EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0020909 (Gene tree)
Gene ID: 32338
Gene Symbol: Rtc1
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Plus strand
Length: 1420 bases
Position: chrX:13757179-13758598
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0073651	RTC	PF01137.21	4.7e-55	1	1
FBpp0073651	RTC_insert	PF05189.13	1.5e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0073820	-	1301	-	FBpp0073651	384 (aa)	-	P56175

Gene Model

Click here to download FBgn0020909's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0020909's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0020909	Rtc1	98	53.968	ENSG00000120158	RCL1	99	53.968	Homo_sapiens
FBgn0020909	Rtc1	99	53.947	ENSAPOG00000015666	rcl1	98	53.619	Acanthochromis_polyacanthus
FBgn0020909	Rtc1	98	53.704	ENSAMEG00000002631	RCL1	99	53.704	Ailuropoda_melanoleuca
FBgn0020909	Rtc1	97	55.615	ENSACIG00000021195	rcl1	98	54.960	Amphilophus_citrinellus
FBgn0020909	Rtc1	97	53.887	ENSAOCG00000002223	rcl1	98	53.083	Amphiprion_ocellaris
FBgn0020909	Rtc1	99	53.421	ENSAPEG00000006905	rcl1	98	53.083	Amphiprion_percula
FBgn0020909	Rtc1	97	54.717	ENSATEG00000020026	rcl1	98	53.908	Anabas_testudineus
FBgn0020909	Rtc1	87	54.491	ENSAPLG00000006031	RCL1	99	54.491	Anas_platyrhynchos
FBgn0020909	Rtc1	99	52.632	ENSACAG00000003640	RCL1	99	52.632	Anolis_carolinensis
FBgn0020909	Rtc1	98	54.762	ENSANAG00000037372	RCL1	99	54.762	Aotus_nancymaae
FBgn0020909	Rtc1	97	55.526	ENSACLG00000021724	rcl1	98	54.717	Astatotilapia_calliptera
FBgn0020909	Rtc1	97	54.933	ENSAMXG00000033394	rcl1	99	53.867	Astyanax_mexicanus
FBgn0020909	Rtc1	98	43.651	WBGene00022852	ZK1127.5	99	43.651	Caenorhabditis_elegans
FBgn0020909	Rtc1	98	54.233	ENSCJAG00000011202	RCL1	99	54.233	Callithrix_jacchus
FBgn0020909	Rtc1	98	53.439	ENSCAFG00000002091	RCL1	99	53.439	Canis_familiaris
FBgn0020909	Rtc1	98	53.704	ENSCAFG00020000638	RCL1	78	53.704	Canis_lupus_dingo
FBgn0020909	Rtc1	98	54.762	ENSCHIG00000012407	RCL1	99	54.762	Capra_hircus
FBgn0020909	Rtc1	86	53.474	ENSTSYG00000009592	RCL1	99	48.705	Carlito_syrichta
FBgn0020909	Rtc1	64	51.553	ENSCAPG00000013575	RCL1	98	51.553	Cavia_aperea
FBgn0020909	Rtc1	98	53.439	ENSCPOG00000015354	RCL1	99	53.439	Cavia_porcellus
FBgn0020909	Rtc1	98	53.968	ENSCCAG00000033505	RCL1	99	53.968	Cebus_capucinus
FBgn0020909	Rtc1	98	54.233	ENSCATG00000034721	RCL1	99	54.233	Cercocebus_atys
FBgn0020909	Rtc1	98	52.910	ENSCLAG00000007445	RCL1	99	52.910	Chinchilla_lanigera
FBgn0020909	Rtc1	98	54.233	ENSCSAG00000008811	RCL1	99	54.233	Chlorocebus_sabaeus
FBgn0020909	Rtc1	85	46.626	ENSCHOG00000007216	RCL1	100	46.626	Choloepus_hoffmanni
FBgn0020909	Rtc1	99	53.684	ENSCPBG00000025481	RCL1	94	53.433	Chrysemys_picta_bellii
FBgn0020909	Rtc1	98	51.467	ENSCING00000019565	-	98	51.467	Ciona_intestinalis
FBgn0020909	Rtc1	98	54.233	ENSCANG00000027099	RCL1	99	54.233	Colobus_angolensis_palliatus
FBgn0020909	Rtc1	98	52.646	ENSCGRG00001013748	Rcl1	99	52.646	Cricetulus_griseus_chok1gshd
FBgn0020909	Rtc1	86	52.410	ENSCGRG00000005843	Rcl1	99	52.410	Cricetulus_griseus_crigri
FBgn0020909	Rtc1	97	53.908	ENSCSEG00000000712	rcl1	96	53.100	Cynoglossus_semilaevis
FBgn0020909	Rtc1	97	55.228	ENSCVAG00000011536	rcl1	98	54.424	Cyprinodon_variegatus
FBgn0020909	Rtc1	97	53.100	ENSDARG00000038312	rcl1	99	52.291	Danio_rerio
FBgn0020909	Rtc1	70	52.985	ENSDNOG00000019911	RCL1	98	52.985	Dasypus_novemcinctus
FBgn0020909	Rtc1	98	53.968	ENSDORG00000015645	Rcl1	99	53.968	Dipodomys_ordii
FBgn0020909	Rtc1	65	42.570	ENSETEG00000014087	-	74	41.767	Echinops_telfairi
FBgn0020909	Rtc1	99	50.000	ENSEBUG00000016621	-	99	50.000	Eptatretus_burgeri
FBgn0020909	Rtc1	98	53.968	ENSEASG00005010653	RCL1	99	53.968	Equus_asinus_asinus
FBgn0020909	Rtc1	98	53.704	ENSECAG00000015973	RCL1	99	53.704	Equus_caballus
FBgn0020909	Rtc1	98	46.561	ENSEEUG00000009801	RCL1	99	46.561	Erinaceus_europaeus
FBgn0020909	Rtc1	98	52.381	ENSELUG00000007353	rcl1	99	51.587	Esox_lucius
FBgn0020909	Rtc1	98	52.910	ENSFCAG00000014557	RCL1	99	52.910	Felis_catus
FBgn0020909	Rtc1	87	55.389	ENSFALG00000010553	RCL1	87	55.389	Ficedula_albicollis
FBgn0020909	Rtc1	86	53.474	ENSFDAG00000004209	RCL1	99	53.474	Fukomys_damarensis
FBgn0020909	Rtc1	97	54.424	ENSFHEG00000011228	rcl1	98	53.619	Fundulus_heteroclitus
FBgn0020909	Rtc1	97	55.228	ENSGMOG00000004677	rcl1	98	54.301	Gadus_morhua
FBgn0020909	Rtc1	98	55.200	ENSGALG00000015024	RCL1	98	54.933	Gallus_gallus
FBgn0020909	Rtc1	97	54.960	ENSGAFG00000007257	rcl1	98	54.155	Gambusia_affinis
FBgn0020909	Rtc1	98	53.439	ENSGACG00000017474	rcl1	99	52.646	Gasterosteus_aculeatus
FBgn0020909	Rtc1	99	53.158	ENSGAGG00000003689	RCL1	99	53.158	Gopherus_agassizii
FBgn0020909	Rtc1	98	53.704	ENSGGOG00000015041	RCL1	99	53.704	Gorilla_gorilla
FBgn0020909	Rtc1	97	56.065	ENSHBUG00000001393	rcl1	98	55.256	Haplochromis_burtoni
FBgn0020909	Rtc1	98	52.381	ENSHGLG00000016452	RCL1	99	52.381	Heterocephalus_glaber_female
FBgn0020909	Rtc1	99	47.368	ENSHGLG00000005368	-	99	47.105	Heterocephalus_glaber_female
FBgn0020909	Rtc1	99	48.158	ENSHGLG00100018010	-	99	47.895	Heterocephalus_glaber_male
FBgn0020909	Rtc1	98	48.413	ENSHGLG00100008718	-	99	48.413	Heterocephalus_glaber_male
FBgn0020909	Rtc1	97	54.301	ENSHCOG00000020170	rcl1	98	53.639	Hippocampus_comes
FBgn0020909	Rtc1	97	55.795	ENSIPUG00000018054	RCL1	99	54.570	Ictalurus_punctatus
FBgn0020909	Rtc1	98	54.762	ENSSTOG00000000023	RCL1	99	54.762	Ictidomys_tridecemlineatus
FBgn0020909	Rtc1	54	36.842	ENSJJAG00000000764	-	99	36.842	Jaculus_jaculus
FBgn0020909	Rtc1	98	47.090	ENSJJAG00000015632	-	99	47.090	Jaculus_jaculus
FBgn0020909	Rtc1	98	53.704	ENSJJAG00000022803	-	99	53.704	Jaculus_jaculus
FBgn0020909	Rtc1	97	54.155	ENSKMAG00000011946	rcl1	98	53.351	Kryptolebias_marmoratus
FBgn0020909	Rtc1	97	50.943	ENSLBEG00000003957	rcl1	98	50.135	Labrus_bergylta
FBgn0020909	Rtc1	89	52.632	ENSLACG00000004594	RCL1	99	54.348	Latimeria_chalumnae
FBgn0020909	Rtc1	97	54.839	ENSLOCG00000010148	rcl1	97	54.424	Lepisosteus_oculatus
FBgn0020909	Rtc1	98	54.762	ENSLAFG00000017495	RCL1	99	54.762	Loxodonta_africana
FBgn0020909	Rtc1	98	54.233	ENSMFAG00000037906	RCL1	99	54.233	Macaca_fascicularis
FBgn0020909	Rtc1	98	54.233	ENSMNEG00000012288	RCL1	99	54.233	Macaca_nemestrina
FBgn0020909	Rtc1	98	54.233	ENSMLEG00000043088	RCL1	99	54.233	Mandrillus_leucophaeus
FBgn0020909	Rtc1	97	54.447	ENSMAMG00000008311	rcl1	98	53.639	Mastacembelus_armatus
FBgn0020909	Rtc1	97	55.526	ENSMZEG00005017292	rcl1	98	54.717	Maylandia_zebra
FBgn0020909	Rtc1	58	52.889	ENSMGAG00000002245	RCL1	99	52.444	Meleagris_gallopavo
FBgn0020909	Rtc1	57	49.772	ENSMAUG00000008922	Rcl1	99	49.772	Mesocricetus_auratus
FBgn0020909	Rtc1	98	53.704	ENSMICG00000015562	RCL1	99	53.704	Microcebus_murinus
FBgn0020909	Rtc1	98	52.910	ENSMOCG00000012145	Rcl1	99	52.910	Microtus_ochrogaster
FBgn0020909	Rtc1	97	53.763	ENSMMOG00000021264	rcl1	98	53.495	Mola_mola
FBgn0020909	Rtc1	92	52.841	ENSMODG00000015377	RCL1	91	53.468	Monodelphis_domestica
FBgn0020909	Rtc1	97	55.256	ENSMALG00000018618	rcl1	98	54.447	Monopterus_albus
FBgn0020909	Rtc1	98	52.910	MGP_CAROLIEiJ_G0022853	Rcl1	99	52.910	Mus_caroli
FBgn0020909	Rtc1	98	53.175	ENSMUSG00000024785	Rcl1	99	53.175	Mus_musculus
FBgn0020909	Rtc1	98	52.646	MGP_PahariEiJ_G0014346	Rcl1	99	52.646	Mus_pahari
FBgn0020909	Rtc1	98	52.646	MGP_SPRETEiJ_G0023771	Rcl1	99	52.646	Mus_spretus
FBgn0020909	Rtc1	98	53.968	ENSMPUG00000004998	RCL1	99	53.968	Mustela_putorius_furo
FBgn0020909	Rtc1	98	53.968	ENSMLUG00000009654	RCL1	99	53.968	Myotis_lucifugus
FBgn0020909	Rtc1	98	53.704	ENSNGAG00000015327	Rcl1	99	53.704	Nannospalax_galili
FBgn0020909	Rtc1	90	53.890	ENSNBRG00000019854	rcl1	93	53.026	Neolamprologus_brichardi
FBgn0020909	Rtc1	98	52.381	ENSNLEG00000008891	RCL1	99	52.381	Nomascus_leucogenys
FBgn0020909	Rtc1	99	47.895	ENSMEUG00000007653	RCL1	99	47.895	Notamacropus_eugenii
FBgn0020909	Rtc1	98	53.439	ENSOPRG00000010965	RCL1	99	53.439	Ochotona_princeps
FBgn0020909	Rtc1	87	45.373	ENSODEG00000004151	RCL1	95	45.646	Octodon_degus
FBgn0020909	Rtc1	97	56.065	ENSONIG00000003871	rcl1	98	55.256	Oreochromis_niloticus
FBgn0020909	Rtc1	67	50.965	ENSOANG00000013193	-	99	50.965	Ornithorhynchus_anatinus
FBgn0020909	Rtc1	98	53.968	ENSOCUG00000008161	RCL1	99	53.968	Oryctolagus_cuniculus
FBgn0020909	Rtc1	99	53.018	ENSORLG00000010443	rcl1	99	52.368	Oryzias_latipes
FBgn0020909	Rtc1	99	53.421	ENSORLG00020012211	rcl1	99	52.632	Oryzias_latipes_hni
FBgn0020909	Rtc1	99	53.018	ENSORLG00015001122	rcl1	99	51.842	Oryzias_latipes_hsok
FBgn0020909	Rtc1	99	53.684	ENSOMEG00000022976	rcl1	88	52.895	Oryzias_melastigma
FBgn0020909	Rtc1	98	53.439	ENSOGAG00000007480	RCL1	99	53.439	Otolemur_garnettii
FBgn0020909	Rtc1	98	54.497	ENSOARG00000013463	RCL1	99	54.497	Ovis_aries
FBgn0020909	Rtc1	98	53.704	ENSPPAG00000037958	RCL1	99	53.704	Pan_paniscus
FBgn0020909	Rtc1	98	52.910	ENSPPRG00000022645	RCL1	99	52.910	Panthera_pardus
FBgn0020909	Rtc1	86	53.030	ENSPTIG00000019031	RCL1	99	49.772	Panthera_tigris_altaica
FBgn0020909	Rtc1	98	53.704	ENSPTRG00000020743	RCL1	99	53.704	Pan_troglodytes
FBgn0020909	Rtc1	98	54.233	ENSPANG00000025151	RCL1	99	54.233	Papio_anubis
FBgn0020909	Rtc1	98	53.704	ENSPKIG00000021022	rcl1	99	53.704	Paramormyrops_kingsleyae
FBgn0020909	Rtc1	87	53.593	ENSPSIG00000012302	RCL1	99	53.593	Pelodiscus_sinensis
FBgn0020909	Rtc1	98	54.497	ENSPMGG00000024007	rcl1	99	53.704	Periophthalmus_magnuspinnatus
FBgn0020909	Rtc1	98	52.910	ENSPEMG00000023275	Rcl1	99	52.910	Peromyscus_maniculatus_bairdii
FBgn0020909	Rtc1	99	51.842	ENSPCIG00000000188	RCL1	99	51.842	Phascolarctos_cinereus
FBgn0020909	Rtc1	97	53.887	ENSPFOG00000019682	rcl1	98	53.619	Poecilia_formosa
FBgn0020909	Rtc1	97	53.887	ENSPLAG00000022354	rcl1	98	53.619	Poecilia_latipinna
FBgn0020909	Rtc1	97	53.887	ENSPMEG00000008131	rcl1	98	53.619	Poecilia_mexicana
FBgn0020909	Rtc1	97	53.619	ENSPREG00000008032	rcl1	98	53.351	Poecilia_reticulata
FBgn0020909	Rtc1	98	54.233	ENSPPYG00000019244	RCL1	99	54.233	Pongo_abelii
FBgn0020909	Rtc1	98	50.000	ENSPCAG00000001440	RCL1	99	50.000	Procavia_capensis
FBgn0020909	Rtc1	98	54.233	ENSPCOG00000009611	RCL1	99	54.233	Propithecus_coquereli
FBgn0020909	Rtc1	98	53.175	ENSPVAG00000015752	RCL1	99	53.175	Pteropus_vampyrus
FBgn0020909	Rtc1	97	55.526	ENSPNYG00000012910	rcl1	98	54.717	Pundamilia_nyererei
FBgn0020909	Rtc1	97	55.376	ENSPNAG00000028307	rcl1	90	54.032	Pygocentrus_nattereri
FBgn0020909	Rtc1	98	53.439	ENSRNOG00000015491	Rcl1	99	53.439	Rattus_norvegicus
FBgn0020909	Rtc1	98	53.968	ENSRBIG00000035818	RCL1	99	53.968	Rhinopithecus_bieti
FBgn0020909	Rtc1	98	54.233	ENSRROG00000029781	RCL1	99	54.233	Rhinopithecus_roxellana
FBgn0020909	Rtc1	97	32.804	YOL010W	-	97	31.915	Saccharomyces_cerevisiae
FBgn0020909	Rtc1	98	53.968	ENSSBOG00000026369	RCL1	99	53.968	Saimiri_boliviensis_boliviensis
FBgn0020909	Rtc1	88	51.488	ENSSHAG00000014086	RCL1	99	51.488	Sarcophilus_harrisii
FBgn0020909	Rtc1	97	53.908	ENSSFOG00015023020	rcl1	98	53.639	Scleropages_formosus
FBgn0020909	Rtc1	97	53.908	ENSSMAG00000019751	rcl1	84	53.100	Scophthalmus_maximus
FBgn0020909	Rtc1	98	53.968	ENSSDUG00000006349	rcl1	98	53.639	Seriola_dumerili
FBgn0020909	Rtc1	98	53.704	ENSSLDG00000022076	rcl1	98	53.369	Seriola_lalandi_dorsalis
FBgn0020909	Rtc1	98	53.704	ENSSARG00000009260	RCL1	99	53.704	Sorex_araneus
FBgn0020909	Rtc1	99	52.895	ENSSPUG00000016330	RCL1	99	52.895	Sphenodon_punctatus
FBgn0020909	Rtc1	98	54.497	ENSSPAG00000018038	rcl1	99	53.704	Stegastes_partitus
FBgn0020909	Rtc1	98	53.439	ENSSSCG00000005217	RCL1	82	53.439	Sus_scrofa
FBgn0020909	Rtc1	99	55.236	ENSTGUG00000005138	RCL1	99	55.236	Taeniopygia_guttata
FBgn0020909	Rtc1	97	53.369	ENSTRUG00000010493	rcl1	98	52.561	Takifugu_rubripes
FBgn0020909	Rtc1	97	54.178	ENSTNIG00000013214	rcl1	97	53.369	Tetraodon_nigroviridis
FBgn0020909	Rtc1	98	50.265	ENSTBEG00000016339	RCL1	99	50.265	Tupaia_belangeri
FBgn0020909	Rtc1	98	53.175	ENSTTRG00000016525	RCL1	99	53.175	Tursiops_truncatus
FBgn0020909	Rtc1	98	53.704	ENSUAMG00000005598	RCL1	100	55.046	Ursus_americanus
FBgn0020909	Rtc1	86	53.172	ENSUMAG00000017890	RCL1	96	53.172	Ursus_maritimus
FBgn0020909	Rtc1	86	53.474	ENSVPAG00000009188	RCL1	99	53.474	Vicugna_pacos
FBgn0020909	Rtc1	86	53.614	ENSVVUG00000007304	RCL1	88	53.614	Vulpes_vulpes
FBgn0020909	Rtc1	99	50.131	ENSXETG00000000592	rcl1	99	50.131	Xenopus_tropicalis
FBgn0020909	Rtc1	97	54.424	ENSXCOG00000004922	rcl1	98	54.155	Xiphophorus_couchianus
FBgn0020909	Rtc1	97	54.424	ENSXMAG00000022366	RCL1	98	54.155	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0042254	ribosome biogenesis	-	IEA	Process