EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Gene Ontology

Description

Ensembl ID: FBgn0022984 (Gene tree)
Gene ID: 37559
Gene Symbol: qkr58E-3
Alias: -
Full Name: quaking related 58E-3
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 2338 bases
Position: chr2R:22409208-22411545
Accession: FBgn0022984
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0288693	KH_1	PF00013.29	6.9e-10	1	1
FBpp0298043	KH_1	PF00013.29	6.9e-10	1	1
FBpp0308621	KH_1	PF00013.29	6.9e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0307214	-	1584	-	FBpp0298043	317 (aa)	-	O44434
FBtr0339538	-	1729	-	FBpp0308621	317 (aa)	-	O44434
FBtr0290254	-	1433	-	FBpp0288693	317 (aa)	-	O44434

Gene Model

Click here to download FBgn0022984's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0022984's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0022984	qkr58E-3	53	34.426	FBgn0264491	how	51	32.692
FBgn0022984	qkr58E-3	99	76.615	FBgn0034740	nsr	96	76.615
FBgn0022984	qkr58E-3	82	76.515	FBgn0034739	CG3927	97	76.515
FBgn0022984	qkr58E-3	58	60.109	FBgn0022985	qkr58E-2	50	55.024
FBgn0022984	qkr58E-3	56	54.802	FBgn0022986	qkr58E-1	50	54.802
FBgn0022984	qkr58E-3	97	79.233	FBgn0034659	CG4021	95	79.233

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	19218244.	IMP	Process
GO:0003723	RNA binding	9804767.	IDA	Function
GO:0003723	RNA binding	21203494.	ISM	Function
GO:0005634	nucleus	9804767.	IDA	Component
GO:0006915	apoptotic process	12563030.	IGI	Process
GO:0006915	apoptotic process	12563030.	IMP	Process
GO:0006915	apoptotic process	12563030.	IPI	Process
GO:0016607	nuclear speck	21203494.	IDA	Component