EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0020660 (Gene tree)
Gene ID: 3355041
Gene Symbol: eIF4B
Alias: -
Full Name: eukaryotic translation initiation factor 4B
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 15603 bases
Position: chr3L:27842669-27858271
Accession: FBgn0020660
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0112402	RRM_1	PF00076.22	8.7e-14	1	1
FBpp0112404	RRM_1	PF00076.22	8.7e-14	1	1
FBpp0306959	RRM_1	PF00076.22	8.7e-14	1	1
FBpp0112403	RRM_1	PF00076.22	1.1e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0113680	-	1504	-	FBpp0112403	459 (aa)	-	Q7PLL1
FBtr0113681	-	1651	-	FBpp0112404	390 (aa)	-	Q8SYL3
FBtr0113679	-	1575	-	FBpp0112402	389 (aa)	-	Q7PLL1
FBtr0334940	-	1443	-	FBpp0306959	392 (aa)	-	L7EEF1

Gene Model

Click here to download FBgn0020660's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0020660's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0020660	eIF4B	50	32.870	ENSG00000063046	EIF4B	89	32.773	Homo_sapiens
FBgn0020660	eIF4B	63	37.383	ENSAMXG00000034236	eif4bb	71	30.947	Astyanax_mexicanus
FBgn0020660	eIF4B	88	32.381	ENSCAPG00000009384	-	55	39.241	Cavia_aperea
FBgn0020660	eIF4B	77	32.381	ENSCPOG00000005595	-	61	30.990	Cavia_porcellus
FBgn0020660	eIF4B	90	32.381	ENSCLAG00000013741	EIF4B	61	30.990	Chinchilla_lanigera
FBgn0020660	eIF4B	84	36.937	ENSCING00000016816	-	95	35.843	Ciona_intestinalis
FBgn0020660	eIF4B	64	31.071	ENSCANG00000043275	-	67	31.071	Colobus_angolensis_palliatus
FBgn0020660	eIF4B	77	32.381	ENSFDAG00000009048	-	60	30.159	Fukomys_damarensis
FBgn0020660	eIF4B	86	30.081	ENSGGOG00000037011	-	81	36.184	Gorilla_gorilla
FBgn0020660	eIF4B	86	30.649	ENSHGLG00000004627	-	59	31.081	Heterocephalus_glaber_female
FBgn0020660	eIF4B	77	32.381	ENSHGLG00100008532	-	60	30.688	Heterocephalus_glaber_male
FBgn0020660	eIF4B	88	32.381	ENSMFAG00000037195	-	59	30.105	Macaca_fascicularis
FBgn0020660	eIF4B	88	34.286	ENSMMUG00000001062	EIF4B	63	30.542	Macaca_mulatta
FBgn0020660	eIF4B	58	32.500	ENSMOCG00000006053	-	84	32.153	Microtus_ochrogaster
FBgn0020660	eIF4B	88	33.333	ENSNGAG00000012353	Eif4b	55	30.595	Nannospalax_galili
FBgn0020660	eIF4B	77	44.444	ENSNLEG00000017727	EIF4B	94	30.688	Nomascus_leucogenys
FBgn0020660	eIF4B	50	32.143	ENSOPRG00000008447	EIF4B	56	30.352	Ochotona_princeps
FBgn0020660	eIF4B	92	33.600	ENSOCUG00000013484	EIF4B	53	30.411	Oryctolagus_cuniculus
FBgn0020660	eIF4B	71	30.241	ENSPTRG00000049274	-	52	30.241	Pan_troglodytes
FBgn0020660	eIF4B	66	32.292	ENSPMAG00000005947	-	74	38.806	Petromyzon_marinus
FBgn0020660	eIF4B	57	42.105	ENSPCIG00000011212	EIF4B	50	31.661	Phascolarctos_cinereus
FBgn0020660	eIF4B	71	30.968	ENSPCOG00000016096	-	57	30.968	Propithecus_coquereli

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001731	formation of translation preinitiation complex	21873635.	IBA	Process
GO:0002181	cytoplasmic translation	21873635.	IBA	Process
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003743	translation initiation factor activity	21873635.	IBA	Function
GO:0003743	translation initiation factor activity	7893711.	IPI	Function
GO:0003743	translation initiation factor activity	10908586.	ISS	Function
GO:0005829	cytosol	25294944.	HDA	Component
GO:0005829	cytosol	15233788.	IDA	Component
GO:0005829	cytosol	7893711.	IPI	Component
GO:0005829	cytosol	10908586.	ISS	Component
GO:0005844	polysome	21873635.	IBA	Component
GO:0006413	translational initiation	7893711.	IPI	Process
GO:0006413	translational initiation	10908586.	ISS	Process
GO:0008283	cell proliferation	15233788.	IMP	Process
GO:0033592	RNA strand annealing activity	21873635.	IBA	Function
GO:0034057	RNA strand-exchange activity	21873635.	IBA	Function
GO:0043024	ribosomal small subunit binding	21873635.	IBA	Function
GO:0097010	eukaryotic translation initiation factor 4F complex assembly	21873635.	IBA	Process