	ENSMICG00000002257	SMG5	66	35.484	Microcebus_murinus
FBgn0019890	Smg5	57	40.000	ENSMOCG00000016590	Smg5	61	40.000	Microtus_ochrogaster
FBgn0019890	Smg5	62	33.962	MGP_CAROLIEiJ_G0025163	Smg5	75	33.962	Mus_caroli
FBgn0019890	Smg5	62	33.962	ENSMUSG00000001415	Smg5	75	33.962	Mus_musculus
FBgn0019890	Smg5	62	33.962	MGP_PahariEiJ_G0026606	Smg5	66	33.962	Mus_pahari
FBgn0019890	Smg5	62	33.962	MGP_SPRETEiJ_G0026104	Smg5	75	33.962	Mus_spretus
FBgn0019890	Smg5	58	36.129	ENSMPUG00000004546	SMG5	67	36.129	Mustela_putorius_furo
FBgn0019890	Smg5	65	31.959	ENSMLUG00000008518	SMG5	70	31.771	Myotis_lucifugus
FBgn0019890	Smg5	65	30.526	ENSNGAG00000020706	Smg5	74	30.526	Nannospalax_galili
FBgn0019890	Smg5	62	35.484	ENSNLEG00000012439	SMG5	66	35.484	Nomascus_leucogenys
FBgn0019890	Smg5	60	33.588	ENSMEUG00000012834	SMG5	87	33.588	Notamacropus_eugenii
FBgn0019890	Smg5	62	35.484	ENSOPRG00000009152	SMG5	66	35.484	Ochotona_princeps
FBgn0019890	Smg5	65	31.937	ENSODEG00000012237	SMG5	71	31.937	Octodon_degus
FBgn0019890	Smg5	63	32.484	ENSONIG00000008632	smg5	59	32.484	Oreochromis_niloticus
FBgn0019890	Smg5	62	36.129	ENSOARG00000005778	SMG5	66	36.129	Ovis_aries
FBgn0019890	Smg5	62	35.484	ENSPPAG00000011996	SMG5	66	35.484	Pan_paniscus
FBgn0019890	Smg5	62	35.256	ENSPPRG00000011901	SMG5	69	35.256	Panthera_pardus
FBgn0019890	Smg5	62	35.484	ENSPTRG00000023925	SMG5	66	35.484	Pan_troglodytes
FBgn0019890	Smg5	62	35.484	ENSPTRG00000049282	-	66	35.484	Pan_troglodytes
FBgn0019890	Smg5	62	35.484	ENSPANG00000011201	SMG5	66	35.484	Papio_anubis
FBgn0019890	Smg5	63	32.353	ENSPSIG00000015198	SMG5	89	32.353	Pelodiscus_sinensis
FBgn0019890	Smg5	60	38.168	ENSPCIG00000018938	SMG5	79	38.168	Phascolarctos_cinereus
FBgn0019890	Smg5	62	35.484	ENSPPYG00000000723	SMG5	66	35.484	Pongo_abelii
FBgn0019890	Smg5	62	35.484	ENSPCOG00000004741	SMG5	66	35.484	Propithecus_coquereli
FBgn0019890	Smg5	56	35.897	ENSPVAG00000016748	SMG5	58	35.897	Pteropus_vampyrus
FBgn0019890	Smg5	65	32.124	ENSPNAG00000028363	smg5	64	32.124	Pygocentrus_nattereri
FBgn0019890	Smg5	62	33.962	ENSRNOG00000019590	Smg5	75	33.962	Rattus_norvegicus
FBgn0019890	Smg5	62	35.484	ENSRBIG00000027428	SMG5	66	35.484	Rhinopithecus_bieti
FBgn0019890	Smg5	62	35.484	ENSRROG00000030035	SMG5	66	35.484	Rhinopithecus_roxellana
FBgn0019890	Smg5	62	34.839	ENSSBOG00000033339	SMG5	66	34.839	Saimiri_boliviensis_boliviensis
FBgn0019890	Smg5	60	37.037	ENSSHAG00000014163	SMG5	64	37.037	Sarcophilus_harrisii
FBgn0019890	Smg5	53	41.935	ENSSPUG00000002260	SMG5	58	41.935	Sphenodon_punctatus
FBgn0019890	Smg5	65	30.890	ENSSPAG00000014266	smg5	57	30.890	Stegastes_partitus
FBgn0019890	Smg5	62	35.484	ENSSSCG00000006490	-	66	35.484	Sus_scrofa
FBgn0019890	Smg5	59	33.136	ENSTGUG00000003748	-	64	37.778	Taeniopygia_guttata
FBgn0019890	Smg5	59	30.968	ENSTTRG00000001401	SMG5	62	30.968	Tursiops_truncatus
FBgn0019890	Smg5	62	36.774	ENSUAMG00000013721	SMG5	68	36.774	Ursus_americanus
FBgn0019890	Smg5	62	35.256	ENSVVUG00000005887	SMG5	68	35.256	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	12881430.16177138.	IMP	Process
GO:0005697	telomerase holoenzyme complex	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0007004	telomere maintenance via telomerase	21873635.	IBA	Process
GO:0016246	RNA interference	16177138.	IMP	Process
GO:0032210	regulation of telomere maintenance via telomerase	21873635.	IBA	Process
GO:0035195	gene silencing by miRNA	16177138.	IMP	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0070034	telomerase RNA binding	21873635.	IBA	Function