EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0022942 (Gene tree)
Gene ID: 44409
Gene Symbol: Cbp80
Alias: -
Full Name: cap binding protein 80
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 8245 bases
Position: chrX:4650015-4658259
Accession: FBgn0022942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0070651	MIF4G_like	PF09088.11	3.7e-38	1	1
FBpp0070652	MIF4G_like	PF09088.11	3.7e-38	1	1
FBpp0070651	MIF4G_like_2	PF09090.11	2e-89	1	1
FBpp0070652	MIF4G_like_2	PF09090.11	2e-89	1	1
FBpp0070651	MIF4G	PF02854.19	1.2e-21	1	1
FBpp0070652	MIF4G	PF02854.19	1.2e-21	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0070683	-	3017	-	FBpp0070651	800 (aa)	-	Q7K4N3
FBtr0070684	-	3236	-	FBpp0070652	800 (aa)	-	Q7K4N3

Gene Model

Click here to download FBgn0022942's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0022942's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0022942	Cbp80	99	32.601	FBgn0038887	CG7907	99	32.479

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0022942	Cbp80	100	57.875	ENSG00000136937	NCBP1	100	57.391	Homo_sapiens
FBgn0022942	Cbp80	99	57.322	ENSAPOG00000008002	NCBP1	99	56.931	Acanthochromis_polyacanthus
FBgn0022942	Cbp80	100	57.731	ENSAMEG00000004763	NCBP1	100	57.249	Ailuropoda_melanoleuca
FBgn0022942	Cbp80	99	56.821	ENSACIG00000000274	NCBP1	99	56.821	Amphilophus_citrinellus
FBgn0022942	Cbp80	99	57.322	ENSAOCG00000021148	NCBP1	99	56.931	Amphiprion_ocellaris
FBgn0022942	Cbp80	99	57.322	ENSAPEG00000001701	NCBP1	99	56.931	Amphiprion_percula
FBgn0022942	Cbp80	99	57.947	ENSATEG00000006929	NCBP1	99	57.302	Anabas_testudineus
FBgn0022942	Cbp80	95	57.012	ENSAPLG00000016318	NCBP1	100	56.437	Anas_platyrhynchos
FBgn0022942	Cbp80	100	56.592	ENSACAG00000004409	NCBP1	87	55.882	Anolis_carolinensis
FBgn0022942	Cbp80	100	56.359	ENSANAG00000025744	NCBP1	99	57.162	Aotus_nancymaae
FBgn0022942	Cbp80	99	57.447	ENSACLG00000014812	NCBP1	99	56.807	Astatotilapia_calliptera
FBgn0022942	Cbp80	99	56.946	ENSAMXG00000016364	NCBP1	99	56.946	Astyanax_mexicanus
FBgn0022942	Cbp80	100	57.750	ENSBTAG00000009732	NCBP1	99	59.159	Bos_taurus
FBgn0022942	Cbp80	99	34.815	WBGene00018156	ncbp-1	99	34.815	Caenorhabditis_elegans
FBgn0022942	Cbp80	100	57.875	ENSCJAG00000010840	NCBP1	99	59.809	Callithrix_jacchus
FBgn0022942	Cbp80	100	57.750	ENSCAFG00000002445	NCBP1	100	57.267	Canis_familiaris
FBgn0022942	Cbp80	98	57.928	ENSCAFG00020017997	NCBP1	100	56.691	Canis_lupus_dingo
FBgn0022942	Cbp80	100	57.625	ENSCHIG00000020139	NCBP1	100	57.143	Capra_hircus
FBgn0022942	Cbp80	50	61.364	ENSTSYG00000011914	NCBP1	97	60.000	Carlito_syrichta
FBgn0022942	Cbp80	81	52.174	ENSCAPG00000014252	NCBP1	90	52.174	Cavia_aperea
FBgn0022942	Cbp80	95	57.632	ENSCPOG00000012573	NCBP1	99	56.848	Cavia_porcellus
FBgn0022942	Cbp80	100	57.875	ENSCCAG00000032297	NCBP1	100	57.391	Cebus_capucinus
FBgn0022942	Cbp80	100	57.875	ENSCATG00000010052	NCBP1	100	57.391	Cercocebus_atys
FBgn0022942	Cbp80	100	57.875	ENSCLAG00000014339	NCBP1	100	57.391	Chinchilla_lanigera
FBgn0022942	Cbp80	100	57.875	ENSCSAG00000010929	NCBP1	100	57.391	Chlorocebus_sabaeus
FBgn0022942	Cbp80	89	56.604	ENSCHOG00000010332	NCBP1	90	56.604	Choloepus_hoffmanni
FBgn0022942	Cbp80	100	56.375	ENSCPBG00000024344	NCBP1	100	56.375	Chrysemys_picta_bellii
FBgn0022942	Cbp80	99	47.323	ENSCING00000008990	-	99	47.323	Ciona_intestinalis
FBgn0022942	Cbp80	99	48.276	ENSCSAVG00000005300	-	99	51.531	Ciona_savignyi
FBgn0022942	Cbp80	100	57.875	ENSCANG00000036913	NCBP1	100	57.391	Colobus_angolensis_palliatus
FBgn0022942	Cbp80	100	57.750	ENSCGRG00001015771	Ncbp1	100	57.267	Cricetulus_griseus_chok1gshd
FBgn0022942	Cbp80	99	57.848	ENSCGRG00000010311	Ncbp1	100	57.358	Cricetulus_griseus_crigri
FBgn0022942	Cbp80	99	58.073	ENSCSEG00000012377	NCBP1	99	58.073	Cynoglossus_semilaevis
FBgn0022942	Cbp80	99	57.196	ENSCVAG00000008795	NCBP1	99	56.489	Cyprinodon_variegatus
FBgn0022942	Cbp80	100	57.750	ENSDNOG00000006885	NCBP1	100	57.267	Dasypus_novemcinctus
FBgn0022942	Cbp80	100	55.500	ENSDORG00000013652	Ncbp1	100	55.031	Dipodomys_ordii
FBgn0022942	Cbp80	89	55.914	ENSETEG00000009705	NCBP1	89	55.914	Echinops_telfairi
FBgn0022942	Cbp80	100	57.179	ENSEBUG00000008386	NCBP1	100	56.312	Eptatretus_burgeri
FBgn0022942	Cbp80	100	57.500	ENSEASG00005022795	NCBP1	100	57.019	Equus_asinus_asinus
FBgn0022942	Cbp80	100	57.625	ENSECAG00000013847	NCBP1	100	57.143	Equus_caballus
FBgn0022942	Cbp80	95	53.412	ENSEEUG00000015973	NCBP1	99	53.525	Erinaceus_europaeus
FBgn0022942	Cbp80	99	56.000	ENSELUG00000022519	NCBP1	99	56.821	Esox_lucius
FBgn0022942	Cbp80	100	57.625	ENSFCAG00000001206	NCBP1	100	57.143	Felis_catus
FBgn0022942	Cbp80	98	57.325	ENSFALG00000001193	NCBP1	99	56.730	Ficedula_albicollis
FBgn0022942	Cbp80	100	57.875	ENSFDAG00000010864	NCBP1	100	57.391	Fukomys_damarensis
FBgn0022942	Cbp80	99	57.196	ENSFHEG00000000655	NCBP1	99	56.489	Fundulus_heteroclitus
FBgn0022942	Cbp80	99	56.625	ENSGMOG00000008653	NCBP1	99	56.571	Gadus_morhua
FBgn0022942	Cbp80	98	57.673	ENSGALG00000002087	NCBP1	100	56.824	Gallus_gallus
FBgn0022942	Cbp80	99	57.322	ENSGAFG00000017787	NCBP1	99	57.447	Gambusia_affinis
FBgn0022942	Cbp80	99	57.697	ENSGACG00000016772	NCBP1	98	57.697	Gasterosteus_aculeatus
FBgn0022942	Cbp80	98	58.440	ENSGAGG00000019483	NCBP1	98	58.440	Gopherus_agassizii
FBgn0022942	Cbp80	100	57.875	ENSGGOG00000001376	NCBP1	100	57.391	Gorilla_gorilla
FBgn0022942	Cbp80	99	57.447	ENSHBUG00000020843	NCBP1	99	56.807	Haplochromis_burtoni
FBgn0022942	Cbp80	100	57.875	ENSHGLG00000001882	NCBP1	100	57.391	Heterocephalus_glaber_female
FBgn0022942	Cbp80	100	51.122	ENSHGLG00000018112	-	100	50.682	Heterocephalus_glaber_female
FBgn0022942	Cbp80	100	50.998	ENSHGLG00100017373	-	100	50.558	Heterocephalus_glaber_male
FBgn0022942	Cbp80	100	57.875	ENSHGLG00100013014	NCBP1	100	57.391	Heterocephalus_glaber_male
FBgn0022942	Cbp80	74	54.090	ENSHCOG00000000204	NCBP1	87	53.213	Hippocampus_comes
FBgn0022942	Cbp80	99	57.125	ENSIPUG00000007275	ncbp1	99	57.071	Ictalurus_punctatus
FBgn0022942	Cbp80	100	57.875	ENSSTOG00000002695	NCBP1	100	57.391	Ictidomys_tridecemlineatus
FBgn0022942	Cbp80	99	56.946	ENSKMAG00000003594	NCBP1	99	61.694	Kryptolebias_marmoratus
FBgn0022942	Cbp80	99	56.790	ENSLBEG00000011661	NCBP1	99	56.044	Labrus_bergylta
FBgn0022942	Cbp80	100	54.286	ENSLACG00000013955	NCBP1	100	54.286	Latimeria_chalumnae
FBgn0022942	Cbp80	99	50.864	ENSLOCG00000009579	NCBP1	99	50.549	Lepisosteus_oculatus
FBgn0022942	Cbp80	100	57.750	ENSLAFG00000005999	NCBP1	100	57.267	Loxodonta_africana
FBgn0022942	Cbp80	100	57.875	ENSMFAG00000030994	NCBP1	100	57.391	Macaca_fascicularis
FBgn0022942	Cbp80	98	58.056	ENSMMUG00000012281	NCBP1	99	57.423	Macaca_mulatta
FBgn0022942	Cbp80	100	57.875	ENSMNEG00000042790	NCBP1	100	57.391	Macaca_nemestrina
FBgn0022942	Cbp80	100	57.875	ENSMLEG00000030374	NCBP1	100	57.391	Mandrillus_leucophaeus
FBgn0022942	Cbp80	99	57.822	ENSMAMG00000014806	NCBP1	99	57.178	Mastacembelus_armatus
FBgn0022942	Cbp80	97	57.198	ENSMZEG00005009290	-	99	57.198	Maylandia_zebra
FBgn0022942	Cbp80	99	57.447	ENSMZEG00005003469	NCBP1	99	56.807	Maylandia_zebra
FBgn0022942	Cbp80	99	57.431	ENSMAUG00000020583	Ncbp1	99	56.946	Mesocricetus_auratus
FBgn0022942	Cbp80	100	57.625	ENSMICG00000012682	NCBP1	100	57.143	Microcebus_murinus
FBgn0022942	Cbp80	100	57.750	ENSMOCG00000015818	Ncbp1	100	57.267	Microtus_ochrogaster
FBgn0022942	Cbp80	90	56.250	ENSMMOG00000002610	NCBP1	99	56.250	Mola_mola
FBgn0022942	Cbp80	100	57.606	ENSMODG00000003202	NCBP1	99	57.731	Monodelphis_domestica
FBgn0022942	Cbp80	99	57.447	ENSMALG00000003547	NCBP1	99	56.931	Monopterus_albus
FBgn0022942	Cbp80	100	57.500	MGP_CAROLIEiJ_G0025982	Ncbp1	100	57.019	Mus_caroli
FBgn0022942	Cbp80	100	57.500	ENSMUSG00000028330	Ncbp1	100	57.019	Mus_musculus
FBgn0022942	Cbp80	100	57.375	MGP_PahariEiJ_G0028318	Ncbp1	100	56.894	Mus_pahari
FBgn0022942	Cbp80	100	57.500	MGP_SPRETEiJ_G0026945	Ncbp1	100	57.019	Mus_spretus
FBgn0022942	Cbp80	100	57.750	ENSMPUG00000006399	NCBP1	100	57.267	Mustela_putorius_furo
FBgn0022942	Cbp80	98	57.417	ENSMLUG00000015201	NCBP1	99	56.925	Myotis_lucifugus
FBgn0022942	Cbp80	100	57.750	ENSNGAG00000014101	Ncbp1	100	57.267	Nannospalax_galili
FBgn0022942	Cbp80	72	60.435	ENSNBRG00000014674	NCBP1	92	60.435	Neolamprologus_brichardi
FBgn0022942	Cbp80	100	57.875	ENSNLEG00000016909	NCBP1	100	57.391	Nomascus_leucogenys
FBgn0022942	Cbp80	88	57.862	ENSMEUG00000010672	NCBP1	90	57.862	Notamacropus_eugenii
FBgn0022942	Cbp80	75	53.859	ENSOPRG00000002144	-	78	53.411	Ochotona_princeps
FBgn0022942	Cbp80	100	57.875	ENSODEG00000003232	NCBP1	100	57.391	Octodon_degus
FBgn0022942	Cbp80	99	57.447	ENSONIG00000001502	NCBP1	99	56.807	Oreochromis_niloticus
FBgn0022942	Cbp80	77	60.420	ENSOANG00000001918	NCBP1	99	60.420	Ornithorhynchus_anatinus
FBgn0022942	Cbp80	98	56.943	ENSOCUG00000013853	NCBP1	97	56.582	Oryctolagus_cuniculus
FBgn0022942	Cbp80	99	57.428	ENSORLG00000011008	NCBP1	99	57.428	Oryzias_latipes
FBgn0022942	Cbp80	99	57.303	ENSORLG00020017455	NCBP1	99	57.303	Oryzias_latipes_hni
FBgn0022942	Cbp80	99	57.428	ENSORLG00015012127	NCBP1	99	57.428	Oryzias_latipes_hsok
FBgn0022942	Cbp80	99	57.803	ENSOMEG00000020698	NCBP1	99	57.803	Oryzias_melastigma
FBgn0022942	Cbp80	100	57.855	ENSOGAG00000013888	NCBP1	100	57.373	Otolemur_garnettii
FBgn0022942	Cbp80	100	57.625	ENSOARG00000011233	NCBP1	100	57.143	Ovis_aries
FBgn0022942	Cbp80	100	57.875	ENSPPAG00000026462	NCBP1	100	57.391	Pan_paniscus
FBgn0022942	Cbp80	100	57.750	ENSPPRG00000022574	NCBP1	100	57.267	Panthera_pardus
FBgn0022942	Cbp80	100	57.750	ENSPTIG00000018507	NCBP1	100	57.267	Panthera_tigris_altaica
FBgn0022942	Cbp80	100	57.875	ENSPTRG00000021167	NCBP1	100	57.391	Pan_troglodytes
FBgn0022942	Cbp80	100	57.875	ENSPANG00000025591	NCBP1	100	57.391	Papio_anubis
FBgn0022942	Cbp80	100	56.750	ENSPKIG00000015861	NCBP1	100	56.750	Paramormyrops_kingsleyae
FBgn0022942	Cbp80	64	56.420	ENSPSIG00000009558	NCBP1	100	56.615	Pelodiscus_sinensis
FBgn0022942	Cbp80	99	56.095	ENSPMGG00000020476	NCBP1	99	55.886	Periophthalmus_magnuspinnatus
FBgn0022942	Cbp80	100	57.250	ENSPEMG00000020105	Ncbp1	100	56.894	Peromyscus_maniculatus_bairdii
FBgn0022942	Cbp80	100	50.309	ENSPMAG00000005533	NCBP1	100	50.371	Petromyzon_marinus
FBgn0022942	Cbp80	100	57.606	ENSPCIG00000015800	NCBP1	99	57.731	Phascolarctos_cinereus
FBgn0022942	Cbp80	99	56.983	ENSPFOG00000004158	NCBP1	99	56.527	Poecilia_formosa
FBgn0022942	Cbp80	99	57.322	ENSPLAG00000020002	NCBP1	99	56.737	Poecilia_latipinna
FBgn0022942	Cbp80	99	57.196	ENSPMEG00000019821	NCBP1	99	56.613	Poecilia_mexicana
FBgn0022942	Cbp80	99	57.447	ENSPREG00000006035	NCBP1	99	57.447	Poecilia_reticulata
FBgn0022942	Cbp80	100	57.875	ENSPPYG00000019426	NCBP1	100	57.391	Pongo_abelii
FBgn0022942	Cbp80	84	59.862	ENSPCAG00000009943	NCBP1	84	59.862	Procavia_capensis
FBgn0022942	Cbp80	81	56.713	ENSPCOG00000020024	NCBP1	98	55.952	Propithecus_coquereli
FBgn0022942	Cbp80	100	57.375	ENSPVAG00000005924	NCBP1	100	56.894	Pteropus_vampyrus
FBgn0022942	Cbp80	90	56.389	ENSPNYG00000002140	NCBP1	99	56.389	Pundamilia_nyererei
FBgn0022942	Cbp80	99	57.054	ENSPNAG00000027753	NCBP1	99	57.000	Pygocentrus_nattereri
FBgn0022942	Cbp80	100	57.250	ENSRNOG00000023605	Ncbp1	100	56.894	Rattus_norvegicus
FBgn0022942	Cbp80	100	57.875	ENSRBIG00000043175	NCBP1	100	57.391	Rhinopithecus_bieti
FBgn0022942	Cbp80	100	57.875	ENSRROG00000029767	NCBP1	100	57.391	Rhinopithecus_roxellana
FBgn0022942	Cbp80	100	57.875	ENSSBOG00000019378	NCBP1	97	60.837	Saimiri_boliviensis_boliviensis
FBgn0022942	Cbp80	98	40.932	ENSSHAG00000015882	NCBP1	98	41.058	Sarcophilus_harrisii
FBgn0022942	Cbp80	98	57.781	ENSSFOG00015001872	NCBP1	100	56.716	Scleropages_formosus
FBgn0022942	Cbp80	99	57.196	ENSSMAG00000007463	NCBP1	99	56.807	Scophthalmus_maximus
FBgn0022942	Cbp80	99	57.697	ENSSDUG00000007019	NCBP1	100	57.335	Seriola_dumerili
FBgn0022942	Cbp80	99	57.822	ENSSLDG00000021924	NCBP1	99	57.178	Seriola_lalandi_dorsalis
FBgn0022942	Cbp80	85	51.398	ENSSARG00000007274	NCBP1	86	50.851	Sorex_araneus
FBgn0022942	Cbp80	100	51.875	ENSSPUG00000008609	NCBP1	100	51.429	Sphenodon_punctatus
FBgn0022942	Cbp80	99	57.572	ENSSPAG00000012550	NCBP1	99	56.931	Stegastes_partitus
FBgn0022942	Cbp80	100	57.750	ENSSSCG00000005366	NCBP1	100	57.267	Sus_scrofa
FBgn0022942	Cbp80	100	54.250	ENSTGUG00000001472	NCBP1	100	53.704	Taeniopygia_guttata
FBgn0022942	Cbp80	99	57.447	ENSTRUG00000005287	NCBP1	99	56.931	Takifugu_rubripes
FBgn0022942	Cbp80	100	56.125	ENSTBEG00000004035	NCBP1	100	55.652	Tupaia_belangeri
FBgn0022942	Cbp80	88	56.827	ENSTTRG00000000507	NCBP1	88	56.064	Tursiops_truncatus
FBgn0022942	Cbp80	100	57.750	ENSUAMG00000005471	NCBP1	100	57.267	Ursus_americanus
FBgn0022942	Cbp80	97	56.572	ENSUMAG00000011865	NCBP1	100	56.691	Ursus_maritimus
FBgn0022942	Cbp80	100	55.250	ENSVPAG00000010537	NCBP1	100	54.783	Vicugna_pacos
FBgn0022942	Cbp80	100	57.750	ENSVVUG00000019725	NCBP1	100	57.267	Vulpes_vulpes
FBgn0022942	Cbp80	100	55.362	ENSXETG00000010179	ncbp1	100	55.362	Xenopus_tropicalis
FBgn0022942	Cbp80	99	57.196	ENSXMAG00000018253	NCBP1	99	56.613	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	21873635.	IBA	Process
GO:0000339	RNA cap binding	21873635.	IBA	Function
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005845	mRNA cap binding complex	21873635.	IBA	Component
GO:0005846	nuclear cap binding complex	21873635.	IBA	Component
GO:0006406	mRNA export from nucleus	21873635.	IBA	Process
GO:0016246	RNA interference	19632183.	IMP	Process
GO:0030422	production of siRNA involved in RNA interference	19632183.	IMP	Process
GO:0031053	primary miRNA processing	21873635.	IBA	Process
GO:0031053	primary miRNA processing	19632183.	IMP	Process
GO:0035195	gene silencing by miRNA	19632183.	IMP	Process
GO:0045071	negative regulation of viral genome replication	19632183.	IMP	Process
GO:0045292	mRNA cis splicing, via spliceosome	-	IEA	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component