EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Gene Ontology

Description

Ensembl ID: FBgn0022986 (Gene tree)
Gene ID: 37561
Gene Symbol: qkr58E-1
Alias: -
Full Name: quaking related 58E-1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 2963 bases
Position: chr2R:22412556-22415518
Accession: FBgn0022986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0308620	KH_1	PF00013.29	9.4e-11	1	1
FBpp0312217	KH_1	PF00013.29	1e-10	1	1
FBpp0071754	KH_1	PF00013.29	1.1e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0346637	-	1902	-	FBpp0312217	379 (aa)	-	A0A0B4LG88
FBtr0339537	-	2122	-	FBpp0308620	357 (aa)	-	A0A0B4LGB9
FBtr0071843	-	1592	-	FBpp0071754	396 (aa)	-	O44435

Gene Model

Click here to download FBgn0022986's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0022986's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0022986	qkr58E-1	50	54.237	FBgn0034740	nsr	52	54.237
FBgn0022986	qkr58E-1	52	51.872	FBgn0034659	CG4021	57	51.872
FBgn0022986	qkr58E-1	50	56.497	FBgn0034739	CG3927	66	56.497
FBgn0022986	qkr58E-1	52	34.483	FBgn0264491	how	55	33.641
FBgn0022986	qkr58E-1	92	44.845	FBgn0022987	qkr54B	86	44.800
FBgn0022986	qkr58E-1	50	54.802	FBgn0022984	qkr58E-3	56	54.802

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	25294944.	HDA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component