EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0020261 (Gene tree)
Gene ID: 32935
Gene Symbol: pcm
Alias: -
Full Name: pacman
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 6253 bases
Position: chrX:19485759-19492011
Accession: FBgn0020261
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0074553	XRN_N	PF03159.18	1.4e-93	1	1
FBpp0291292	XRN_N	PF03159.18	1.4e-93	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0074784	-	5260	-	FBpp0074553	1612 (aa)	-	Q9VWI1
FBtr0302082	-	5384	-	FBpp0291292	1613 (aa)	-	E1JJR3

Gene Model

Click here to download FBgn0020261's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0020261's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0020261	pcm	76	39.846	ENSG00000114127	XRN1	98	67.619	Homo_sapiens
FBgn0020261	pcm	71	41.548	ENSAPOG00000000622	xrn1	94	51.277	Acanthochromis_polyacanthus
FBgn0020261	pcm	72	40.538	ENSAMEG00000012538	XRN1	73	39.457	Ailuropoda_melanoleuca
FBgn0020261	pcm	71	40.579	ENSACIG00000001057	xrn1	73	40.579	Amphilophus_citrinellus
FBgn0020261	pcm	71	41.561	ENSAOCG00000014097	xrn1	95	50.518	Amphiprion_ocellaris
FBgn0020261	pcm	78	39.235	ENSAPEG00000006620	xrn1	80	39.235	Amphiprion_percula
FBgn0020261	pcm	78	38.303	ENSATEG00000009752	xrn1	81	38.073	Anabas_testudineus
FBgn0020261	pcm	73	39.433	ENSAPLG00000004905	XRN1	71	39.676	Anas_platyrhynchos
FBgn0020261	pcm	72	39.967	ENSACAG00000004985	XRN1	67	40.263	Anolis_carolinensis
FBgn0020261	pcm	76	40.077	ENSANAG00000029013	XRN1	99	42.443	Aotus_nancymaae
FBgn0020261	pcm	78	38.918	ENSACLG00000004806	xrn1	75	38.918	Astatotilapia_calliptera
FBgn0020261	pcm	72	39.489	ENSAMXG00000019370	xrn1	95	69.903	Astyanax_mexicanus
FBgn0020261	pcm	72	40.954	ENSBTAG00000011524	XRN1	75	39.445	Bos_taurus
FBgn0020261	pcm	72	35.334	WBGene00012730	xrn-1	76	55.496	Caenorhabditis_elegans
FBgn0020261	pcm	76	39.846	ENSCJAG00000001872	XRN1	77	39.938	Callithrix_jacchus
FBgn0020261	pcm	76	39.938	ENSCAFG00000007783	XRN1	74	40.109	Canis_familiaris
FBgn0020261	pcm	76	39.614	ENSCAFG00020009120	XRN1	96	52.769	Canis_lupus_dingo
FBgn0020261	pcm	72	40.872	ENSCHIG00000019192	XRN1	74	39.368	Capra_hircus
FBgn0020261	pcm	72	40.965	ENSTSYG00000002705	XRN1	75	39.627	Carlito_syrichta
FBgn0020261	pcm	56	43.101	ENSCAPG00000004604	-	99	43.189	Cavia_aperea
FBgn0020261	pcm	76	39.923	ENSCCAG00000034800	XRN1	94	54.958	Cebus_capucinus
FBgn0020261	pcm	76	39.768	ENSCATG00000041794	XRN1	75	39.860	Cercocebus_atys
FBgn0020261	pcm	76	40.124	ENSCLAG00000001451	XRN1	94	55.294	Chinchilla_lanigera
FBgn0020261	pcm	76	39.799	ENSCSAG00000011265	XRN1	74	39.891	Chlorocebus_sabaeus
FBgn0020261	pcm	59	41.667	ENSCSAVG00000008584	-	76	41.540	Ciona_savignyi
FBgn0020261	pcm	76	39.691	ENSCANG00000037495	XRN1	94	54.958	Colobus_angolensis_palliatus
FBgn0020261	pcm	76	39.846	ENSCGRG00001019411	Xrn1	94	55.630	Cricetulus_griseus_chok1gshd
FBgn0020261	pcm	76	39.846	ENSCGRG00000012464	Xrn1	94	55.630	Cricetulus_griseus_crigri
FBgn0020261	pcm	67	41.607	ENSCSEG00000021285	xrn1	94	70.192	Cynoglossus_semilaevis
FBgn0020261	pcm	67	42.427	ENSCVAG00000013089	xrn1	99	42.263	Cyprinodon_variegatus
FBgn0020261	pcm	71	40.989	ENSDARG00000091652	xrn1	98	50.106	Danio_rerio
FBgn0020261	pcm	72	40.707	ENSDORG00000013833	Xrn1	72	40.207	Dipodomys_ordii
FBgn0020261	pcm	76	39.923	ENSEASG00005002687	XRN1	96	53.997	Equus_asinus_asinus
FBgn0020261	pcm	76	40.000	ENSECAG00000008301	XRN1	74	40.249	Equus_caballus
FBgn0020261	pcm	82	37.482	ENSELUG00000000169	xrn1	76	38.749	Esox_lucius
FBgn0020261	pcm	76	36.862	ENSFCAG00000027589	XRN1	98	53.982	Felis_catus
FBgn0020261	pcm	72	40.313	ENSFALG00000007021	XRN1	67	40.643	Ficedula_albicollis
FBgn0020261	pcm	76	39.782	ENSFDAG00000020494	XRN1	96	53.997	Fukomys_damarensis
FBgn0020261	pcm	67	42.236	ENSGMOG00000006396	xrn1	66	42.059	Gadus_morhua
FBgn0020261	pcm	72	40.939	ENSGALG00000002706	XRN1	67	41.186	Gallus_gallus
FBgn0020261	pcm	72	40.741	ENSGACG00000014328	xrn1	69	40.722	Gasterosteus_aculeatus
FBgn0020261	pcm	74	39.952	ENSGAGG00000017535	XRN1	75	40.174	Gopherus_agassizii
FBgn0020261	pcm	76	39.923	ENSGGOG00000008047	XRN1	75	40.016	Gorilla_gorilla
FBgn0020261	pcm	77	38.567	ENSHBUG00000005908	xrn1	95	49.260	Haplochromis_burtoni
FBgn0020261	pcm	76	39.938	ENSHGLG00000014476	XRN1	94	55.630	Heterocephalus_glaber_female
FBgn0020261	pcm	76	39.938	ENSHGLG00100015130	XRN1	94	55.630	Heterocephalus_glaber_male
FBgn0020261	pcm	72	40.902	ENSHCOG00000014062	xrn1	75	40.820	Hippocampus_comes
FBgn0020261	pcm	72	40.765	ENSIPUG00000015229	xrn1	72	40.701	Ictalurus_punctatus
FBgn0020261	pcm	76	39.923	ENSSTOG00000013552	XRN1	97	53.280	Ictidomys_tridecemlineatus
FBgn0020261	pcm	72	39.672	ENSJJAG00000010863	Xrn1	93	53.427	Jaculus_jaculus
FBgn0020261	pcm	71	42.083	ENSKMAG00000021356	xrn1	95	51.059	Kryptolebias_marmoratus
FBgn0020261	pcm	72	41.225	ENSLBEG00000018656	xrn1	99	69.524	Labrus_bergylta
FBgn0020261	pcm	74	40.157	ENSLACG00000009020	XRN1	71	40.000	Latimeria_chalumnae
FBgn0020261	pcm	74	40.159	ENSLOCG00000007944	xrn1	72	40.080	Lepisosteus_oculatus
FBgn0020261	pcm	62	42.559	ENSLAFG00000015426	XRN1	100	47.994	Loxodonta_africana
FBgn0020261	pcm	76	39.768	ENSMFAG00000032599	XRN1	75	39.860	Macaca_fascicularis
FBgn0020261	pcm	76	39.768	ENSMMUG00000014038	XRN1	75	39.860	Macaca_mulatta
FBgn0020261	pcm	76	39.768	ENSMNEG00000034217	XRN1	75	39.860	Macaca_nemestrina
FBgn0020261	pcm	77	39.662	ENSMAMG00000013219	xrn1	94	52.008	Mastacembelus_armatus
FBgn0020261	pcm	78	38.843	ENSMZEG00005015099	xrn1	75	38.693	Maylandia_zebra
FBgn0020261	pcm	71	39.127	ENSMGAG00000006333	XRN1	71	38.741	Meleagris_gallopavo
FBgn0020261	pcm	76	40.108	ENSMICG00000048948	XRN1	98	67.619	Microcebus_murinus
FBgn0020261	pcm	54	55.294	ENSMOCG00000008665	Xrn1	94	55.294	Microtus_ochrogaster
FBgn0020261	pcm	72	40.857	ENSMODG00000021236	XRN1	70	41.104	Monodelphis_domestica
FBgn0020261	pcm	71	39.525	ENSMALG00000004098	xrn1	69	39.695	Monopterus_albus
FBgn0020261	pcm	76	38.753	MGP_CAROLIEiJ_G0032535	Xrn1	95	68.421	Mus_caroli
FBgn0020261	pcm	76	39.646	ENSMUSG00000032410	Xrn1	95	68.421	Mus_musculus
FBgn0020261	pcm	76	39.522	MGP_PahariEiJ_G0015404	Xrn1	95	68.421	Mus_pahari
FBgn0020261	pcm	76	39.646	MGP_SPRETEiJ_G0033678	Xrn1	95	68.421	Mus_spretus
FBgn0020261	pcm	76	39.722	ENSMPUG00000012040	XRN1	74	39.891	Mustela_putorius_furo
FBgn0020261	pcm	76	40.154	ENSMLUG00000016885	XRN1	73	40.093	Myotis_lucifugus
FBgn0020261	pcm	54	52.534	ENSNGAG00000023964	Xrn1	94	52.534	Nannospalax_galili
FBgn0020261	pcm	76	39.846	ENSNLEG00000004726	XRN1	75	39.938	Nomascus_leucogenys
FBgn0020261	pcm	78	39.213	ENSONIG00000016673	xrn1	85	39.364	Oreochromis_niloticus
FBgn0020261	pcm	66	36.754	ENSOANG00000006735	XRN1	70	36.978	Ornithorhynchus_anatinus
FBgn0020261	pcm	76	39.753	ENSOCUG00000001861	XRN1	73	40.078	Oryctolagus_cuniculus
FBgn0020261	pcm	82	39.571	ENSORLG00000013005	xrn1	75	40.181	Oryzias_latipes
FBgn0020261	pcm	82	39.357	ENSORLG00020005559	xrn1	76	40.030	Oryzias_latipes_hni
FBgn0020261	pcm	72	41.811	ENSORLG00015022523	xrn1	74	42.422	Oryzias_latipes_hsok
FBgn0020261	pcm	72	40.410	ENSOMEG00000015397	xrn1	75	41.176	Oryzias_melastigma
FBgn0020261	pcm	72	39.902	ENSOGAG00000000170	XRN1	70	40.329	Otolemur_garnettii
FBgn0020261	pcm	76	39.363	ENSOARG00000006343	XRN1	75	39.291	Ovis_aries
FBgn0020261	pcm	76	39.846	ENSPPAG00000010180	XRN1	75	39.938	Pan_paniscus
FBgn0020261	pcm	76	39.660	ENSPPRG00000007125	XRN1	75	39.829	Panthera_pardus
FBgn0020261	pcm	76	39.738	ENSPTIG00000021081	XRN1	75	39.907	Panthera_tigris_altaica
FBgn0020261	pcm	76	39.846	ENSPTRG00000015482	XRN1	75	39.938	Pan_troglodytes
FBgn0020261	pcm	76	39.768	ENSPANG00000010638	XRN1	75	39.860	Papio_anubis
FBgn0020261	pcm	72	40.750	ENSPSIG00000018050	XRN1	69	40.853	Pelodiscus_sinensis
FBgn0020261	pcm	56	54.589	ENSPMGG00000002648	xrn1	96	54.589	Periophthalmus_magnuspinnatus
FBgn0020261	pcm	53	55.294	ENSPEMG00000020610	Xrn1	92	55.630	Peromyscus_maniculatus_bairdii
FBgn0020261	pcm	63	59.884	ENSPMAG00000002975	xrn1	90	59.884	Petromyzon_marinus
FBgn0020261	pcm	73	40.850	ENSPCIG00000028735	XRN1	94	53.431	Phascolarctos_cinereus
FBgn0020261	pcm	71	41.722	ENSPFOG00000013932	xrn1	76	41.304	Poecilia_formosa
FBgn0020261	pcm	71	41.345	ENSPLAG00000021653	xrn1	75	41.345	Poecilia_latipinna
FBgn0020261	pcm	71	41.465	ENSPMEG00000003076	xrn1	74	41.549	Poecilia_mexicana
FBgn0020261	pcm	71	41.265	ENSPREG00000021147	xrn1	72	40.794	Poecilia_reticulata
FBgn0020261	pcm	76	39.923	ENSPPYG00000014172	XRN1	74	40.016	Pongo_abelii
FBgn0020261	pcm	61	53.578	ENSPCAG00000005638	XRN1	67	53.945	Procavia_capensis
FBgn0020261	pcm	76	40.340	ENSPCOG00000013089	XRN1	96	53.997	Propithecus_coquereli
FBgn0020261	pcm	69	40.697	ENSPVAG00000016265	XRN1	67	40.804	Pteropus_vampyrus
FBgn0020261	pcm	77	39.226	ENSPNYG00000010570	xrn1	76	39.147	Pundamilia_nyererei
FBgn0020261	pcm	89	34.595	ENSPNAG00000023531	xrn1	71	38.739	Pygocentrus_nattereri
FBgn0020261	pcm	76	39.492	ENSRNOG00000042951	Xrn1	74	39.582	Rattus_norvegicus
FBgn0020261	pcm	76	39.614	ENSRBIG00000041227	XRN1	75	39.860	Rhinopithecus_bieti
FBgn0020261	pcm	70	50.811	YGL173C	XRN1	71	50.811	Saccharomyces_cerevisiae
FBgn0020261	pcm	76	40.000	ENSSBOG00000029561	XRN1	75	40.093	Saimiri_boliviensis_boliviensis
FBgn0020261	pcm	76	38.854	ENSSHAG00000016207	XRN1	75	39.097	Sarcophilus_harrisii
FBgn0020261	pcm	71	42.519	ENSSFOG00015024211	xrn1	71	42.350	Scleropages_formosus
FBgn0020261	pcm	72	40.462	ENSSMAG00000016534	xrn1	75	40.793	Scophthalmus_maximus
FBgn0020261	pcm	71	40.638	ENSSDUG00000010306	xrn1	74	40.722	Seriola_dumerili
FBgn0020261	pcm	80	38.719	ENSSLDG00000021543	xrn1	74	41.107	Seriola_lalandi_dorsalis
FBgn0020261	pcm	58	40.061	ENSSARG00000007741	-	71	40.164	Sorex_araneus
FBgn0020261	pcm	74	39.520	ENSTGUG00000008498	XRN1	72	39.762	Taeniopygia_guttata
FBgn0020261	pcm	71	42.419	ENSTRUG00000004895	xrn1	96	51.709	Takifugu_rubripes
FBgn0020261	pcm	72	40.308	ENSTNIG00000017615	xrn1	72	40.427	Tetraodon_nigroviridis
FBgn0020261	pcm	60	60.989	ENSTBEG00000003256	XRN1	59	60.989	Tupaia_belangeri
FBgn0020261	pcm	72	39.362	ENSTTRG00000012914	XRN1	74	38.336	Tursiops_truncatus
FBgn0020261	pcm	76	38.224	ENSUAMG00000001608	XRN1	96	51.060	Ursus_americanus
FBgn0020261	pcm	76	39.506	ENSUMAG00000013625	XRN1	74	39.752	Ursus_maritimus
FBgn0020261	pcm	76	38.158	ENSVPAG00000004690	XRN1	74	38.162	Vicugna_pacos
FBgn0020261	pcm	76	39.614	ENSVVUG00000024461	XRN1	99	52.700	Vulpes_vulpes
FBgn0020261	pcm	72	40.132	ENSXETG00000000619	xrn1	95	60.000	Xenopus_tropicalis
FBgn0020261	pcm	71	42.275	ENSXCOG00000007917	xrn1	70	42.105	Xiphophorus_couchianus
FBgn0020261	pcm	71	42.190	ENSXMAG00000018320	xrn1	73	42.190	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	16177138.	IMP	Process
GO:0000932	P-body	18652574.	IDA	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005737	cytoplasm	18708044.	IDA	Component
GO:0006402	mRNA catabolic process	29523653.	IDA	Process
GO:0007283	spermatogenesis	18652574.	IMP	Process
GO:0007391	dorsal closure	18547166.	IMP	Process
GO:0007476	imaginal disc-derived wing morphogenesis	18547166.	IMP	Process
GO:0008409	5'-3' exonuclease activity	-	IEA	Function
GO:0010603	regulation of cytoplasmic mRNA processing body assembly	18708044.	IMP	Process
GO:0010629	negative regulation of gene expression	29523653.	IGI	Process
GO:0016246	RNA interference	16177138.	IMP	Process
GO:0034428	nuclear-transcribed mRNA catabolic process, exonucleolytic, 5'-3'	17545151.	IMP	Process
GO:0042060	wound healing	18547166.	IMP	Process
GO:0043025	neuronal cell body	21267420.	IDA	Component
GO:0043066	negative regulation of apoptotic process	25836675.	IMP	Process
GO:0045572	positive regulation of imaginal disc growth	25836675.	IMP	Process
GO:0046529	imaginal disc fusion, thorax closure	18547166.	IMP	Process
GO:0070481	nuclear-transcribed mRNA catabolic process, non-stop decay	25128630.	IGI	Process
GO:0070481	nuclear-transcribed mRNA catabolic process, non-stop decay	25128630.	IMP	Process
GO:0071598	neuronal ribonucleoprotein granule	17178403.21267420.	IDA	Component
GO:1990124	messenger ribonucleoprotein complex	17178403.	IDA	Component